Wall clock time and date at job start Tue Mar 31 2020 05:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47017 * 2 1 4 4 C 1.52996 * 109.47301 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47059 * 179.97438 * 4 3 2 6 6 C 1.37606 * 119.99737 * 179.72124 * 5 4 3 7 7 N 1.31760 * 125.30298 * 359.97438 * 6 5 4 8 8 C 1.33397 * 109.96530 * 179.81646 * 7 6 5 9 9 C 1.39075 * 107.55249 * 0.43056 * 8 7 6 10 10 C 1.40610 * 119.22499 * 179.75880 * 9 8 7 11 11 O 1.21869 * 120.34737 * 180.02562 * 10 9 8 12 12 N 1.34906 * 119.30386 * 359.97438 * 10 9 8 13 13 C 1.46497 * 119.50107 * 179.97438 * 12 10 9 14 14 C 1.34425 * 120.99634 * 0.02562 * 12 10 9 15 15 O 1.21604 * 119.18965 * 179.97438 * 14 12 10 16 16 N 1.34636 * 121.61600 * 359.97438 * 14 12 10 17 17 C 1.46501 * 119.97218 * 179.97438 * 16 14 12 18 18 N 1.35922 * 125.29928 * 180.27597 * 6 5 4 19 19 C 1.46506 * 126.63605 * 0.02793 * 18 6 5 20 20 C 1.50694 * 109.47145 * 89.97427 * 19 18 6 21 21 H 1.08002 * 120.00111 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00053 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99826 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00070 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47122 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47169 * 119.99604 * 24 22 20 27 27 H 1.48493 * 109.47201 * 239.99802 * 24 22 20 28 28 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47269 * 299.99719 * 1 2 3 30 30 H 1.09003 * 109.46642 * 60.00392 * 1 2 3 31 31 H 1.08990 * 109.47421 * 240.00005 * 2 1 3 32 32 H 1.09002 * 109.47073 * 119.99290 * 2 1 3 33 33 H 1.09004 * 109.47038 * 59.99615 * 3 2 1 34 34 H 1.09000 * 109.46939 * 300.00268 * 3 2 1 35 35 H 1.09004 * 109.47066 * 60.00027 * 4 3 2 36 36 H 1.08994 * 109.46974 * 300.00175 * 4 3 2 37 37 H 0.97001 * 120.00384 * 0.02562 * 5 4 3 38 38 H 1.09000 * 109.46871 * 90.00622 * 13 12 10 39 39 H 1.08998 * 109.47479 * 210.00303 * 13 12 10 40 40 H 1.08993 * 109.47514 * 330.00862 * 13 12 10 41 41 H 1.09000 * 109.46751 * 359.97438 * 17 16 14 42 42 H 1.08993 * 109.47398 * 119.99736 * 17 16 14 43 43 H 1.08997 * 109.47013 * 240.00151 * 17 16 14 44 44 H 1.08998 * 109.47122 * 209.97453 * 19 18 6 45 45 H 1.09001 * 109.47088 * 329.97052 * 19 18 6 46 46 H 0.97002 * 120.00041 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.4111 3.0753 0.0062 7 7 6.3562 2.1573 0.0135 8 6 7.5565 2.7393 0.0140 9 6 7.3554 4.1154 0.0166 10 6 8.4704 4.9721 0.0229 11 8 8.3178 6.1812 0.0257 12 7 9.7107 4.4416 0.0268 13 6 10.8754 5.3302 0.0327 14 6 9.8941 3.1099 0.0242 15 8 11.0266 2.6672 0.0274 16 7 8.8545 2.2543 0.0183 17 6 9.0959 0.8094 0.0151 18 7 5.9805 4.3095 0.0117 19 6 5.2793 5.5958 0.0126 20 6 5.0331 6.0327 1.4337 21 1 5.3653 5.4139 2.2541 22 6 4.3828 7.2220 1.6865 23 7 3.9779 7.9752 0.6874 24 14 4.0770 7.7632 3.4480 25 1 4.6266 6.7467 4.3806 26 1 4.7453 9.0673 3.6883 27 1 2.6166 7.9061 3.6754 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9337 0.9287 -0.8891 36 1 3.9329 0.9289 0.8908 37 1 3.4279 3.5611 -0.0003 38 1 11.1603 5.5488 1.0618 39 1 11.7061 4.8440 -0.4788 40 1 10.6264 6.2590 -0.4804 41 1 10.1694 0.6204 0.0179 42 1 8.6460 0.3639 0.9023 43 1 8.6521 0.3688 -0.8776 44 1 5.8890 6.3423 -0.4965 45 1 4.3262 5.4904 -0.5055 46 1 3.5201 8.8117 0.8652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170624199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:10 Heat of formation + Delta-G solvation = 13.805427 kcal Electronic energy + Delta-G solvation = -29821.063990 eV Core-core repulsion = 25747.501656 eV Total energy + Delta-G solvation = -4073.562335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35437 -40.58528 -38.52949 -36.94080 -35.95459 -34.82986 -33.98548 -33.77571 -32.08766 -30.16804 -28.79640 -27.48291 -26.60711 -26.38435 -23.65307 -23.55928 -22.82896 -22.18899 -21.27547 -19.99324 -18.82446 -17.87745 -17.08906 -16.75852 -16.58147 -16.33286 -15.84473 -15.40035 -15.07760 -14.88277 -14.81775 -14.51149 -14.47130 -14.23512 -13.69957 -13.68697 -13.09360 -12.97970 -12.65364 -12.49338 -12.45518 -12.23869 -12.15445 -11.85246 -11.76230 -11.24770 -11.23806 -11.17547 -10.96531 -10.82692 -10.74551 -10.56011 -10.37497 -9.99211 -9.92992 -9.49014 -9.45715 -9.16037 -8.68523 -8.55636 -6.95659 -6.30410 -4.38488 1.65080 2.10092 2.37290 2.72114 3.16747 3.25312 3.28494 3.34782 3.40497 3.88293 3.97299 4.25540 4.60893 4.81343 4.82369 4.93337 4.96352 5.04795 5.29007 5.37584 5.41660 5.48840 5.54095 5.56319 5.57238 5.62951 5.68342 5.78539 5.81339 5.82232 5.86852 5.90223 5.98296 6.01373 6.15738 6.18355 6.26127 6.69040 6.87406 7.04143 7.30815 7.35448 7.58817 7.62556 7.80304 7.89025 8.02473 8.29973 8.50595 8.65495 9.28307 10.77196 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007230 B = 0.005132 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3871.898750 B = 5454.737870 C = 8774.175499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.135 4.135 4 C 0.148 3.852 5 N -0.703 5.703 6 C 0.540 3.460 7 N -0.548 5.548 8 C 0.316 3.684 9 C -0.154 4.154 10 C 0.585 3.415 11 O -0.499 6.499 12 N -0.557 5.557 13 C 0.089 3.911 14 C 0.711 3.289 15 O -0.559 6.559 16 N -0.509 5.509 17 C 0.093 3.907 18 N -0.411 5.411 19 C 0.237 3.763 20 C -0.536 4.536 21 H 0.063 0.937 22 C 0.070 3.930 23 N -0.887 5.887 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.281 1.281 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.418 0.582 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 -14.250 -2.987 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.173 4.173 4 C 0.024 3.976 5 N -0.347 5.347 6 C 0.186 3.814 7 N -0.282 5.282 8 C 0.083 3.917 9 C -0.271 4.271 10 C 0.381 3.619 11 O -0.373 6.373 12 N -0.302 5.302 13 C -0.052 4.052 14 C 0.413 3.587 15 O -0.435 6.435 16 N -0.237 5.237 17 C -0.049 4.049 18 N -0.098 5.098 19 C 0.120 3.880 20 C -0.574 4.574 21 H 0.081 0.919 22 C -0.134 4.134 23 N -0.524 5.524 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.207 1.207 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.256 0.744 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.529 -14.439 -3.034 14.764 hybrid contribution -0.497 1.574 1.008 1.934 sum 0.033 -12.864 -2.026 13.023 Atomic orbital electron populations 1.21770 0.95709 1.01524 1.02005 1.21400 0.95904 0.95976 1.02383 1.21850 0.94420 0.97824 1.03234 1.21207 0.93027 0.81348 1.02045 1.43207 0.99559 1.08956 1.82973 1.18794 0.86523 0.80186 0.95941 1.69478 0.95048 1.29823 1.33838 1.17659 0.85483 0.88264 1.00336 1.18277 0.85956 0.93123 1.29786 1.15424 0.81272 0.87943 0.77264 1.90955 1.84824 1.13980 1.47545 1.45833 1.09373 1.06188 1.68808 1.21796 0.85902 0.93904 1.03638 1.15397 0.84085 0.80727 0.78444 1.90943 1.19784 1.75889 1.56867 1.43605 1.01118 1.08307 1.70717 1.21837 1.03939 0.75918 1.03170 1.45355 1.02908 1.08113 1.53442 1.19905 0.92217 0.76319 0.99605 1.21205 1.38891 1.06484 0.90808 0.91864 1.24884 0.94862 0.95629 0.98041 1.69920 1.38365 1.13171 1.30973 0.86325 0.77872 0.78899 0.83741 1.19635 1.20536 1.20653 0.92803 0.92635 0.92685 0.91731 0.91679 0.90974 0.91170 0.91883 0.91816 0.74370 0.91196 0.89259 0.89045 0.88602 0.90858 0.90875 0.91683 0.93613 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.14 -1.29 5.33 -26.73 -0.14 -1.43 16 4 C 0.15 1.76 5.95 -4.04 -0.02 1.73 16 5 N -0.70 -10.96 5.67 -61.84 -0.35 -11.31 16 6 C 0.54 10.33 8.45 -320.33 -2.71 7.62 16 7 N -0.55 -10.14 10.77 -12.76 -0.14 -10.27 16 8 C 0.32 6.03 7.68 -154.61 -1.19 4.84 16 9 C -0.15 -3.34 6.91 -83.48 -0.58 -3.92 16 10 C 0.59 12.59 7.42 -15.31 -0.11 12.47 16 11 O -0.50 -12.19 15.56 5.04 0.08 -12.11 16 12 N -0.56 -10.07 2.96 -131.80 -0.39 -10.46 16 13 C 0.09 1.28 10.09 59.85 0.60 1.88 16 14 C 0.71 12.46 8.12 -87.36 -0.71 11.75 16 15 O -0.56 -9.91 15.02 5.27 0.08 -9.83 16 16 N -0.51 -8.53 3.06 -128.30 -0.39 -8.92 16 17 C 0.09 1.16 10.63 59.85 0.64 1.80 16 18 N -0.41 -9.06 2.82 -116.16 -0.33 -9.39 16 19 C 0.24 5.85 5.49 -5.19 -0.03 5.82 16 20 C -0.54 -14.34 9.39 -34.44 -0.32 -14.66 16 21 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 22 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 23 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 24 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.42 6.52 7.66 -40.82 -0.31 6.21 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.12 7.34 -51.93 -0.38 0.74 16 40 H 0.09 1.29 7.40 -51.93 -0.38 0.91 16 41 H 0.10 1.12 6.85 -51.93 -0.36 0.76 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.80 7.27 -51.93 -0.38 1.42 16 45 H 0.05 1.09 7.47 -51.93 -0.39 0.70 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -31.99 384.56 -11.21 -43.19 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.82 Total: 3.39 kcal Atomic # 6 Polarization: 32.29 SS G_CDS: -4.46 Total: 27.83 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -0.86 Total: -74.23 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.16 Total: -21.94 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.99 -11.21 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.000 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds