Wall clock time and date at job start Tue Mar 31 2020 05:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38238 * 120.00308 * 2 1 4 4 C 1.38226 * 120.01121 * 180.25397 * 3 2 1 5 5 C 1.38265 * 120.01422 * 359.49113 * 4 3 2 6 6 C 1.50694 * 119.99120 * 180.25471 * 5 4 3 7 7 N 1.46904 * 109.47481 * 89.99861 * 6 5 4 8 8 C 1.46895 * 111.00381 * 189.99924 * 7 6 5 9 9 C 1.50700 * 109.47186 * 170.09111 * 8 7 6 10 10 H 1.08006 * 119.99944 * 355.09007 * 9 8 7 11 11 C 1.37878 * 120.00164 * 175.09326 * 9 8 7 12 12 N 1.31514 * 119.99905 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00048 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47472 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47398 * 120.00046 * 13 11 9 16 16 H 1.48502 * 109.46962 * 239.99609 * 13 11 9 17 17 C 1.46902 * 110.99760 * 66.04508 * 7 6 5 18 18 C 1.52998 * 109.47346 * 63.38535 * 17 7 6 19 19 C 1.47192 * 109.47619 * 181.12788 * 18 17 7 20 20 N 6.93074 * 130.01981 * 150.97818 * 2 1 3 21 21 C 1.38196 * 120.01211 * 0.23155 * 5 4 3 22 22 C 1.38299 * 120.00446 * 179.72007 * 2 1 3 23 23 Br 1.89101 * 120.01285 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47497 * 270.27485 * 1 2 3 25 25 H 1.09006 * 109.47203 * 30.27723 * 1 2 3 26 26 H 1.09001 * 109.47172 * 150.27853 * 1 2 3 27 27 H 1.08003 * 119.99884 * 0.02562 * 3 2 1 28 28 H 1.07993 * 119.98870 * 179.77280 * 4 3 2 29 29 H 1.09001 * 109.47358 * 209.99932 * 6 5 4 30 30 H 1.08998 * 109.47469 * 330.00293 * 6 5 4 31 31 H 1.08998 * 109.47000 * 290.09004 * 8 7 6 32 32 H 1.08997 * 109.46997 * 50.09153 * 8 7 6 33 33 H 0.96999 * 120.00047 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.47336 * 183.39048 * 17 7 6 35 35 H 1.09002 * 109.47242 * 303.39083 * 17 7 6 36 36 H 1.09003 * 109.47038 * 301.13235 * 18 17 7 37 37 H 1.09004 * 109.47093 * 61.12636 * 18 17 7 38 38 H 1.07998 * 120.00229 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 -0.0053 5 6 4.2723 0.0002 0.0000 6 6 5.7793 0.0011 0.0000 7 7 6.2690 0.0076 1.3850 8 6 7.7177 0.2467 1.4301 9 6 8.1428 0.4884 2.8556 10 1 7.4006 0.5454 3.6381 11 6 9.4792 0.6368 3.1607 12 7 10.3829 0.5670 2.2078 13 14 10.0061 0.9357 4.9277 14 1 8.8068 0.9709 5.8028 15 1 10.9082 -0.1589 5.3672 16 1 10.7223 2.2335 5.0178 17 6 5.9202 -1.2429 2.0725 18 6 6.6209 -2.4160 1.3842 19 6 6.2501 -3.6719 2.0563 20 7 5.9638 -4.6412 2.5750 21 6 3.5821 -1.1970 0.0058 22 6 2.1986 -1.1976 0.0059 23 35 1.2536 -2.8356 0.0146 24 1 -0.3634 0.0049 1.0276 25 1 -0.3634 0.8875 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6583 2.1325 0.0004 28 1 4.1201 2.1328 -0.0090 29 1 6.1432 -0.8910 -0.5098 30 1 6.1422 0.8890 -0.5177 31 1 8.2421 -0.6244 1.0373 32 1 7.9607 1.1204 0.8254 33 1 11.3231 0.6710 2.4226 34 1 6.2414 -1.1875 3.1127 35 1 4.8410 -1.3906 2.0329 36 1 6.3150 -2.4592 0.3389 37 1 7.7007 -2.2784 1.4413 38 1 4.1226 -2.1320 0.0104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152829219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:10 Heat of formation + Delta-G solvation = 50.733262 kcal Electronic energy + Delta-G solvation = -20512.562887 eV Core-core repulsion = 17401.038834 eV Total energy + Delta-G solvation = -3111.524053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 336.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76700 -37.70139 -35.96386 -33.54729 -32.58257 -32.05105 -30.50656 -29.37444 -28.52512 -26.35971 -24.71086 -23.28090 -22.56694 -20.91671 -19.72896 -17.49575 -16.42935 -15.98366 -15.81200 -15.30856 -15.07798 -14.51581 -14.29366 -14.07202 -13.71014 -13.56029 -13.44604 -12.93180 -12.55599 -12.33893 -12.21830 -12.06859 -11.99746 -11.64585 -11.40517 -11.29625 -11.14379 -10.97852 -10.80946 -10.70548 -10.63423 -10.26140 -10.16209 -9.93878 -9.32993 -8.78412 -8.55451 -8.47237 -7.44947 -6.12647 -4.14191 1.14845 1.28399 1.61619 3.08899 3.12067 3.26602 3.35430 3.39505 3.59278 4.31465 4.38192 4.67314 4.72712 4.93265 5.03920 5.10641 5.24096 5.33790 5.37198 5.46211 5.46812 5.54308 5.60441 5.70085 5.76162 5.93575 5.95303 6.10998 6.19743 6.24696 6.38813 6.55887 6.66676 6.85672 7.09229 7.16539 7.67880 7.83355 7.93961 8.00520 8.37109 8.94234 9.51466 10.97610 Molecular weight = 336.05amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.003537 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.173131 B = 7914.280959 C = 8946.599787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.067 4.067 3 C -0.117 4.117 4 C -0.078 4.078 5 C -0.062 4.062 6 C 0.082 3.918 7 N -0.520 5.520 8 C 0.185 3.815 9 C -0.510 4.510 10 H 0.065 0.935 11 C 0.059 3.941 12 N -0.896 5.896 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.069 3.931 18 C -0.075 4.075 19 C 0.222 3.778 20 N -0.457 5.457 21 C -0.084 4.084 22 C -0.093 4.093 23 Br -0.060 7.060 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.006 0.994 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.174 -1.341 -8.727 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.069 4.069 3 C -0.136 4.136 4 C -0.097 4.097 5 C -0.064 4.064 6 C -0.046 4.046 7 N -0.243 5.243 8 C 0.061 3.939 9 C -0.548 4.548 10 H 0.083 0.917 11 C -0.143 4.143 12 N -0.536 5.536 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.061 4.061 18 C -0.117 4.117 19 C -0.095 4.095 20 N -0.135 5.135 21 C -0.105 4.105 22 C -0.172 4.172 23 Br 0.025 6.975 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.024 0.976 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.972 -2.986 -7.731 20.703 hybrid contribution 1.278 0.245 0.326 1.341 sum -17.694 -2.741 -7.405 19.376 Atomic orbital electron populations 1.20955 0.90754 1.03298 1.02897 1.19711 0.96264 0.91694 0.99220 1.20999 0.94288 0.96873 1.01426 1.21209 0.93676 0.98332 0.96493 1.19936 0.96308 0.92177 0.97950 1.21156 0.89205 1.01794 0.92470 1.62440 1.19350 1.30969 1.11512 1.19898 0.79408 0.96389 0.98205 1.21157 0.91766 1.48793 0.93091 0.91676 1.24942 0.96636 0.95387 0.97327 1.69942 1.01238 1.50370 1.32036 0.86504 0.78696 0.77792 0.84856 1.19609 1.21118 1.21008 1.22106 0.98332 0.85470 1.00216 1.20251 1.05597 0.86656 0.99202 1.29247 0.92621 0.94307 0.93361 1.81144 1.10074 1.12327 1.09976 1.21021 0.91768 0.98762 0.98900 1.21615 0.94581 0.90768 1.10243 1.96647 1.75730 1.27354 1.97744 0.90718 0.91239 0.90810 0.85436 0.85037 0.94004 0.89690 0.97635 0.95058 0.92880 0.88891 0.91663 0.88477 0.85775 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.55 36.01 0.34 -0.74 16 2 C -0.07 -0.75 5.88 -104.60 -0.62 -1.37 16 3 C -0.12 -1.27 9.70 -39.59 -0.38 -1.66 16 4 C -0.08 -0.95 9.70 -39.58 -0.38 -1.33 16 5 C -0.06 -0.82 4.89 -104.63 -0.51 -1.33 16 6 C 0.08 1.17 4.93 -4.98 -0.02 1.14 16 7 N -0.52 -9.21 4.69 -237.52 -1.11 -10.32 16 8 C 0.19 4.07 4.49 -4.98 -0.02 4.04 16 9 C -0.51 -12.80 8.40 -34.44 -0.29 -13.09 16 10 H 0.07 1.66 7.29 -52.48 -0.38 1.27 16 11 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -24.57 13.29 55.43 0.74 -23.83 16 13 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.07 1.14 4.75 -3.82 -0.02 1.12 16 18 C -0.08 -1.12 4.95 -29.52 -0.15 -1.26 16 19 C 0.22 3.62 15.43 -20.76 -0.32 3.30 16 20 N -0.46 -8.37 18.54 42.16 0.78 -7.58 16 21 C -0.08 -1.08 7.65 -39.56 -0.30 -1.38 16 22 C -0.09 -1.15 6.22 -39.52 -0.25 -1.40 16 23 Br -0.06 -0.70 31.79 -68.01 -2.16 -2.86 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.07 0.65 6.65 -51.93 -0.35 0.31 16 27 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.04 0.55 6.03 -51.93 -0.31 0.24 16 30 H 0.08 1.20 7.88 -51.93 -0.41 0.79 16 31 H 0.01 0.13 6.04 -51.93 -0.31 -0.18 16 32 H 0.03 0.74 7.93 -51.93 -0.41 0.33 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.09 1.73 6.94 -51.93 -0.36 1.37 16 35 H 0.06 1.01 5.93 -51.93 -0.31 0.70 16 36 H 0.10 1.21 5.72 -51.93 -0.30 0.91 16 37 H 0.12 2.05 6.35 -51.93 -0.33 1.72 16 38 H 0.13 1.58 7.31 -52.49 -0.38 1.20 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -28.01 335.88 -9.41 -37.43 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.68 Total: -0.93 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.02 Total: -12.51 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.40 Total: -41.74 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.16 Total: -2.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.01 -9.41 -37.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152829219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.159 kcal (2) G-P(sol) polarization free energy of solvation -28.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds