Wall clock time and date at job start Tue Mar 31 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.99774 * 2 1 4 4 C 1.54333 * 109.99005 * 238.96321 * 2 1 3 5 5 H 1.09004 * 110.51405 * 336.97514 * 4 2 1 6 6 C 1.50700 * 111.00281 * 100.12555 * 4 2 1 7 7 C 1.38227 * 120.00018 * 54.96201 * 6 4 2 8 8 C 1.38241 * 120.00026 * 179.80932 * 7 6 4 9 9 C 1.38230 * 119.99728 * 0.39821 * 8 7 6 10 10 C 1.38228 * 120.00325 * 359.85254 * 9 8 7 11 11 C 1.38232 * 119.99813 * 235.23340 * 6 4 2 12 12 C 1.55156 * 103.01900 * 218.66514 * 4 2 1 13 13 C 1.54905 * 101.58276 * 35.30484 * 12 4 2 14 14 H 1.08998 * 110.37017 * 204.14887 * 13 12 4 15 15 C 1.53007 * 110.36459 * 81.82961 * 13 12 4 16 16 N 1.47021 * 109.88186 * 121.09315 * 2 1 3 17 17 S 1.65595 * 125.65232 * 298.39445 * 16 2 1 18 18 O 1.42093 * 104.27935 * 153.64394 * 17 16 2 19 19 O 1.42105 * 104.27413 * 25.78444 * 17 16 2 20 20 C 1.81401 * 104.44822 * 269.71862 * 17 16 2 21 21 C 1.52997 * 109.47149 * 179.97438 * 20 17 16 22 22 C 1.50697 * 109.47466 * 179.97438 * 21 20 17 23 23 H 1.08001 * 119.99890 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00428 * 179.97438 * 22 21 20 25 25 N 1.31519 * 119.99563 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00432 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46838 * 89.99826 * 26 24 22 28 28 H 1.48497 * 109.47419 * 209.99978 * 26 24 22 29 29 H 1.48499 * 109.47011 * 330.00539 * 26 24 22 30 30 H 1.08997 * 109.46870 * 300.36227 * 1 2 3 31 31 H 1.09001 * 109.46763 * 60.35885 * 1 2 3 32 32 H 1.08989 * 109.46968 * 180.36007 * 1 2 3 33 33 H 1.08003 * 120.00536 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.99892 * 180.22716 * 8 7 6 35 35 H 1.08001 * 119.99996 * 179.83618 * 9 8 7 36 36 H 1.08003 * 120.00610 * 179.97438 * 10 9 8 37 37 H 1.07999 * 120.00370 * 359.97438 * 11 6 4 38 38 H 1.09003 * 111.00476 * 277.23045 * 12 4 2 39 39 H 1.09001 * 111.00196 * 153.37853 * 12 4 2 40 40 H 1.09000 * 109.47247 * 304.58794 * 15 13 12 41 41 H 1.09000 * 109.47380 * 64.59296 * 15 13 12 42 42 H 1.08999 * 109.46952 * 184.59441 * 15 13 12 43 43 H 1.09002 * 109.47085 * 299.99812 * 20 17 16 44 44 H 1.09001 * 109.47417 * 59.99938 * 20 17 16 45 45 H 1.09002 * 109.47153 * 299.99990 * 21 20 17 46 46 H 1.08998 * 109.47533 * 59.99620 * 21 20 17 47 47 H 0.97002 * 119.99731 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 1.3053 -1.4406 -1.6196 6 6 2.4748 0.2208 -2.3193 7 6 3.3941 1.2137 -2.0372 8 6 3.7797 2.0998 -3.0258 9 6 3.2396 1.9979 -4.2942 10 6 2.3164 1.0082 -4.5748 11 6 1.9337 0.1197 -3.5873 12 6 3.2864 -1.5183 -0.6915 13 6 2.8100 -1.8824 0.7368 14 1 3.6656 -2.0412 1.3932 15 6 1.9260 -3.1308 0.7012 16 7 2.0301 -0.7140 1.1839 17 16 1.7566 -0.2815 2.7588 18 8 1.8556 -1.5020 3.4797 19 8 0.5372 0.4470 2.7154 20 6 3.1396 0.8167 3.1733 21 6 2.9988 1.2900 4.6214 22 6 4.1480 2.2018 4.9660 23 1 4.9032 2.4220 4.2260 24 6 4.2350 2.7557 6.2256 25 7 3.3150 2.4878 7.1266 26 14 5.6600 3.8853 6.6530 27 1 5.2929 5.2881 6.3324 28 1 5.9641 3.7721 8.1021 29 1 6.8557 3.4940 5.8642 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3633 -1.0275 0.0065 33 1 3.8133 1.2957 -1.0452 34 1 4.5008 2.8733 -2.8064 35 1 3.5388 2.6918 -5.0658 36 1 1.8940 0.9288 -5.5657 37 1 1.2124 -0.6536 -3.8066 38 1 4.1670 -0.8768 -0.6579 39 1 3.4807 -2.4156 -1.2791 40 1 1.0985 -2.9704 0.0101 41 1 2.5163 -3.9848 0.3693 42 1 1.5332 -3.3264 1.6990 43 1 4.0795 0.2771 3.0569 44 1 3.1310 1.6793 2.5071 45 1 2.0589 1.8297 4.7375 46 1 3.0071 0.4276 5.2880 47 1 3.3760 2.8778 8.0127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195530989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:08 Heat of formation + Delta-G solvation = -60.339012 kcal Electronic energy + Delta-G solvation = -27898.021375 eV Core-core repulsion = 24172.099786 eV Total energy + Delta-G solvation = -3725.921589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27860 -38.41147 -36.63822 -35.41470 -33.89154 -33.04641 -32.07862 -31.16185 -31.08971 -29.32038 -28.10847 -25.57610 -24.57983 -23.03076 -22.34335 -21.73176 -21.04907 -20.19945 -18.40320 -17.73718 -16.90313 -16.47263 -15.94649 -15.42263 -15.35567 -15.06928 -14.62748 -14.53702 -13.97055 -13.83405 -13.76792 -13.56713 -13.37010 -13.35590 -12.97081 -12.69729 -12.52095 -12.46730 -12.07221 -11.75508 -11.70112 -11.62151 -11.53205 -11.42796 -11.30929 -11.14739 -11.08477 -10.97301 -10.79507 -10.70084 -10.48825 -10.38727 -10.37286 -9.76917 -9.34548 -9.09799 -8.84844 -8.72523 -8.50737 -6.12797 -4.18393 0.74613 1.15713 1.22015 3.04844 3.25629 3.31831 3.34558 3.56175 4.24610 4.30836 4.37487 4.38824 4.51078 4.74373 4.80573 4.82580 4.94953 5.03650 5.08116 5.15607 5.22313 5.26575 5.31485 5.41508 5.43471 5.46254 5.52045 5.65064 5.68846 5.73897 5.75885 5.81803 5.85654 5.93580 5.94615 6.13975 6.26214 6.30797 6.34442 6.37589 6.45497 6.49255 6.57058 6.61135 6.81957 7.29362 7.35555 7.80121 8.17252 8.84895 9.46325 10.98256 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003509 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.786974 B = 7977.302165 C = 9436.686680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.160 3.840 3 H 0.076 0.924 4 C -0.055 4.055 5 H 0.092 0.908 6 C -0.069 4.069 7 C -0.114 4.114 8 C -0.116 4.116 9 C -0.126 4.126 10 C -0.120 4.120 11 C -0.115 4.115 12 C -0.118 4.118 13 C 0.149 3.851 14 H 0.085 0.915 15 C -0.166 4.166 16 N -1.010 6.010 17 S 2.603 3.397 18 O -0.961 6.961 19 O -0.959 6.959 20 C -0.591 4.591 21 C 0.029 3.971 22 C -0.520 4.520 23 H 0.061 0.939 24 C 0.058 3.942 25 N -0.890 5.890 26 Si 0.900 3.100 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -6.885 -23.596 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.054 3.946 3 H 0.094 0.906 4 C -0.074 4.074 5 H 0.111 0.889 6 C -0.069 4.069 7 C -0.132 4.132 8 C -0.134 4.134 9 C -0.144 4.144 10 C -0.139 4.139 11 C -0.133 4.133 12 C -0.157 4.157 13 C 0.043 3.957 14 H 0.103 0.897 15 C -0.225 4.225 16 N -0.846 5.846 17 S 2.703 3.297 18 O -0.951 6.951 19 O -0.949 6.949 20 C -0.724 4.724 21 C -0.010 4.010 22 C -0.559 4.559 23 H 0.079 0.921 24 C -0.145 4.145 25 N -0.528 5.528 26 Si 0.727 3.273 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.853 -7.146 -22.793 23.959 hybrid contribution 1.334 1.023 0.062 1.682 sum -0.520 -6.124 -22.731 23.547 Atomic orbital electron populations 1.22540 0.94543 1.02789 1.04251 1.21305 0.94480 0.95312 0.83534 0.90635 1.21295 0.97937 0.95576 0.92629 0.88943 1.19696 0.96774 0.96180 0.94267 1.21111 0.97502 0.94916 0.99646 1.21178 0.99909 0.99071 0.93287 1.21147 0.97669 0.98640 0.96930 1.21118 0.98001 0.95603 0.99131 1.21042 1.00053 0.99480 0.92752 1.22958 0.97241 1.00502 0.94951 1.21464 0.93386 0.85490 0.95350 0.89671 1.22230 1.00192 0.96703 1.03374 1.59072 1.66945 1.36499 1.22083 1.05365 0.77310 0.75695 0.71310 1.93532 1.87825 1.43512 1.70250 1.93492 1.41795 1.74893 1.84757 1.30504 1.17105 1.14099 1.10667 1.18953 0.99539 0.97759 0.84782 1.20995 1.08673 1.28463 0.97785 0.92076 1.25071 0.96487 0.96641 0.96293 1.69959 1.34014 1.43924 1.04948 0.86471 0.82243 0.80869 0.77717 1.20447 1.20983 1.19754 0.88728 0.92035 0.92451 0.85689 0.86011 0.86318 0.86259 0.86152 0.90172 0.89917 0.92364 0.91782 0.91094 0.86370 0.86382 0.94894 0.94920 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 9.00 37.16 0.33 -1.96 16 2 C 0.16 1.93 3.15 -66.94 -0.21 1.72 16 3 H 0.08 0.91 6.78 -51.93 -0.35 0.56 16 4 C -0.05 -0.52 2.31 -89.93 -0.21 -0.72 16 5 H 0.09 0.79 7.21 -51.93 -0.37 0.41 16 6 C -0.07 -0.65 4.95 -104.63 -0.52 -1.17 16 7 C -0.11 -1.12 8.12 -39.58 -0.32 -1.44 16 8 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 9 C -0.13 -1.05 10.05 -39.59 -0.40 -1.45 16 10 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 11 C -0.12 -0.99 9.68 -39.58 -0.38 -1.37 16 12 C -0.12 -1.05 5.96 -24.59 -0.15 -1.20 16 13 C 0.15 1.71 3.33 -66.42 -0.22 1.48 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 15 C -0.17 -1.81 9.51 37.16 0.35 -1.46 16 16 N -1.01 -13.93 2.98 -97.50 -0.29 -14.22 16 17 S 2.60 47.62 5.64 -107.50 -0.61 47.01 16 18 O -0.96 -19.97 16.98 -57.54 -0.98 -20.94 16 19 O -0.96 -19.67 15.00 -57.54 -0.86 -20.53 16 20 C -0.59 -11.49 6.12 37.16 0.23 -11.26 16 21 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 22 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 23 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 24 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 25 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 26 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 30 H 0.09 1.46 5.65 -51.93 -0.29 1.16 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.68 8.14 -51.94 -0.42 0.26 16 33 H 0.13 1.20 7.32 -52.48 -0.38 0.82 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 37 H 0.12 0.83 7.98 -52.49 -0.42 0.41 16 38 H 0.08 0.70 7.12 -51.93 -0.37 0.33 16 39 H 0.08 0.60 8.04 -51.93 -0.42 0.19 16 40 H 0.06 0.58 7.38 -51.93 -0.38 0.20 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.94 7.50 -51.93 -0.39 0.55 16 43 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 44 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 45 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -33.83 386.89 -11.60 -45.43 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.57 Total: 1.32 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: -2.84 Total: -34.28 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.45 Total: -40.06 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -1.84 Total: -41.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.61 Total: 47.01 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.83 -11.60 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195530989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.906 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds