Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00498 * 2 1 4 4 H 1.48495 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47055 * 300.00014 * 3 2 1 6 6 H 1.48505 * 109.46907 * 59.99615 * 3 2 1 7 7 C 1.40051 * 119.99336 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99302 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00141 * 0.02562 * 7 2 1 10 10 O 1.21681 * 120.00168 * 359.97438 * 9 7 2 11 11 N 1.34783 * 119.99617 * 180.02562 * 9 7 2 12 12 C 1.46498 * 119.99411 * 179.97438 * 11 9 7 13 13 C 1.50705 * 109.46756 * 179.97438 * 12 11 9 14 14 C 1.38324 * 119.87350 * 269.72248 * 13 12 11 15 15 C 1.38016 * 120.12370 * 180.27093 * 14 13 12 16 16 C 1.39354 * 119.87475 * 0.02562 * 15 14 13 17 17 C 1.48365 * 120.12500 * 180.02562 * 16 15 14 18 18 C 1.39393 * 120.13842 * 179.69555 * 17 16 15 19 19 C 1.37710 * 119.83483 * 179.84692 * 18 17 16 20 20 C 1.39277 * 120.37749 * 0.52075 * 19 18 17 21 21 C 1.38509 * 119.89009 * 359.59985 * 20 19 18 22 22 C 1.38281 * 119.94135 * 0.18463 * 21 20 19 23 23 C 1.50793 * 121.40073 * 180.33626 * 21 20 19 24 24 C 1.53068 * 109.69176 * 342.21168 * 23 21 20 25 25 C 1.53398 * 108.29202 * 48.19652 * 24 23 21 26 26 O 1.35862 * 118.36768 * 179.46869 * 20 19 18 27 27 C 1.39356 * 119.75639 * 359.97438 * 16 15 14 28 28 C 1.38015 * 119.87451 * 0.02562 * 27 16 15 29 29 H 0.97004 * 119.99672 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99929 * 359.97438 * 11 9 7 31 31 H 1.09000 * 109.47675 * 60.00288 * 12 11 9 32 32 H 1.08999 * 109.47061 * 299.99432 * 12 11 9 33 33 H 1.08001 * 119.94309 * 0.27753 * 14 13 12 34 34 H 1.07999 * 120.06716 * 180.02562 * 15 14 13 35 35 H 1.08004 * 120.08591 * 0.10094 * 18 17 16 36 36 H 1.07999 * 119.81692 * 180.30088 * 19 18 17 37 37 H 1.08004 * 119.88772 * 179.97438 * 22 21 20 38 38 H 1.09006 * 109.43336 * 102.27666 * 23 21 20 39 39 H 1.08996 * 109.43913 * 222.18603 * 23 21 20 40 40 H 1.09001 * 109.69626 * 167.89703 * 24 23 21 41 41 H 1.08999 * 109.69466 * 288.50084 * 24 23 21 42 42 H 1.09003 * 109.68587 * 54.95760 * 25 24 23 43 43 H 1.09000 * 109.68747 * 175.48112 * 25 24 23 44 44 H 1.08000 * 120.06426 * 180.02562 * 27 16 15 45 45 H 1.08000 * 119.94400 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7008 1.3462 -0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0068 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2749 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9488 -3.6478 0.0016 12 6 1.2161 -4.9164 0.0022 13 6 2.1954 -6.0620 0.0027 14 6 2.6386 -6.5900 -1.1965 15 6 3.5311 -7.6427 -1.2021 16 6 3.9852 -8.1741 0.0035 17 6 4.9451 -9.3054 0.0040 18 6 5.4044 -9.8330 1.2097 19 6 6.2928 -10.8851 1.2030 20 6 6.7437 -11.4185 -0.0021 21 6 6.2906 -10.8943 -1.2014 22 6 5.3951 -9.8407 -1.1996 23 6 6.7505 -11.4503 -2.5255 24 6 8.0252 -12.2735 -2.3245 25 6 7.8007 -13.2285 -1.1452 26 8 7.6283 -12.4489 0.0389 27 6 3.5353 -7.6382 1.2087 28 6 2.6428 -6.5855 1.2023 29 1 -0.4850 0.8401 0.0004 30 1 2.9187 -3.6478 0.0020 31 1 0.5898 -4.9748 -0.8880 32 1 0.5892 -4.9735 0.8920 33 1 2.2858 -6.1777 -2.1303 34 1 3.8769 -8.0540 -2.1389 35 1 5.0613 -9.4203 2.1470 36 1 6.6448 -11.2968 2.1373 37 1 5.0427 -9.4323 -2.1353 38 1 5.9698 -12.0867 -2.9424 39 1 6.9544 -10.6292 -3.2126 40 1 8.2381 -12.8472 -3.2265 41 1 8.8609 -11.6089 -2.1052 42 1 6.9081 -13.8282 -1.3231 43 1 8.6656 -13.8822 -1.0323 44 1 3.8844 -8.0459 2.1459 45 1 2.2931 -6.1696 2.1356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195567355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = -40.192510 kcal Electronic energy + Delta-G solvation = -26704.652192 eV Core-core repulsion = 22844.160270 eV Total energy + Delta-G solvation = -3860.491922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.01447 -39.51141 -37.79109 -36.96624 -34.72192 -33.87607 -32.47125 -31.68628 -31.34264 -30.44969 -29.24324 -26.83333 -26.00437 -24.92277 -23.82374 -23.20864 -21.84766 -21.18685 -19.83572 -19.63559 -18.17271 -17.44310 -17.05268 -16.65902 -15.78530 -15.45339 -15.23768 -15.09574 -14.74514 -14.43641 -14.32221 -14.11681 -14.05387 -13.75498 -13.67132 -13.40018 -13.33141 -12.94667 -12.82591 -12.61391 -12.30260 -11.96131 -11.69735 -11.49635 -11.35539 -11.29978 -11.10421 -11.01891 -10.85990 -10.82967 -10.56717 -10.43908 -10.18634 -9.25225 -9.06498 -8.86061 -8.84792 -7.85317 -7.52542 -7.49792 -6.17588 -4.62968 0.61009 1.06206 1.50884 1.80532 2.93718 3.13778 3.21975 3.26674 3.41283 3.98727 4.14233 4.16694 4.24701 4.32196 4.48870 4.54267 4.59737 4.70021 4.85375 4.89705 5.00926 5.04918 5.06305 5.09120 5.15923 5.19240 5.24780 5.36263 5.48519 5.55150 5.57516 5.62262 5.74818 5.78265 5.84183 6.02217 6.06369 6.14332 6.17335 6.31409 6.41455 6.44458 6.56045 6.68125 6.88940 7.05976 7.12822 7.44751 7.94342 8.09426 8.34556 9.03607 9.54566 10.60708 10.79154 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024310 B = 0.001777 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.525990 B =15755.663611 C =15992.940512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.168 3.832 13 C -0.083 4.083 14 C -0.101 4.101 15 C -0.114 4.114 16 C -0.049 4.049 17 C -0.066 4.066 18 C -0.080 4.080 19 C -0.145 4.145 20 C 0.127 3.873 21 C -0.158 4.158 22 C -0.077 4.077 23 C -0.079 4.079 24 C -0.160 4.160 25 C 0.061 3.939 26 O -0.317 6.317 27 C -0.114 4.114 28 C -0.101 4.101 29 H 0.267 0.733 30 H 0.381 0.619 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.875 -26.309 -2.744 30.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.044 3.956 13 C -0.084 4.084 14 C -0.120 4.120 15 C -0.132 4.132 16 C -0.050 4.050 17 C -0.066 4.066 18 C -0.097 4.097 19 C -0.163 4.163 20 C 0.082 3.918 21 C -0.159 4.159 22 C -0.095 4.095 23 C -0.116 4.116 24 C -0.198 4.198 25 C -0.015 4.015 26 O -0.231 6.231 27 C -0.132 4.132 28 C -0.119 4.119 29 H 0.078 0.922 30 H 0.213 0.787 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.124 0.876 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.888 -26.266 -2.595 30.303 hybrid contribution 0.871 0.779 -0.258 1.197 sum 15.759 -25.487 -2.853 30.101 Atomic orbital electron populations 1.70036 1.07047 1.27133 1.35483 1.25715 0.94624 1.00294 0.92628 0.86319 0.80509 0.81746 0.78198 1.18772 1.20176 1.20159 1.20921 0.93632 0.89306 1.54266 0.91367 1.18261 0.87211 0.82381 0.76333 1.90598 1.14100 1.86741 1.54942 1.46204 1.08632 1.04202 1.82800 1.19834 0.92151 0.82175 1.01475 1.20304 0.97935 0.97085 0.93059 1.21064 0.96981 0.95838 0.98077 1.21131 0.98042 0.96995 0.97059 1.18646 0.97169 0.95501 0.93653 1.18677 0.98293 0.96534 0.93085 1.21037 0.95827 0.94941 0.97936 1.20514 1.00237 0.99243 0.96337 1.18760 0.90851 0.88900 0.93296 1.19716 1.02160 0.99812 0.94170 1.20983 0.95741 0.94835 0.97923 1.20484 0.97083 0.99926 0.94074 1.22239 0.98801 0.99345 0.99411 1.22960 1.02430 0.92458 0.83609 1.85992 1.57869 1.41635 1.37635 1.21148 0.97984 0.96913 0.97108 1.21072 0.96934 0.95841 0.98084 0.92174 0.78734 0.92501 0.92471 0.85662 0.86099 0.84917 0.85088 0.85388 0.90392 0.89865 0.89688 0.90348 0.91808 0.87555 0.85942 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 3 Si 0.91 20.28 29.56 -169.99 -5.02 15.26 16 4 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -15.53 9.54 -35.63 -0.34 -15.87 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 C 0.55 15.93 7.75 -12.98 -0.10 15.83 16 10 O -0.58 -18.98 15.02 5.21 0.08 -18.91 16 11 N -0.76 -17.31 5.54 -62.90 -0.35 -17.66 16 12 C 0.17 3.28 5.79 -5.19 -0.03 3.25 16 13 C -0.08 -1.29 5.25 -104.56 -0.55 -1.84 16 14 C -0.10 -1.41 9.68 -39.63 -0.38 -1.79 16 15 C -0.11 -1.40 9.43 -39.25 -0.37 -1.77 16 16 C -0.05 -0.60 5.88 -104.90 -0.62 -1.22 16 17 C -0.07 -0.73 5.87 -104.94 -0.62 -1.35 16 18 C -0.08 -0.80 9.42 -39.34 -0.37 -1.17 16 19 C -0.14 -1.43 9.92 -39.39 -0.39 -1.82 16 20 C 0.13 1.29 6.48 -39.10 -0.25 1.04 16 21 C -0.16 -1.49 5.75 -104.46 -0.60 -2.09 16 22 C -0.08 -0.77 9.05 -39.21 -0.35 -1.13 16 23 C -0.08 -0.52 5.85 -27.80 -0.16 -0.68 16 24 C -0.16 -0.86 6.19 -26.49 -0.16 -1.03 16 25 C 0.06 0.36 7.02 37.36 0.26 0.62 16 26 O -0.32 -3.01 10.27 -19.31 -0.20 -3.21 16 27 C -0.11 -1.39 9.43 -39.25 -0.37 -1.76 16 28 C -0.10 -1.41 9.68 -39.63 -0.38 -1.79 16 29 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 30 H 0.38 7.82 8.44 -40.82 -0.34 7.47 16 31 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 32 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.12 1.20 6.20 -52.49 -0.33 0.87 16 35 H 0.13 1.11 6.21 -52.48 -0.33 0.78 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.13 1.09 6.19 -52.48 -0.33 0.77 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.12 1.21 6.21 -52.49 -0.33 0.88 16 45 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -35.63 375.61 -10.90 -46.53 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.84 Total: 7.08 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -5.89 Total: -12.22 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.31 Total: -40.20 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.12 Total: -22.11 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.63 -10.90 -46.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195567355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.339 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds