Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35365 * 126.42429 * 2 1 4 4 C 1.41566 * 105.55328 * 180.10753 * 3 2 1 5 5 C 1.47504 * 126.44873 * 179.88198 * 4 3 2 6 6 O 1.21501 * 120.00253 * 359.70920 * 5 4 3 7 7 O 1.34745 * 119.99920 * 179.71599 * 5 4 3 8 8 C 1.45195 * 117.00119 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47609 * 329.99876 * 8 7 5 10 10 C 1.53000 * 109.47197 * 89.99561 * 8 7 5 11 11 C 1.50703 * 109.47324 * 209.99498 * 8 7 5 12 12 H 1.08002 * 119.99512 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00348 * 180.02562 * 11 8 7 14 14 N 1.31520 * 119.99640 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00240 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47029 * 89.99530 * 15 13 11 17 17 H 1.48500 * 109.47051 * 210.00031 * 15 13 11 18 18 H 1.48500 * 109.46740 * 329.99685 * 15 13 11 19 19 N 1.31939 * 107.09148 * 359.61720 * 4 3 2 20 20 N 1.28472 * 110.11211 * 0.23855 * 19 4 3 21 21 C 1.40206 * 124.95622 * 180.02562 * 20 19 4 22 22 C 1.39006 * 120.09112 * 127.69551 * 21 20 19 23 23 F 1.35106 * 120.04546 * 359.97438 * 22 21 20 24 24 C 1.38354 * 119.90804 * 179.70137 * 22 21 20 25 25 C 1.38259 * 120.08622 * 0.59606 * 24 22 21 26 26 C 1.38260 * 120.18282 * 359.68076 * 25 24 22 27 27 C 1.38346 * 120.08879 * 0.02562 * 26 25 24 28 28 F 1.35100 * 120.04480 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47228 * 274.65945 * 1 2 3 30 30 H 1.09003 * 109.46833 * 34.65997 * 1 2 3 31 31 H 1.08999 * 109.47142 * 154.65856 * 1 2 3 32 32 H 1.07989 * 127.22173 * 0.02562 * 3 2 1 33 33 H 1.09007 * 109.47081 * 60.00284 * 10 8 7 34 34 H 1.08999 * 109.47272 * 179.97438 * 10 8 7 35 35 H 1.09000 * 109.47555 * 299.99902 * 10 8 7 36 36 H 0.97000 * 119.99873 * 179.97438 * 14 13 11 37 37 H 1.07999 * 119.95348 * 180.27495 * 24 22 21 38 38 H 1.07998 * 119.90542 * 179.70019 * 25 24 22 39 39 H 1.07997 * 119.95327 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.0892 0.0000 4 6 3.6335 0.5849 -0.0026 5 6 4.8750 1.3813 -0.0060 6 8 4.8182 2.5950 -0.0122 7 8 6.0722 0.7629 -0.0024 8 6 7.2516 1.6097 -0.0067 9 1 7.0279 2.5418 -0.5256 10 6 7.6655 1.9150 1.4343 11 6 8.3775 0.8993 -0.7129 12 1 8.2223 -0.0899 -1.1176 13 6 9.6061 1.5118 -0.8414 14 7 9.7955 2.7158 -0.3472 15 14 11.0015 0.6316 -1.7175 16 1 10.9634 0.9612 -3.1649 17 1 12.2998 1.0686 -1.1441 18 1 10.8505 -0.8350 -1.5397 19 7 3.5465 -0.7316 0.0045 20 7 2.3137 -1.0929 0.0062 21 6 1.8659 -2.4216 0.0137 22 6 0.9461 -2.8416 0.9675 23 9 0.4820 -1.9701 1.8897 24 6 0.5022 -4.1520 0.9677 25 6 0.9815 -5.0463 0.0285 26 6 1.9008 -4.6339 -0.9183 27 6 2.3452 -3.3238 -0.9290 28 9 3.2431 -2.9217 -1.8549 29 1 -0.3633 0.0835 1.0242 30 1 -0.3633 0.8453 -0.5845 31 1 -0.3633 -0.9288 -0.4398 32 1 2.0066 2.1254 0.0004 33 1 7.8893 0.9829 1.9533 34 1 8.5511 2.5504 1.4311 35 1 6.8512 2.4288 1.9452 36 1 10.6600 3.1465 -0.4373 37 1 -0.2158 -4.4780 1.7056 38 1 0.6366 -6.0697 0.0343 39 1 2.2725 -5.3355 -1.6504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195577012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = -60.372177 kcal Electronic energy + Delta-G solvation = -28495.347417 eV Core-core repulsion = 24041.636477 eV Total energy + Delta-G solvation = -4453.710940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.61473 -49.35240 -42.86139 -39.42651 -39.04556 -35.63171 -34.04079 -33.19333 -32.85482 -30.98010 -29.99015 -29.32706 -27.20893 -25.32531 -25.07640 -23.70701 -22.96055 -21.18828 -20.92695 -19.31566 -18.70151 -17.92412 -17.85473 -16.94494 -16.53647 -16.31671 -16.20062 -15.81255 -15.75355 -15.66189 -15.29189 -14.89462 -14.62904 -14.40249 -14.02374 -13.47292 -13.36023 -13.10921 -12.95454 -12.60161 -12.53150 -12.48631 -12.30234 -12.12509 -11.80493 -11.17695 -11.00589 -10.83396 -10.75339 -10.30071 -10.22698 -10.16574 -9.83083 -9.47236 -9.38903 -9.01316 -8.89610 -8.82779 -8.42292 -6.11540 -4.17485 0.08813 0.32144 1.63665 2.03106 2.05473 2.67582 3.13227 3.30256 3.34797 3.39557 3.63277 3.70453 3.77321 4.02868 4.06148 4.35678 4.39719 4.46534 4.67264 4.89450 4.97193 5.11737 5.21502 5.24123 5.26469 5.34150 5.50028 5.50727 5.58089 5.76747 5.84575 5.99745 6.37903 6.69086 6.72748 6.97278 6.98250 7.19697 7.64931 7.78172 7.81039 7.99666 8.20790 8.69696 8.95924 9.47200 10.96165 Molecular weight = 336.11amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.003123 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.574531 B = 8963.246305 C =10149.984741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.015 3.985 3 C -0.167 4.167 4 C 0.028 3.972 5 C 0.542 3.458 6 O -0.508 6.508 7 O -0.338 6.338 8 C 0.214 3.786 9 H 0.049 0.951 10 C -0.155 4.155 11 C -0.518 4.518 12 H 0.070 0.930 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.912 3.088 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 N -0.222 5.222 20 N -0.248 5.248 21 C 0.059 3.941 22 C 0.141 3.859 23 F -0.116 7.116 24 C -0.154 4.154 25 C -0.050 4.050 26 C -0.154 4.154 27 C 0.157 3.843 28 F -0.106 7.106 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.172 0.828 33 H 0.037 0.963 34 H 0.100 0.900 35 H 0.017 0.983 36 H 0.266 0.734 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.371 -15.783 1.459 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.194 4.194 4 C -0.133 4.133 5 C 0.384 3.616 6 O -0.396 6.396 7 O -0.253 6.253 8 C 0.162 3.838 9 H 0.066 0.934 10 C -0.213 4.213 11 C -0.556 4.556 12 H 0.088 0.912 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.739 3.261 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 N -0.054 5.054 20 N -0.033 5.033 21 C -0.033 4.033 22 C 0.119 3.881 23 F -0.094 7.094 24 C -0.174 4.174 25 C -0.068 4.068 26 C -0.173 4.173 27 C 0.135 3.865 28 F -0.084 7.084 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.497 -16.222 1.481 28.591 hybrid contribution 0.569 0.724 -0.368 0.992 sum -22.929 -15.498 1.113 27.697 Atomic orbital electron populations 1.20422 0.86327 1.03574 1.03790 1.21633 0.95438 0.85604 1.07786 1.21543 0.89946 0.99670 1.08220 1.21313 0.93660 0.89206 1.09120 1.19433 0.83659 0.85156 0.73388 1.90798 1.87880 1.14045 1.46871 1.86651 1.14461 1.43137 1.81008 1.20723 0.77692 0.90531 0.94898 0.93364 1.22169 1.01859 1.00744 0.96497 1.21040 0.94534 1.03545 1.36460 0.91219 1.24881 0.98437 0.95054 0.95624 1.69906 1.24413 1.13518 1.45008 0.86261 0.80480 0.79832 0.79498 1.20404 1.20968 1.19585 1.74040 0.99189 1.15208 1.17005 1.42344 1.03797 1.03400 1.53711 1.17451 1.03120 0.83091 0.99681 1.17326 0.95798 0.88218 0.86747 1.91588 1.86545 1.68324 1.62987 1.21173 1.03412 0.90447 1.02318 1.21041 0.93680 1.00265 0.91824 1.21277 1.00103 0.93652 1.02286 1.17406 0.89780 0.92387 0.86912 1.91664 1.63806 1.90935 1.62033 0.89673 0.89206 0.91617 0.81077 0.94380 0.88114 0.96421 0.92451 0.82715 0.82863 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 8.73 36.00 0.31 -0.42 16 2 C 0.02 0.21 6.39 -81.84 -0.52 -0.31 16 3 C -0.17 -2.72 10.72 -39.34 -0.42 -3.14 16 4 C 0.03 0.57 7.16 -82.78 -0.59 -0.02 16 5 C 0.54 13.19 7.94 34.51 0.27 13.46 16 6 O -0.51 -13.01 16.18 -19.27 -0.31 -13.32 16 7 O -0.34 -9.10 9.87 -40.61 -0.40 -9.50 16 8 C 0.21 6.14 2.56 -27.88 -0.07 6.07 16 9 H 0.05 1.50 7.16 -51.93 -0.37 1.12 16 10 C -0.15 -4.17 9.33 37.16 0.35 -3.82 16 11 C -0.52 -15.37 8.90 -34.44 -0.31 -15.68 16 12 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 13 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 14 N -0.89 -26.11 11.32 55.43 0.63 -25.49 16 15 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 19 N -0.22 -4.41 11.47 33.41 0.38 -4.03 16 20 N -0.25 -3.92 3.22 -6.75 -0.02 -3.94 16 21 C 0.06 0.73 5.67 -83.45 -0.47 0.26 16 22 C 0.14 1.31 6.43 -39.25 -0.25 1.06 16 23 F -0.12 -1.18 14.66 2.25 0.03 -1.15 16 24 C -0.15 -0.84 10.02 -39.53 -0.40 -1.24 16 25 C -0.05 -0.21 10.04 -39.57 -0.40 -0.61 16 26 C -0.15 -1.03 10.02 -39.53 -0.40 -1.42 16 27 C 0.16 1.77 7.27 -39.25 -0.29 1.48 16 28 F -0.11 -1.56 16.71 2.25 0.04 -1.52 16 29 H 0.08 0.67 7.46 -51.93 -0.39 0.28 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.51 7.30 -51.93 -0.38 0.13 16 32 H 0.17 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.04 0.98 8.14 -51.92 -0.42 0.55 16 34 H 0.10 2.84 6.07 -51.93 -0.32 2.52 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.16 0.42 8.06 -52.49 -0.42 -0.01 16 38 H 0.15 0.11 8.06 -52.49 -0.42 -0.31 16 39 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -35.89 351.54 -6.61 -42.50 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -3.96 Total: -3.09 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -3.28 Total: -2.66 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.99 Total: -33.45 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.71 Total: -22.82 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.07 Total: -2.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.89 -6.61 -42.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195577012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.872 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds