Wall clock time and date at job start Tue Mar 31 2020 05:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.47055 * 2 1 4 4 C 1.37090 * 119.99947 * 96.13284 * 3 2 1 5 5 H 1.08010 * 119.99810 * 164.50319 * 4 3 2 6 6 C 1.38947 * 120.00304 * 344.77754 * 4 3 2 7 7 N 1.31404 * 120.00060 * 359.63255 * 6 4 3 8 8 Si 1.86801 * 119.99896 * 179.63014 * 6 4 3 9 9 H 1.48500 * 109.47056 * 90.00168 * 8 6 4 10 10 H 1.48507 * 109.47213 * 209.99991 * 8 6 4 11 11 H 1.48500 * 109.47355 * 329.99914 * 8 6 4 12 12 C 1.34777 * 119.99545 * 276.13332 * 3 2 1 13 13 O 1.21288 * 120.00484 * 356.28976 * 12 3 2 14 14 C 1.50706 * 119.99606 * 176.28804 * 12 3 2 15 15 H 1.08994 * 109.47420 * 52.59004 * 14 12 3 16 16 C 1.52996 * 109.46916 * 292.59040 * 14 12 3 17 17 C 1.53002 * 109.47070 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.46813 * 60.00277 * 17 16 14 19 19 C 1.53003 * 109.47213 * 299.99987 * 18 17 16 20 20 C 1.52996 * 109.47043 * 60.00003 * 19 18 17 21 21 H 1.09003 * 109.47127 * 60.00162 * 20 19 18 22 22 C 1.50700 * 109.47343 * 180.02562 * 20 19 18 23 23 O 1.21280 * 120.00507 * 102.33387 * 22 20 19 24 24 N 1.34777 * 119.99811 * 282.34108 * 22 20 19 25 25 C 1.46503 * 119.99869 * 185.10463 * 24 22 20 26 26 C 1.52998 * 109.47500 * 94.53192 * 25 24 22 27 27 C 1.46496 * 120.00396 * 5.09820 * 24 22 20 28 28 C 1.47197 * 109.46966 * 96.17736 * 27 24 22 29 29 N 9.07870 * 108.79904 * 315.94117 * 2 1 3 30 30 H 1.09000 * 109.47159 * 300.00206 * 1 2 3 31 31 H 1.08997 * 109.47047 * 60.00479 * 1 2 3 32 32 H 1.08994 * 109.47127 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47159 * 239.99794 * 2 1 3 34 34 H 1.08997 * 109.47047 * 119.99521 * 2 1 3 35 35 H 0.97007 * 120.00386 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.47313 * 300.00164 * 16 14 12 37 37 H 1.09002 * 109.47426 * 59.99898 * 16 14 12 38 38 H 1.09001 * 109.47023 * 179.97438 * 17 16 14 39 39 H 1.08989 * 109.47173 * 300.00462 * 17 16 14 40 40 H 1.09003 * 109.47209 * 59.99978 * 18 17 16 41 41 H 1.09001 * 109.47401 * 180.02562 * 18 17 16 42 42 H 1.08995 * 109.47245 * 179.97438 * 19 18 17 43 43 H 1.09003 * 109.47026 * 300.00103 * 19 18 17 44 44 H 1.09000 * 109.46914 * 214.53331 * 25 24 22 45 45 H 1.09004 * 109.47274 * 334.53223 * 25 24 22 46 46 H 1.09003 * 109.46928 * 64.98924 * 26 25 24 47 47 H 1.08997 * 109.47378 * 184.99206 * 26 25 24 48 48 H 1.09001 * 109.46944 * 304.99667 * 26 25 24 49 49 H 1.08997 * 109.47632 * 216.18557 * 27 24 22 50 50 H 1.09003 * 109.46824 * 336.18144 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3664 1.9852 1.1804 5 1 2.9526 2.8924 1.1706 6 6 1.9700 1.4274 2.3897 7 7 1.2553 0.3248 2.4016 8 14 2.4531 2.2448 3.9984 9 1 1.4064 3.2224 4.3907 10 1 2.5879 1.2123 5.0573 11 1 3.7489 2.9493 3.8261 12 6 2.1254 2.0581 -1.1606 13 8 1.8819 1.5030 -2.2111 14 6 2.5476 3.5048 -1.1529 15 1 3.4746 3.6098 -0.5893 16 6 1.4542 4.3516 -0.4986 17 6 1.8830 5.8203 -0.4903 18 6 2.1042 6.2951 -1.9278 19 6 3.1976 5.4482 -2.5822 20 6 2.7687 3.9796 -2.5905 21 1 1.8418 3.8750 -3.1544 22 6 3.8459 3.1453 -3.2344 23 8 4.5991 2.4905 -2.5454 24 7 3.9723 3.1270 -4.5761 25 6 4.9445 2.2315 -5.2081 26 6 4.2512 0.9285 -5.6109 27 6 3.1375 4.0022 -5.4026 28 6 3.8832 5.2296 -5.7255 29 7 4.4557 6.1762 -5.9765 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 0.9788 -0.0650 3.2458 36 1 0.5271 4.2466 -1.0623 37 1 1.2968 4.0136 0.5256 38 1 1.1039 6.4237 -0.0245 39 1 2.8099 5.9249 0.0735 40 1 1.1772 6.1905 -2.4917 41 1 2.4102 7.3413 -1.9219 42 1 3.3548 5.7862 -3.6064 43 1 4.1245 5.5529 -2.0183 44 1 5.3583 2.7121 -6.0946 45 1 5.7481 2.0131 -4.5047 46 1 3.5072 1.1356 -6.3801 47 1 4.9908 0.2286 -5.9998 48 1 3.7616 0.4931 -4.7398 49 1 2.8711 3.4857 -6.3247 50 1 2.2306 4.2612 -4.8563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161528045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:20 Heat of formation + Delta-G solvation = -37.526587 kcal Electronic energy + Delta-G solvation = -31723.015930 eV Core-core repulsion = 27750.768015 eV Total energy + Delta-G solvation = -3972.247914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.58627 -38.66843 -37.00472 -36.94630 -35.38941 -34.89210 -31.99935 -31.41155 -31.03227 -30.16718 -29.12185 -27.80455 -24.88844 -24.38198 -23.05302 -22.33965 -21.35126 -19.93272 -19.58661 -18.92729 -17.60240 -17.06848 -16.94537 -16.33869 -15.98776 -14.97804 -14.50395 -14.34071 -14.25577 -14.08698 -14.03984 -13.78024 -13.65866 -13.41151 -13.23776 -12.88040 -12.83400 -12.52229 -12.36597 -12.21339 -12.08810 -11.91871 -11.78362 -11.71222 -11.53074 -11.25930 -11.10155 -11.03048 -10.95556 -10.80271 -10.68486 -10.43522 -10.41650 -10.22454 -10.03319 -9.89746 -9.69175 -9.26995 -8.84569 -8.81376 -8.19828 -7.65498 -6.17023 -3.86058 2.26355 2.55664 2.93795 3.12104 3.21906 3.24115 3.29458 3.84610 4.01706 4.10304 4.59503 4.69898 4.80210 4.90974 5.03350 5.07096 5.13835 5.17893 5.34511 5.37277 5.46597 5.51371 5.56177 5.69630 5.75110 5.78998 5.79361 5.86877 6.01773 6.08058 6.23349 6.28618 6.35983 6.40649 6.45566 6.48604 6.57053 6.71039 6.80708 6.87734 6.91093 6.96646 7.14569 7.29000 7.37675 7.41748 7.64839 7.76470 7.96712 8.47513 8.56424 9.13742 9.65106 10.04290 10.69849 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.004445 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.494420 B = 6297.995414 C = 7409.621521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.123 3.877 3 N -0.439 5.439 4 C -0.314 4.314 5 H 0.097 0.903 6 C 0.030 3.970 7 N -0.871 5.871 8 Si 0.920 3.080 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.471 3.529 13 O -0.611 6.611 14 C -0.069 4.069 15 H 0.091 0.909 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.087 4.087 21 H 0.099 0.901 22 C 0.543 3.457 23 O -0.513 6.513 24 N -0.616 5.616 25 C 0.111 3.889 26 C -0.167 4.167 27 C 0.202 3.798 28 C 0.189 3.811 29 N -0.422 5.422 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.032 0.968 33 H 0.026 0.974 34 H 0.122 0.878 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.122 0.878 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.159 7.021 -10.667 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.001 3.999 3 N -0.156 5.156 4 C -0.443 4.443 5 H 0.115 0.885 6 C -0.173 4.173 7 N -0.512 5.512 8 Si 0.747 3.253 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 C 0.259 3.741 13 O -0.499 6.499 14 C -0.091 4.091 15 H 0.109 0.891 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.108 4.108 21 H 0.117 0.883 22 C 0.332 3.668 23 O -0.385 6.385 24 N -0.351 5.351 25 C -0.011 4.011 26 C -0.226 4.226 27 C 0.074 3.926 28 C -0.130 4.130 29 N -0.100 5.100 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.139 0.861 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.140 0.860 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.245 7.600 -10.940 13.379 hybrid contribution -0.042 -0.055 0.894 0.897 sum 1.203 7.545 -10.046 12.621 Atomic orbital electron populations 1.21871 0.97545 0.99072 1.00401 1.21565 0.93733 0.83422 1.01223 1.43687 1.55285 1.11425 1.05229 1.19717 1.31745 1.09734 0.83057 0.88544 1.25246 0.96207 0.96388 0.99422 1.70013 1.36159 1.18826 1.26164 0.86014 0.78953 0.78811 0.81479 1.20353 1.20878 1.19565 1.19786 0.82531 0.87727 0.84034 1.90470 1.57676 1.70419 1.31334 1.20836 1.00577 0.94302 0.93338 0.89134 1.21539 0.97039 0.93015 1.03341 1.21576 1.01490 0.96718 0.95889 1.21523 0.98352 0.98475 0.96900 1.21619 0.99787 0.92984 1.00700 1.21199 0.97683 0.93917 0.98046 0.88315 1.20589 0.84354 0.81106 0.80745 1.90700 1.43976 1.42491 1.61378 1.47867 1.40662 1.40475 1.06125 1.21429 0.91867 0.90159 0.97685 1.22127 1.00906 0.97111 1.02426 1.19020 0.92163 0.82709 0.98671 1.29952 0.94668 0.95127 0.93295 1.81127 1.08166 1.11883 1.08820 0.90956 0.95934 0.94937 0.95574 0.86094 0.92427 0.92349 0.88740 0.91959 0.91893 0.91784 0.92083 0.92346 0.91327 0.91339 0.89371 0.92711 0.91950 0.91049 0.86031 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.65 37.16 0.36 -2.67 16 2 C 0.12 3.09 5.28 -4.04 -0.02 3.07 16 3 N -0.44 -11.02 2.64 -114.81 -0.30 -11.32 16 4 C -0.31 -7.75 7.68 -14.94 -0.11 -7.86 16 5 H 0.10 2.28 5.80 -52.48 -0.30 1.98 16 6 C 0.03 0.72 5.36 -17.47 -0.09 0.62 16 7 N -0.87 -21.72 7.93 55.50 0.44 -21.27 16 8 Si 0.92 19.14 29.55 -169.99 -5.02 14.12 16 9 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 12 C 0.47 11.09 5.99 -10.98 -0.07 11.03 16 13 O -0.61 -15.30 14.62 4.13 0.06 -15.24 16 14 C -0.07 -1.32 0.85 -91.77 -0.08 -1.39 16 15 H 0.09 1.88 6.93 -51.93 -0.36 1.52 16 16 C -0.11 -1.87 4.93 -26.73 -0.13 -2.00 16 17 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 18 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 19 C -0.11 -1.46 5.00 -26.73 -0.13 -1.60 16 20 C -0.09 -1.37 0.84 -91.77 -0.08 -1.45 16 21 H 0.10 1.45 6.52 -51.93 -0.34 1.11 16 22 C 0.54 9.38 5.53 -10.99 -0.06 9.31 16 23 O -0.51 -11.14 14.82 4.14 0.06 -11.08 16 24 N -0.62 -8.08 2.44 -177.03 -0.43 -8.51 16 25 C 0.11 1.33 6.22 -4.04 -0.03 1.30 16 26 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 27 C 0.20 1.82 5.47 -6.83 -0.04 1.78 16 28 C 0.19 2.03 13.42 -20.82 -0.28 1.75 16 29 N -0.42 -5.55 18.53 42.09 0.78 -4.77 16 30 H 0.07 1.77 6.67 -51.93 -0.35 1.42 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.67 7.56 -51.93 -0.39 0.28 16 34 H 0.12 3.19 5.46 -51.93 -0.28 2.90 16 35 H 0.26 6.32 8.31 -40.82 -0.34 5.98 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.79 6.11 -51.93 -0.32 1.48 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.85 8.14 -51.94 -0.42 0.42 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.69 4.83 -51.93 -0.25 0.43 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.64 8.11 -51.93 -0.42 0.21 16 45 H 0.09 1.24 7.23 -51.93 -0.38 0.87 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.12 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.13 1.03 5.59 -51.93 -0.29 0.74 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -31.23 386.96 -7.17 -38.39 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.89 Total: 6.74 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.70 Total: 7.11 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.49 Total: -45.87 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: 0.12 Total: -26.32 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.23 -7.17 -38.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161528045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.867 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds