Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39550 * 120.11510 * 138.93240 * 3 2 1 5 5 C 1.38622 * 119.76697 * 179.97438 * 4 3 2 6 6 N 1.39714 * 119.99759 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99885 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47055 * 35.00132 * 7 6 5 9 9 C 1.52998 * 109.46938 * 154.99882 * 7 6 5 10 10 C 1.50704 * 109.47215 * 294.99943 * 9 7 6 11 11 H 1.08000 * 119.99607 * 0.02562 * 10 9 7 12 12 C 1.37872 * 119.99901 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00231 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99967 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47168 * 89.99697 * 14 12 10 16 16 H 1.48501 * 109.47536 * 209.99796 * 14 12 10 17 17 H 1.48500 * 109.47147 * 330.00166 * 14 12 10 18 18 C 1.50700 * 109.47201 * 274.99760 * 7 6 5 19 19 C 1.38231 * 119.99825 * 319.86887 * 18 7 6 20 20 C 1.38243 * 120.00070 * 180.02562 * 19 18 7 21 21 C 1.38235 * 119.99602 * 0.07188 * 20 19 18 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00292 * 140.00025 * 18 7 6 24 24 C 1.39026 * 120.00483 * 0.25180 * 5 4 3 25 25 C 1.38213 * 120.22691 * 359.49341 * 24 5 4 26 26 C 1.38014 * 120.23496 * 0.50567 * 25 24 5 27 27 N 1.48015 * 120.00281 * 179.72453 * 26 25 24 28 28 O 1.21797 * 120.00290 * 0.02668 * 27 26 25 29 29 O 1.21808 * 120.00100 * 180.02562 * 27 26 25 30 30 H 1.08002 * 120.11361 * 359.97438 * 4 3 2 31 31 H 0.97001 * 119.99536 * 359.97438 * 6 5 4 32 32 H 1.09007 * 109.47393 * 54.99975 * 9 7 6 33 33 H 1.09002 * 109.47408 * 174.99952 * 9 7 6 34 34 H 0.97003 * 120.00096 * 179.97438 * 13 12 10 35 35 H 1.08001 * 120.00367 * 0.10906 * 19 18 7 36 36 H 1.08000 * 119.99728 * 180.34119 * 20 19 18 37 37 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00350 * 179.97438 * 22 21 20 39 39 H 1.08007 * 119.99474 * 359.97438 * 23 18 7 40 40 H 1.07997 * 119.88884 * 179.74409 * 24 5 4 41 41 H 1.08000 * 119.88478 * 180.25477 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2677 0.9111 -0.7930 5 6 4.6539 0.9057 -0.7871 6 7 5.3594 1.8147 -1.5796 7 6 6.8243 1.8086 -1.5738 8 1 7.1830 0.7853 -1.4633 9 6 7.3419 2.3911 -2.8905 10 6 6.9440 1.4885 -4.0299 11 1 6.3782 0.5896 -3.8344 12 6 7.3024 1.8103 -5.3217 13 7 7.9910 2.9052 -5.5598 14 14 6.8098 0.6912 -6.7339 15 1 5.4865 1.1117 -7.2604 16 1 7.8241 0.7823 -7.8147 17 1 6.7272 -0.7101 -6.2494 18 6 7.3255 2.6436 -0.4237 19 6 6.6966 3.8333 -0.1077 20 6 7.1567 4.5996 0.9469 21 6 8.2466 4.1767 1.6845 22 6 8.8761 2.9875 1.3680 23 6 8.4159 2.2212 0.3136 24 6 5.3422 -0.0080 0.0030 25 6 4.6492 -0.9062 0.7924 26 6 3.2690 -0.9093 0.7940 27 7 2.5320 -1.8776 1.6367 28 8 3.1435 -2.6713 2.3292 29 8 1.3140 -1.8806 1.6377 30 1 2.7311 1.6173 -1.4092 31 1 4.8791 2.4492 -2.1342 32 1 6.9119 3.3809 -3.0439 33 1 8.4284 2.4691 -2.8511 34 1 8.2434 3.1314 -6.4686 35 1 5.8449 4.1636 -0.6839 36 1 6.6618 5.5264 1.1972 37 1 8.6063 4.7756 2.5082 38 1 9.7279 2.6573 1.9440 39 1 8.9083 1.2925 0.0655 40 1 6.4222 -0.0133 0.0030 41 1 5.1895 -1.6108 1.4072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167248111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = 75.384597 kcal Electronic energy + Delta-G solvation = -27654.831683 eV Core-core repulsion = 23695.811217 eV Total energy + Delta-G solvation = -3959.020466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.07857 -40.18606 -39.10081 -37.06262 -36.41888 -35.94379 -33.45449 -32.25110 -31.73622 -30.82513 -29.97757 -28.83198 -26.14407 -24.99629 -24.21516 -22.61427 -22.25662 -22.22504 -20.47439 -19.77739 -18.74223 -18.13263 -17.42408 -17.26447 -16.49181 -16.40370 -16.08688 -15.15314 -14.91557 -14.72966 -14.67654 -14.34069 -13.90391 -13.60147 -13.55596 -13.33671 -13.24002 -12.92417 -12.83924 -12.70899 -12.33877 -11.80979 -11.75006 -11.41489 -11.35408 -11.30795 -11.05124 -11.03359 -11.00051 -10.95041 -10.70984 -10.46771 -9.97101 -9.53211 -9.46831 -8.82013 -8.67817 -8.52702 -7.83996 -6.30309 -4.36163 -0.18149 0.60707 1.44353 1.46510 1.50700 1.53131 2.52935 2.76793 3.13263 3.16748 3.22463 3.24228 3.50063 3.60186 3.92985 4.21543 4.27232 4.64037 4.77315 4.80615 4.94552 4.99695 5.07163 5.07729 5.21692 5.33697 5.36889 5.51483 5.61500 5.64971 5.74395 5.79603 5.95526 6.04202 6.12713 6.19666 6.46031 6.54798 6.58719 6.66953 6.91638 7.09707 7.20159 7.31505 7.36169 7.58108 7.65506 7.75293 7.97780 8.69440 9.31256 10.79730 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.007966 B = 0.004038 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3514.280489 B = 6932.098050 C = 9232.156303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C 0.242 3.758 3 C 0.096 3.904 4 C -0.156 4.156 5 C 0.285 3.715 6 N -0.681 5.681 7 C 0.179 3.821 8 H 0.088 0.912 9 C 0.024 3.976 10 C -0.530 4.530 11 H 0.059 0.941 12 C 0.064 3.936 13 N -0.888 5.888 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.087 4.087 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.180 4.180 25 C 0.004 3.996 26 C -0.095 4.095 27 N 0.044 4.956 28 O -0.170 6.170 29 O -0.186 6.186 30 H 0.152 0.848 31 H 0.413 0.587 32 H 0.026 0.974 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.152 0.848 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 0.429 12.128 12.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.048 5.048 2 C -0.075 4.075 3 C 0.090 3.910 4 C -0.182 4.182 5 C 0.169 3.831 6 N -0.300 5.300 7 C 0.075 3.925 8 H 0.106 0.894 9 C -0.013 4.013 10 C -0.568 4.568 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.526 5.526 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.088 4.088 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.132 4.132 24 C -0.205 4.205 25 C -0.017 4.017 26 C -0.185 4.185 27 N 0.557 4.443 28 O -0.384 6.384 29 O -0.394 6.394 30 H 0.170 0.830 31 H 0.250 0.750 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.169 0.831 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.048 1.024 11.535 11.627 hybrid contribution -0.024 -0.463 -0.933 1.042 sum -1.072 0.561 10.602 10.670 Atomic orbital electron populations 1.81158 1.11526 1.06175 1.05980 1.25088 0.92195 0.94998 0.95171 1.15184 0.84990 0.94933 0.95894 1.20595 0.92246 1.02024 1.03376 1.18057 0.90362 0.87476 0.87157 1.45420 1.06939 1.34580 1.43017 1.20538 0.77435 0.99067 0.95430 0.89369 1.19403 0.97571 0.96666 0.87676 1.21073 1.36095 1.08466 0.91168 0.92256 1.24971 0.94733 0.95137 0.99028 1.69938 1.37522 1.24091 1.21061 0.86598 0.78381 0.81108 0.81992 1.20578 1.21092 1.19760 1.20521 0.95973 0.95992 0.96308 1.20916 0.99904 0.94216 0.97057 1.21102 0.97120 0.99620 0.96150 1.21074 0.96682 0.96858 1.00073 1.21071 0.99835 0.95172 0.97723 1.21015 0.96581 1.00276 0.95321 1.20872 1.01368 0.97742 1.00484 1.20625 0.89957 0.96148 0.94930 1.20591 0.92330 0.99901 1.05663 1.43439 1.01089 1.00299 0.99511 1.94497 1.69832 1.34743 1.39293 1.94561 0.95682 1.77228 1.71904 0.82998 0.74997 0.95530 0.94315 0.92615 0.86442 0.86535 0.86617 0.86347 0.85961 0.83079 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.89 18.38 41.84 0.77 -5.12 16 2 C 0.24 3.42 12.72 -22.48 -0.29 3.13 16 3 C 0.10 1.18 5.73 -106.96 -0.61 0.56 16 4 C -0.16 -1.65 9.60 -38.95 -0.37 -2.03 16 5 C 0.28 3.17 6.62 -83.83 -0.56 2.62 16 6 N -0.68 -8.44 4.21 -53.33 -0.22 -8.66 16 7 C 0.18 2.57 1.82 -69.08 -0.13 2.45 16 8 H 0.09 1.24 6.33 -51.93 -0.33 0.91 16 9 C 0.02 0.48 4.49 -27.88 -0.13 0.35 16 10 C -0.53 -12.11 8.84 -34.44 -0.30 -12.41 16 11 H 0.06 1.33 7.74 -52.49 -0.41 0.92 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.89 -23.43 13.29 55.43 0.74 -22.69 16 14 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 C -0.09 -1.14 4.82 -104.63 -0.50 -1.64 16 19 C -0.10 -1.30 9.32 -39.58 -0.37 -1.67 16 20 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 21 C -0.13 -1.40 10.05 -39.59 -0.40 -1.80 16 22 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 23 C -0.11 -1.37 9.67 -39.58 -0.38 -1.75 16 24 C -0.18 -1.88 9.16 -39.30 -0.36 -2.24 16 25 C 0.00 0.04 9.54 -39.67 -0.38 -0.34 16 26 C -0.10 -1.21 6.88 -79.51 -0.55 -1.76 16 27 N 0.04 0.66 4.45 34.18 0.15 0.82 16 28 O -0.17 -2.56 18.44 -29.46 -0.54 -3.10 16 29 O -0.19 -3.14 16.35 -29.46 -0.48 -3.62 16 30 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.41 5.00 8.61 -40.82 -0.35 4.65 16 32 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.12 1.41 7.72 -52.49 -0.41 1.01 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.30 8.04 -52.48 -0.42 0.87 16 40 H 0.15 1.44 6.17 -52.49 -0.32 1.12 16 41 H 0.16 1.35 7.60 -52.49 -0.40 0.96 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -28.31 369.81 -9.56 -37.87 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.31 Total: 3.12 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -6.21 Total: -18.55 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 1.43 Total: -35.66 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -1.03 Total: -6.72 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.31 -9.56 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167248111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.256 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds