Wall clock time and date at job start Tue Mar 31 2020 05:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46816 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99682 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.37606 * 119.99737 * 179.72124 * 5 4 2 7 7 N 1.31760 * 125.30298 * 359.97438 * 6 5 4 8 8 C 1.33397 * 109.96530 * 179.81646 * 7 6 5 9 9 C 1.39075 * 107.55249 * 0.43056 * 8 7 6 10 10 C 1.40610 * 119.22499 * 179.75880 * 9 8 7 11 11 O 1.21869 * 120.34737 * 180.02562 * 10 9 8 12 12 N 1.34906 * 119.30386 * 359.97438 * 10 9 8 13 13 C 1.46497 * 119.50107 * 179.97438 * 12 10 9 14 14 C 1.34425 * 120.99634 * 0.02562 * 12 10 9 15 15 O 1.21604 * 119.18965 * 179.97438 * 14 12 10 16 16 N 1.34636 * 121.61600 * 359.97438 * 14 12 10 17 17 C 1.46501 * 119.97218 * 179.97438 * 16 14 12 18 18 N 1.35922 * 125.29928 * 180.27597 * 6 5 4 19 19 C 1.46506 * 126.63605 * 0.02793 * 18 6 5 20 20 C 1.50694 * 109.47145 * 89.97427 * 19 18 6 21 21 H 1.08002 * 120.00111 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00053 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99826 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00070 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47122 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47169 * 119.99604 * 24 22 20 27 27 H 1.48493 * 109.47201 * 239.99802 * 24 22 20 28 28 H 1.08993 * 109.47064 * 300.00120 * 1 2 3 29 29 H 1.09001 * 109.47284 * 60.00323 * 1 2 3 30 30 H 1.09000 * 109.46662 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47217 * 240.00281 * 2 1 3 32 32 H 1.09001 * 109.46930 * 299.99894 * 3 2 1 33 33 H 1.09000 * 109.46973 * 59.99593 * 3 2 1 34 34 H 1.08995 * 109.47053 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 36 36 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 37 37 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 38 38 H 1.09000 * 109.46871 * 90.00622 * 13 12 10 39 39 H 1.08998 * 109.47479 * 210.00303 * 13 12 10 40 40 H 1.08993 * 109.47514 * 330.00862 * 13 12 10 41 41 H 1.09000 * 109.46751 * 359.97438 * 17 16 14 42 42 H 1.08993 * 109.47398 * 119.99736 * 17 16 14 43 43 H 1.08997 * 109.47013 * 240.00151 * 17 16 14 44 44 H 1.08998 * 109.47122 * 209.97453 * 19 18 6 45 45 H 1.09001 * 109.47088 * 329.97052 * 19 18 6 46 46 H 0.97002 * 120.00041 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1877 -1.4361 2.2146 7 7 3.6410 -1.9591 3.2933 8 6 4.5878 -2.4719 4.0809 9 6 5.8135 -2.2494 3.4626 10 6 6.9903 -2.6919 4.0923 11 8 8.0754 -2.5073 3.5690 12 7 6.9057 -3.3219 5.2822 13 6 8.1290 -3.7852 5.9418 14 6 5.7158 -3.5319 5.8713 15 8 5.6777 -4.1037 6.9438 16 7 4.5652 -3.1246 5.3029 17 6 3.2882 -3.3729 5.9766 18 7 5.5372 -1.5875 2.2738 19 6 6.5118 -1.1388 1.2762 20 6 6.9562 0.2634 1.6034 21 1 6.5528 0.7700 2.4678 22 6 7.8772 0.9002 0.7988 23 7 8.3681 0.2836 -0.2540 24 14 8.4276 2.6387 1.2040 25 1 7.7322 3.1048 2.4305 26 1 9.8949 2.6529 1.4319 27 1 8.0936 3.5401 0.0722 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6055 -1.7198 1.2952 36 1 1.7517 -0.1582 2.1369 37 1 3.9825 -0.4620 0.4319 38 1 8.5134 -2.9971 6.5893 39 1 7.9074 -4.6699 6.5386 40 1 8.8765 -4.0332 5.1883 41 1 3.4687 -3.8941 6.9167 42 1 2.7923 -2.4231 6.1767 43 1 2.6535 -3.9866 5.3374 44 1 7.3745 -1.8049 1.2858 45 1 6.0528 -1.1531 0.2876 46 1 9.0157 0.7317 -0.8203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170624200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:13 Heat of formation + Delta-G solvation = 16.701915 kcal Electronic energy + Delta-G solvation = -30225.367043 eV Core-core repulsion = 26151.930309 eV Total energy + Delta-G solvation = -4073.436734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.35135 -40.58769 -38.52841 -37.35248 -36.02722 -34.82719 -33.88514 -33.38841 -32.08470 -29.91864 -27.48235 -27.27512 -27.15503 -26.38570 -25.46606 -23.57401 -22.83399 -22.35658 -20.39115 -20.03769 -18.79784 -17.86889 -17.08707 -16.76261 -16.58759 -16.35495 -15.66241 -15.28781 -15.07344 -14.89969 -14.74703 -14.52199 -14.44956 -14.20753 -13.54729 -13.28466 -13.04578 -12.92897 -12.67283 -12.58146 -12.37352 -12.23808 -12.16008 -12.12053 -11.84359 -11.24751 -11.12884 -11.06619 -10.97720 -10.76913 -10.74357 -10.57005 -10.37527 -9.99162 -9.92739 -9.48588 -9.45350 -9.15602 -8.68584 -8.54978 -6.94876 -6.30422 -4.38491 1.65487 2.10363 2.37568 2.73165 3.16513 3.25223 3.28457 3.35155 3.41155 3.89596 3.97724 4.25417 4.63328 4.76148 4.83486 4.93956 5.02128 5.04795 5.37865 5.47997 5.48982 5.54378 5.54984 5.57400 5.60819 5.66374 5.75500 5.80776 5.82172 5.85587 5.91106 5.95603 6.00822 6.01462 6.19146 6.27678 6.31667 6.69268 6.87583 7.04702 7.31254 7.35844 7.59069 7.62658 7.80351 7.89341 8.03023 8.30344 8.51046 8.65547 9.28279 10.77143 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007737 B = 0.005550 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3618.298458 B = 5043.851397 C = 8082.952183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.151 4.151 4 C 0.152 3.848 5 N -0.701 5.701 6 C 0.541 3.459 7 N -0.548 5.548 8 C 0.315 3.685 9 C -0.154 4.154 10 C 0.585 3.415 11 O -0.499 6.499 12 N -0.557 5.557 13 C 0.089 3.911 14 C 0.711 3.289 15 O -0.559 6.559 16 N -0.509 5.509 17 C 0.093 3.907 18 N -0.411 5.411 19 C 0.238 3.762 20 C -0.535 4.535 21 H 0.063 0.937 22 C 0.070 3.930 23 N -0.887 5.887 24 Si 0.904 3.096 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.281 1.281 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.417 0.583 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.990 -3.905 3.760 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.209 4.209 4 C 0.028 3.972 5 N -0.346 5.346 6 C 0.186 3.814 7 N -0.282 5.282 8 C 0.082 3.918 9 C -0.271 4.271 10 C 0.381 3.619 11 O -0.373 6.373 12 N -0.302 5.302 13 C -0.052 4.052 14 C 0.413 3.587 15 O -0.435 6.435 16 N -0.237 5.237 17 C -0.049 4.049 18 N -0.098 5.098 19 C 0.120 3.880 20 C -0.574 4.574 21 H 0.081 0.919 22 C -0.134 4.134 23 N -0.524 5.524 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.256 0.744 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.080 -4.092 4.027 14.284 hybrid contribution 1.396 1.262 -0.444 1.933 sum -11.684 -2.830 3.583 12.545 Atomic orbital electron populations 1.21738 0.94162 1.01973 1.02094 1.21365 0.96359 0.97012 0.98109 1.21887 1.02026 0.95223 1.01751 1.21276 0.77922 1.00225 0.97788 1.43228 1.06194 1.64202 1.20942 1.18795 0.79412 0.93957 0.89245 1.69481 1.29953 1.24843 1.03906 1.17664 0.90109 0.96681 0.87310 1.18271 0.93960 1.19416 0.95481 1.15426 0.88656 0.78042 0.79781 1.90955 1.29307 1.54115 1.62949 1.45831 1.08018 1.55054 1.21283 1.21795 0.84150 1.00980 0.98313 1.15397 0.79671 0.79900 0.83686 1.90942 1.85259 1.46760 1.20540 1.43605 1.07670 1.54951 1.17520 1.21835 0.81762 1.02752 0.98508 1.45350 1.05898 1.42062 1.16532 1.19898 0.86802 0.97111 0.84212 1.21204 1.26056 0.97758 1.12341 0.91858 1.24881 0.95203 0.98731 0.94588 1.69920 1.29675 1.37684 1.15132 0.86335 0.78855 0.83263 0.78449 1.19628 1.20544 1.20646 0.92369 0.92329 0.92443 0.90475 0.92665 0.92472 0.91805 0.91848 0.91740 0.74367 0.91203 0.89265 0.89047 0.88611 0.90865 0.90879 0.91698 0.93657 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.19 37.16 0.34 -0.77 16 2 C -0.11 -1.07 2.96 -90.62 -0.27 -1.34 16 3 C -0.15 -1.60 9.07 37.16 0.34 -1.26 16 4 C 0.15 1.83 5.34 -4.04 -0.02 1.81 16 5 N -0.70 -10.91 5.40 -61.84 -0.33 -11.24 16 6 C 0.54 10.30 8.45 -320.33 -2.71 7.59 16 7 N -0.55 -10.11 10.77 -12.76 -0.14 -10.24 16 8 C 0.32 6.01 7.68 -154.61 -1.19 4.83 16 9 C -0.15 -3.33 6.91 -83.48 -0.58 -3.91 16 10 C 0.59 12.57 7.42 -15.31 -0.11 12.45 16 11 O -0.50 -12.18 15.56 5.04 0.08 -12.10 16 12 N -0.56 -10.06 2.96 -131.80 -0.39 -10.45 16 13 C 0.09 1.28 10.09 59.85 0.60 1.88 16 14 C 0.71 12.45 8.12 -87.36 -0.71 11.74 16 15 O -0.56 -9.92 15.02 5.27 0.08 -9.84 16 16 N -0.51 -8.52 3.06 -128.30 -0.39 -8.92 16 17 C 0.09 1.16 10.63 59.85 0.64 1.80 16 18 N -0.41 -9.04 2.82 -116.16 -0.33 -9.36 16 19 C 0.24 5.84 5.49 -5.19 -0.03 5.81 16 20 C -0.54 -14.28 9.39 -34.44 -0.32 -14.61 16 21 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 22 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 23 N -0.89 -24.55 13.29 55.43 0.74 -23.82 16 24 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.79 7.18 -51.93 -0.37 0.42 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.42 6.56 6.84 -40.82 -0.28 6.28 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.12 7.34 -51.93 -0.38 0.74 16 40 H 0.09 1.29 7.40 -51.93 -0.38 0.91 16 41 H 0.10 1.12 6.85 -51.93 -0.36 0.76 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.79 7.27 -51.93 -0.38 1.42 16 45 H 0.05 1.08 7.47 -51.93 -0.39 0.69 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -31.76 381.94 -10.80 -42.56 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.73 Total: 3.91 kcal Atomic # 6 Polarization: 31.92 SS G_CDS: -4.12 Total: 27.81 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -0.84 Total: -74.03 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.16 Total: -21.94 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.76 -10.80 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.265 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds