Wall clock time and date at job start Tue Mar 31 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46768 * 299.99489 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99740 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 H 1.08995 * 109.47013 * 324.72129 * 12 11 9 14 14 C 1.50705 * 109.47438 * 84.72236 * 12 11 9 15 15 C 1.38236 * 119.99603 * 39.72326 * 14 12 11 16 16 C 1.38235 * 119.99139 * 179.78936 * 15 14 12 17 17 C 1.38234 * 120.00712 * 0.46495 * 16 15 14 18 18 C 1.38237 * 119.99325 * 359.76861 * 17 16 15 19 19 C 1.38233 * 119.99669 * 219.99795 * 14 12 11 20 20 C 1.50696 * 109.47047 * 204.72109 * 12 11 9 21 21 C 1.38288 * 120.00790 * 320.00063 * 20 12 11 22 22 C 1.37978 * 119.96040 * 180.02562 * 21 20 12 23 23 C 1.39142 * 120.21105 * 359.91811 * 22 21 20 24 24 C 1.38369 * 119.70042 * 359.96977 * 23 22 21 25 25 C 1.38107 * 120.00839 * 139.72166 * 20 12 11 26 26 C 1.50767 * 121.41054 * 180.27214 * 24 23 22 27 27 C 1.53079 * 109.67695 * 342.17873 * 26 24 23 28 28 C 1.53407 * 108.29195 * 48.20853 * 27 26 24 29 29 O 1.35847 * 118.49759 * 179.78291 * 23 22 21 30 30 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 32 32 H 1.07997 * 120.00182 * 0.02562 * 15 14 12 33 33 H 1.08005 * 119.99381 * 180.25532 * 16 15 14 34 34 H 1.07994 * 120.00480 * 179.79069 * 17 16 15 35 35 H 1.07998 * 119.99506 * 180.02562 * 18 17 16 36 36 H 1.07990 * 120.00363 * 359.97438 * 19 14 12 37 37 H 1.08000 * 120.02251 * 0.04924 * 21 20 12 38 38 H 1.07992 * 119.89240 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.84385 * 0.03784 * 25 20 12 40 40 H 1.09005 * 109.43896 * 222.12097 * 26 24 23 41 41 H 1.09001 * 109.40609 * 102.21843 * 26 24 23 42 42 H 1.09000 * 109.69829 * 288.51477 * 27 26 24 43 43 H 1.08998 * 109.73078 * 167.92980 * 27 26 24 44 44 H 1.09001 * 109.67991 * 175.56235 * 28 27 26 45 45 H 1.09006 * 109.71259 * 55.02949 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8820 2.3965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 1 0.3060 -4.8130 0.5844 14 6 0.8581 -5.2828 -1.4228 15 6 1.7647 -5.0649 -2.4433 16 6 1.4374 -5.4050 -3.7426 17 6 0.2001 -5.9540 -4.0228 18 6 -0.7082 -6.1674 -3.0028 19 6 -0.3794 -5.8314 -1.7028 20 6 2.0806 -5.9981 0.5896 21 6 3.4313 -6.0440 0.2965 22 6 4.2214 -7.0352 0.8416 23 6 3.6640 -7.9890 1.6875 24 6 2.3126 -7.9392 1.9808 25 6 1.5249 -6.9405 1.4325 26 6 1.6698 -8.9492 2.8972 27 6 2.5782 -10.1738 3.0328 28 6 4.0018 -9.6865 3.3316 29 8 4.4730 -8.9519 2.2011 30 1 -0.4849 0.8400 -0.0004 31 1 2.9191 -3.6476 0.0002 32 1 2.7300 -4.6325 -2.2250 33 1 2.1473 -5.2385 -4.5394 34 1 -0.0568 -6.2165 -5.0383 35 1 -1.6747 -6.5967 -3.2216 36 1 -1.0891 -5.9979 -0.9061 37 1 3.8676 -5.3043 -0.3583 38 1 5.2760 -7.0703 0.6116 39 1 0.4706 -6.9002 1.6630 40 1 0.7087 -9.2546 2.4832 41 1 1.5160 -8.5012 3.8789 42 1 2.5718 -10.7409 2.1020 43 1 2.2266 -10.8041 3.8496 44 1 4.6527 -10.5423 3.5106 45 1 3.9929 -9.0419 4.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185564458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:32 Heat of formation + Delta-G solvation = -32.817301 kcal Electronic energy + Delta-G solvation = -28556.930374 eV Core-core repulsion = 24696.758265 eV Total energy + Delta-G solvation = -3860.172109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.73419 -39.29963 -37.67676 -36.84333 -34.46271 -33.87433 -32.38045 -30.81915 -30.42653 -30.28614 -29.87230 -26.76350 -25.74854 -24.92046 -23.19140 -22.58927 -21.92172 -21.03847 -19.91676 -19.04272 -17.82925 -17.34882 -16.70716 -16.40358 -15.81115 -15.37164 -14.92020 -14.87403 -14.72141 -14.49199 -14.23891 -13.89389 -13.60856 -13.51134 -13.30408 -13.15563 -13.01633 -12.81462 -12.59606 -12.26846 -12.10515 -11.84167 -11.45088 -11.25174 -11.19396 -11.07843 -11.01293 -10.94729 -10.57360 -10.53378 -10.45759 -10.36683 -10.18080 -8.86132 -8.69419 -8.45939 -8.35216 -7.92961 -7.60070 -7.56437 -6.17760 -4.63187 1.41159 1.47253 1.86069 1.86920 3.13567 3.21866 3.23232 3.26100 3.80034 4.10836 4.23676 4.44051 4.52318 4.59343 4.60006 4.78940 4.86015 5.02579 5.13995 5.22797 5.30290 5.30691 5.34890 5.39794 5.42396 5.49480 5.53634 5.58592 5.66418 5.82095 5.85804 5.90435 5.96229 6.02810 6.06078 6.21291 6.35977 6.42324 6.48923 6.49200 6.78425 6.85487 6.89495 6.91505 7.13750 7.44119 7.44351 7.46381 7.89534 8.06954 8.32701 9.03613 9.51270 10.60610 10.79210 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.003584 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.368087 B = 7809.740762 C = 9334.917083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.575 6.575 11 N -0.756 5.756 12 C 0.233 3.767 13 H 0.091 0.909 14 C -0.067 4.067 15 C -0.096 4.096 16 C -0.125 4.125 17 C -0.131 4.131 18 C -0.125 4.125 19 C -0.106 4.106 20 C -0.097 4.097 21 C -0.075 4.075 22 C -0.145 4.145 23 C 0.122 3.878 24 C -0.159 4.159 25 C -0.074 4.074 26 C -0.077 4.077 27 C -0.159 4.159 28 C 0.061 3.939 29 O -0.319 6.319 30 H 0.267 0.733 31 H 0.380 0.620 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 -18.704 2.100 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.457 6.457 11 N -0.411 5.411 12 C 0.126 3.874 13 H 0.109 0.891 14 C -0.068 4.068 15 C -0.114 4.114 16 C -0.144 4.144 17 C -0.150 4.150 18 C -0.143 4.143 19 C -0.125 4.125 20 C -0.098 4.098 21 C -0.094 4.094 22 C -0.163 4.163 23 C 0.077 3.923 24 C -0.160 4.160 25 C -0.093 4.093 26 C -0.114 4.114 27 C -0.197 4.197 28 C -0.014 4.014 29 O -0.233 6.233 30 H 0.078 0.922 31 H 0.213 0.787 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.844 -18.623 2.063 19.353 hybrid contribution 0.645 0.883 0.045 1.095 sum 5.489 -17.740 2.108 18.689 Atomic orbital electron populations 1.70027 1.07006 1.27090 1.35388 1.25687 0.94596 1.00215 0.92642 0.86348 0.80530 0.81893 0.78184 1.18775 1.20208 1.20192 1.20887 0.93564 0.89292 1.54319 0.91446 1.18219 0.87264 0.82232 0.76143 1.90605 1.13985 1.86558 1.54522 1.46326 1.08375 1.03972 1.82428 1.18220 0.95038 0.83120 0.90978 0.89070 1.20336 0.93894 0.96453 0.96163 1.20892 0.99594 0.98557 0.92366 1.21046 0.96896 0.99914 0.96501 1.20995 0.94421 1.00952 0.98599 1.21002 0.99083 1.01138 0.93072 1.20948 0.96036 0.98918 0.96602 1.19901 0.94361 0.97252 0.98311 1.20760 0.93052 0.97118 0.98439 1.20509 1.00407 0.94603 1.00804 1.18620 0.88650 0.89298 0.95731 1.19687 0.92688 0.99784 1.03851 1.20739 0.99557 0.93273 0.95694 1.20453 0.98691 0.93451 0.98810 1.22226 0.95739 0.98313 1.03376 1.22919 0.95636 0.95568 0.87278 1.85972 1.43872 1.47589 1.45897 0.92215 0.78745 0.86449 0.86680 0.86857 0.86697 0.86522 0.85329 0.85375 0.85747 0.90046 0.90524 0.90508 0.89948 0.87836 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.94 11.83 55.55 0.66 -22.29 16 2 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 3 Si 0.91 20.18 29.56 -169.99 -5.02 15.15 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.54 -15.22 9.54 -35.63 -0.34 -15.56 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.56 15.54 7.70 -12.99 -0.10 15.44 16 10 O -0.57 -18.27 14.68 5.20 0.08 -18.19 16 11 N -0.76 -16.52 4.25 -57.49 -0.24 -16.76 16 12 C 0.23 4.48 2.38 -70.23 -0.17 4.32 16 13 H 0.09 1.96 7.30 -51.93 -0.38 1.58 16 14 C -0.07 -1.25 4.90 -104.62 -0.51 -1.76 16 15 C -0.10 -1.70 9.13 -39.58 -0.36 -2.06 16 16 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 17 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 18 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 19 C -0.11 -1.87 9.67 -39.58 -0.38 -2.25 16 20 C -0.10 -1.56 4.94 -104.65 -0.52 -2.08 16 21 C -0.08 -1.10 8.86 -39.66 -0.35 -1.45 16 22 C -0.14 -1.98 9.94 -39.34 -0.39 -2.37 16 23 C 0.12 1.66 6.47 -39.20 -0.25 1.40 16 24 C -0.16 -2.08 5.75 -104.44 -0.60 -2.68 16 25 C -0.07 -1.07 9.29 -39.53 -0.37 -1.44 16 26 C -0.08 -0.75 5.86 -27.81 -0.16 -0.91 16 27 C -0.16 -1.27 6.19 -26.48 -0.16 -1.43 16 28 C 0.06 0.53 7.03 37.37 0.26 0.79 16 29 O -0.32 -3.96 10.27 -19.26 -0.20 -4.15 16 30 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 31 H 0.38 7.36 6.85 -40.82 -0.28 7.08 16 32 H 0.12 1.98 7.28 -52.49 -0.38 1.59 16 33 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 37 H 0.13 1.75 6.49 -52.49 -0.34 1.41 16 38 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.12 1.64 8.03 -52.49 -0.42 1.22 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -35.18 376.40 -10.76 -45.93 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.00 Total: 11.42 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -5.70 Total: -16.78 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.41 Total: -39.05 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.12 Total: -22.35 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.18 -10.76 -45.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185564458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.117 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds