Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38363 * 119.92238 * 2 1 4 4 C 1.38445 * 120.27787 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 119.93897 * 180.02562 * 4 3 2 6 6 C 1.38094 * 120.11927 * 0.02562 * 4 3 2 7 7 C 1.39540 * 119.84204 * 0.02562 * 6 4 3 8 8 C 1.47851 * 120.13966 * 180.02562 * 7 6 4 9 9 O 1.21558 * 119.99832 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00119 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00084 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47208 * 179.97438 * 11 10 8 13 13 C 1.53352 * 109.41800 * 295.12674 * 12 11 10 14 14 C 1.53190 * 109.15070 * 178.67720 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46053 * 174.99519 * 12 11 10 26 26 C 1.37942 * 119.91511 * 180.27668 * 2 1 3 27 27 H 1.09002 * 109.47307 * 89.99905 * 1 2 3 28 28 H 1.09002 * 109.47519 * 210.00395 * 1 2 3 29 29 H 1.09008 * 109.47080 * 329.99946 * 1 2 3 30 30 H 1.07996 * 119.85875 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.07863 * 180.02562 * 6 4 3 32 32 H 0.97004 * 120.00152 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47010 * 59.99318 * 11 10 8 34 34 H 1.08996 * 109.46600 * 299.99324 * 11 10 8 35 35 H 1.09008 * 109.45887 * 55.02318 * 12 11 10 36 36 H 1.09004 * 109.68561 * 58.70472 * 13 12 11 37 37 H 1.09004 * 109.47287 * 298.51133 * 13 12 11 38 38 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 39 39 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 40 40 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 42 42 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 43 43 H 1.09003 * 109.49698 * 61.43697 * 25 12 11 44 44 H 1.08994 * 109.52761 * 301.35110 * 25 12 11 45 45 H 1.07992 * 120.06574 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2078 0.0005 5 17 4.4387 2.7175 0.0012 6 6 4.2820 0.0176 0.0005 7 6 3.5910 -1.1947 -0.0005 8 6 4.3342 -2.4728 0.0000 9 8 3.7296 -3.5274 -0.0014 10 7 5.6819 -2.4687 0.0021 11 6 6.4183 -3.7352 0.0021 12 6 7.9217 -3.4510 0.0040 13 6 8.3101 -2.7519 -1.3045 14 6 9.8099 -2.4407 -1.2820 15 7 10.5495 -3.6821 -1.0165 16 6 11.5516 -4.0902 -1.8557 17 1 11.5352 -3.8024 -2.8965 18 6 12.5888 -4.8738 -1.3686 19 7 13.3128 -5.5962 -2.1969 20 14 12.9570 -4.9029 0.4626 21 1 12.2229 -6.0270 1.0972 22 1 14.4160 -5.0837 0.6714 23 1 12.5245 -3.6209 1.0748 24 6 10.1931 -4.4775 0.1663 25 6 8.6895 -4.7688 0.1299 26 6 2.1950 -1.1956 -0.0058 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6537 2.1324 -0.0004 31 1 5.3620 0.0251 0.0014 32 1 6.1643 -1.6271 0.0029 33 1 6.1580 -4.3067 -0.8887 34 1 6.1554 -4.3082 0.8912 35 1 8.1681 -2.8051 0.8469 36 1 7.7473 -1.8239 -1.4061 37 1 8.0872 -3.4072 -2.1466 38 1 10.0206 -1.7147 -0.4966 39 1 10.1131 -2.0337 -2.2466 40 1 14.0373 -6.1440 -1.8565 41 1 10.7474 -5.4160 0.1561 42 1 10.4374 -3.9187 1.0697 43 1 8.4628 -5.4051 -0.7256 44 1 8.3949 -5.2758 1.0487 45 1 1.6547 -2.1307 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156536123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = -8.189223 kcal Electronic energy + Delta-G solvation = -26046.262391 eV Core-core repulsion = 22282.444048 eV Total energy + Delta-G solvation = -3763.818343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63215 -39.09737 -38.04419 -36.90895 -35.24780 -33.62703 -32.69432 -31.46360 -30.98780 -30.37127 -27.73106 -27.04423 -24.61814 -23.51709 -22.64702 -22.36569 -21.30837 -20.46036 -19.42645 -18.12516 -16.90814 -16.64361 -16.42057 -15.58385 -15.51048 -15.42552 -15.07784 -14.50043 -14.25961 -14.19958 -13.96956 -13.62782 -13.53088 -13.27606 -13.22425 -12.87271 -12.84926 -12.42721 -12.22053 -12.06966 -11.93273 -11.81539 -11.63321 -11.43460 -11.41615 -10.85641 -10.67195 -10.53638 -10.23913 -10.14017 -9.89345 -9.68542 -9.46620 -9.43397 -9.17178 -9.12128 -8.63172 -6.98973 -5.95601 -3.31389 0.31557 0.66012 1.63884 2.46363 2.94460 3.30940 3.34740 3.47456 3.49998 4.14320 4.19906 4.52013 4.57199 4.66029 4.73118 4.75874 4.88122 4.93741 5.05041 5.12782 5.14419 5.19138 5.23801 5.41138 5.52005 5.58950 5.64872 5.71686 5.74378 5.84555 5.86815 5.94434 6.02930 6.14239 6.17482 6.21810 6.34602 6.36948 6.46022 6.60713 6.63134 6.68208 6.94187 7.29718 7.95693 7.98048 8.32210 8.93559 9.71453 10.09223 11.20424 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.002360 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.492689 B =11859.124082 C =12814.919497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.090 4.090 4 C -0.037 4.037 5 Cl -0.062 7.062 6 C -0.085 4.085 7 C -0.113 4.113 8 C 0.556 3.444 9 O -0.535 6.535 10 N -0.718 5.718 11 C 0.123 3.877 12 C -0.092 4.092 13 C -0.130 4.130 14 C 0.148 3.852 15 N -0.606 5.606 16 C -0.260 4.260 17 H 0.085 0.915 18 C 0.022 3.978 19 N -0.908 5.908 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.126 3.874 25 C -0.125 4.125 26 C -0.058 4.058 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.400 0.600 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.063 0.937 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.104 14.694 6.419 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.109 4.109 4 C -0.064 4.064 5 Cl -0.033 7.033 6 C -0.104 4.104 7 C -0.117 4.117 8 C 0.343 3.657 9 O -0.413 6.413 10 N -0.369 5.369 11 C 0.000 4.000 12 C -0.111 4.111 13 C -0.169 4.169 14 C 0.022 3.978 15 N -0.330 5.330 16 C -0.388 4.388 17 H 0.103 0.897 18 C -0.177 4.177 19 N -0.551 5.551 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.000 4.000 25 C -0.165 4.165 26 C -0.077 4.077 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.236 0.764 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.261 13.947 6.369 29.550 hybrid contribution 0.776 0.498 1.016 1.372 sum -24.486 14.445 7.386 29.373 Atomic orbital electron populations 1.20831 0.89798 1.03481 1.03040 1.19866 0.96857 0.91929 0.99476 1.21144 0.91911 0.98941 0.98876 1.20768 0.92611 0.87397 1.05628 1.98400 1.77047 1.30903 1.96914 1.21215 1.00478 0.90215 0.98507 1.19942 0.94388 0.92602 1.04755 1.18109 0.82306 0.88433 0.76859 1.90790 1.68463 1.32251 1.49809 1.46015 1.05847 1.10682 1.74400 1.21609 0.91250 0.84670 1.02452 1.21378 0.91873 0.98801 0.99066 1.22146 0.98735 0.99147 0.96879 1.20904 0.89384 0.88264 0.99222 1.44349 1.39242 1.21366 1.28011 1.18920 0.98912 1.29479 0.91478 0.89749 1.25289 0.96674 0.98419 0.97287 1.69838 1.22600 1.28229 1.34465 0.86941 0.76156 0.78077 0.87418 1.21616 1.23193 1.19636 1.21328 0.92807 0.96046 0.89777 1.21985 0.97541 0.95574 1.01424 1.21291 0.92592 0.98755 0.95054 0.90496 0.90796 0.91024 0.84446 0.84438 0.76390 0.91046 0.91382 0.91105 0.93046 0.91565 0.96119 0.91890 0.92774 0.90844 0.95771 0.91280 0.92502 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.01 36.01 0.36 -0.16 16 2 C -0.08 -0.58 5.87 -104.68 -0.61 -1.19 16 3 C -0.09 -0.64 9.47 -39.46 -0.37 -1.01 16 4 C -0.04 -0.31 6.31 -39.56 -0.25 -0.56 16 5 Cl -0.06 -0.49 28.95 -51.86 -1.50 -1.99 16 6 C -0.08 -0.74 9.32 -39.15 -0.36 -1.10 16 7 C -0.11 -1.15 5.87 -104.97 -0.62 -1.76 16 8 C 0.56 6.94 7.77 -12.33 -0.10 6.84 16 9 O -0.54 -8.46 16.35 5.31 0.09 -8.37 16 10 N -0.72 -8.05 5.22 -61.25 -0.32 -8.37 16 11 C 0.12 1.57 5.07 -4.04 -0.02 1.55 16 12 C -0.09 -1.29 2.19 -90.42 -0.20 -1.49 16 13 C -0.13 -1.93 5.27 -26.45 -0.14 -2.07 16 14 C 0.15 2.77 6.50 -3.71 -0.02 2.74 16 15 N -0.61 -14.03 2.77 -172.32 -0.48 -14.51 16 16 C -0.26 -7.18 10.03 -15.06 -0.15 -7.34 16 17 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 18 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 19 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 20 Si 0.88 22.25 24.34 -169.99 -4.14 18.11 16 21 H -0.29 -7.00 6.62 56.52 0.37 -6.62 16 22 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.27 -6.69 6.64 56.52 0.38 -6.32 16 24 C 0.13 2.66 4.21 -3.71 -0.02 2.65 16 25 C -0.13 -2.09 5.36 -26.61 -0.14 -2.24 16 26 C -0.06 -0.53 9.24 -39.18 -0.36 -0.89 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.07 0.24 8.08 -51.92 -0.42 -0.18 16 30 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.14 1.00 6.41 -52.48 -0.34 0.67 16 32 H 0.40 3.66 5.69 -40.82 -0.23 3.43 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.05 0.62 7.16 -51.93 -0.37 0.25 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.07 1.72 4.50 -51.93 -0.23 1.49 16 42 H 0.02 0.51 7.07 -51.93 -0.37 0.14 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.14 1.29 7.65 -52.49 -0.40 0.89 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -32.47 371.84 -9.68 -42.15 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.61 Total: -0.13 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -3.10 Total: -5.48 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.02 Total: -49.90 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.47 -9.68 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156536123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.964 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds