Wall clock time and date at job start Tue Mar 31 2020 05:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35350 * 126.43261 * 2 1 4 4 C 1.41553 * 105.55988 * 180.10345 * 3 2 1 5 5 C 1.47513 * 126.45636 * 179.87530 * 4 3 2 6 6 O 1.21506 * 119.99757 * 359.71300 * 5 4 3 7 7 O 1.34739 * 120.00363 * 179.71088 * 5 4 3 8 8 C 1.45205 * 117.00064 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47041 * 29.99562 * 8 7 5 10 10 C 1.53001 * 109.46837 * 270.00195 * 8 7 5 11 11 C 1.50697 * 109.47150 * 150.00130 * 8 7 5 12 12 H 1.07998 * 120.00158 * 0.02562 * 11 8 7 13 13 C 1.37876 * 119.99687 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00328 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99704 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47430 * 60.00248 * 15 13 11 17 17 H 1.48497 * 109.46995 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47246 * 299.99997 * 15 13 11 19 19 N 1.31938 * 107.09784 * 359.61368 * 4 3 2 20 20 N 1.28481 * 110.09919 * 0.24213 * 19 4 3 21 21 C 1.40208 * 124.94809 * 180.02562 * 20 19 4 22 22 C 1.39021 * 120.08984 * 127.69413 * 21 20 19 23 23 F 1.35104 * 120.04340 * 359.97438 * 22 21 20 24 24 C 1.38345 * 119.90754 * 179.69928 * 22 21 20 25 25 C 1.38254 * 120.09048 * 0.59476 * 24 22 21 26 26 C 1.38260 * 120.18416 * 359.68045 * 25 24 22 27 27 C 1.38348 * 120.08455 * 0.02562 * 26 25 24 28 28 F 1.35105 * 120.04305 * 180.02562 * 27 26 25 29 29 H 1.08993 * 109.47919 * 274.66532 * 1 2 3 30 30 H 1.09008 * 109.46780 * 34.66713 * 1 2 3 31 31 H 1.09002 * 109.47255 * 154.65981 * 1 2 3 32 32 H 1.07999 * 127.21757 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.47351 * 60.00121 * 10 8 7 34 34 H 1.08999 * 109.47576 * 299.99898 * 10 8 7 35 35 H 1.09003 * 109.47282 * 179.97438 * 10 8 7 36 36 H 0.97000 * 120.00066 * 179.97438 * 14 13 11 37 37 H 1.08003 * 119.95229 * 180.27360 * 24 22 21 38 38 H 1.08006 * 119.91315 * 179.69979 * 25 24 22 39 39 H 1.07996 * 119.95713 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3108 1.0890 0.0000 4 6 3.6334 0.5846 -0.0025 5 6 4.8751 1.3809 -0.0060 6 8 4.8185 2.5946 -0.0123 7 8 6.0722 0.7624 -0.0022 8 6 7.2518 1.6092 -0.0054 9 1 7.0275 2.5465 0.5036 10 6 7.6670 1.8997 -1.4491 11 6 8.3769 0.9060 0.7091 12 1 8.2212 -0.0789 1.1238 13 6 9.6053 1.5198 0.8325 14 7 9.7951 2.7190 0.3271 15 14 11.0003 0.6478 1.7176 16 1 11.3053 -0.6291 1.0237 17 1 12.2065 1.5139 1.7144 18 1 10.5977 0.3659 3.1189 19 7 3.5466 -0.7319 0.0048 20 7 2.3136 -1.0930 0.0063 21 6 1.8658 -2.4217 0.0140 22 6 0.9458 -2.8416 0.9678 23 9 0.4817 -1.9700 1.8898 24 6 0.5019 -4.1519 0.9681 25 6 0.9811 -5.0464 0.0291 26 6 1.9005 -4.6342 -0.9177 27 6 2.3450 -3.3241 -0.9286 28 9 3.2430 -2.9221 -1.8545 29 1 -0.3635 0.0836 1.0241 30 1 -0.3633 0.8453 -0.5846 31 1 -0.3634 -0.9288 -0.4398 32 1 2.0068 2.1253 -0.0004 33 1 6.8531 2.4083 -1.9659 34 1 7.8912 0.9624 -1.9583 35 1 8.5522 2.5357 -1.4516 36 1 10.6592 3.1509 0.4142 37 1 -0.2162 -4.4778 1.7060 38 1 0.6363 -6.0699 0.0349 39 1 2.2728 -5.3361 -1.6493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195577014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:52 Heat of formation + Delta-G solvation = -60.379602 kcal Electronic energy + Delta-G solvation = -28491.979571 eV Core-core repulsion = 24038.268309 eV Total energy + Delta-G solvation = -4453.711262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.61029 -49.36302 -42.86149 -39.42670 -39.04493 -35.63033 -34.04073 -33.19440 -32.85535 -30.98186 -29.98999 -29.32687 -27.20962 -25.32392 -25.07642 -23.70812 -22.96172 -21.18671 -20.92703 -19.31566 -18.70354 -17.92706 -17.85530 -16.94622 -16.52167 -16.33818 -16.19498 -15.81047 -15.75544 -15.67039 -15.28442 -14.89606 -14.63182 -14.41094 -14.02248 -13.47765 -13.35541 -13.10292 -12.96251 -12.60011 -12.54009 -12.49447 -12.29687 -12.10682 -11.81401 -11.18030 -10.99788 -10.81464 -10.76512 -10.32630 -10.22036 -10.16620 -9.83081 -9.46866 -9.39065 -9.01352 -8.89769 -8.83608 -8.41983 -6.11430 -4.17569 0.08780 0.32044 1.63624 2.03001 2.05655 2.67504 3.13188 3.32147 3.34453 3.37321 3.62754 3.71032 3.77052 4.02830 4.05895 4.35596 4.39608 4.46462 4.67190 4.89457 4.97052 5.11547 5.21480 5.24058 5.26494 5.33914 5.49996 5.50685 5.58082 5.76728 5.84566 5.99624 6.37904 6.69196 6.72921 6.97776 6.98485 7.19951 7.64769 7.78309 7.81024 7.99629 8.20813 8.69622 8.95537 9.47071 10.96222 Molecular weight = 336.11amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.003074 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.466640 B = 9106.084305 C = 9954.916058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.015 3.985 3 C -0.167 4.167 4 C 0.028 3.972 5 C 0.542 3.458 6 O -0.508 6.508 7 O -0.338 6.338 8 C 0.214 3.786 9 H 0.049 0.951 10 C -0.155 4.155 11 C -0.519 4.519 12 H 0.069 0.931 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.913 3.087 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.222 5.222 20 N -0.248 5.248 21 C 0.059 3.941 22 C 0.141 3.859 23 F -0.116 7.116 24 C -0.154 4.154 25 C -0.050 4.050 26 C -0.154 4.154 27 C 0.156 3.844 28 F -0.107 7.107 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.172 0.828 33 H 0.017 0.983 34 H 0.037 0.963 35 H 0.100 0.900 36 H 0.266 0.734 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.367 -15.780 -1.557 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.194 4.194 4 C -0.133 4.133 5 C 0.384 3.616 6 O -0.396 6.396 7 O -0.253 6.253 8 C 0.162 3.838 9 H 0.066 0.934 10 C -0.213 4.213 11 C -0.557 4.557 12 H 0.087 0.913 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.740 3.260 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.200 1.200 19 N -0.054 5.054 20 N -0.033 5.033 21 C -0.033 4.033 22 C 0.119 3.881 23 F -0.094 7.094 24 C -0.173 4.173 25 C -0.068 4.068 26 C -0.173 4.173 27 C 0.135 3.865 28 F -0.085 7.085 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.492 -16.212 -1.579 28.586 hybrid contribution 0.568 0.710 0.415 0.999 sum -22.924 -15.502 -1.164 27.698 Atomic orbital electron populations 1.20422 0.86326 1.03555 1.03811 1.21629 0.95437 0.85601 1.07784 1.21537 0.89946 0.99675 1.08220 1.21313 0.93661 0.89210 1.09112 1.19435 0.83658 0.85156 0.73389 1.90799 1.87883 1.14042 1.46875 1.86651 1.14465 1.43143 1.81004 1.20718 0.77665 0.90529 0.94885 0.93368 1.22169 1.01852 1.00777 0.96467 1.20997 0.94599 1.03950 1.36142 0.91290 1.24874 0.98416 0.95025 0.95629 1.69892 1.24486 1.13667 1.44792 0.86318 0.80413 0.79273 0.80033 1.19937 1.21040 1.20001 1.74047 0.99179 1.15207 1.17003 1.42349 1.03800 1.03398 1.53720 1.17453 1.03100 0.83096 0.99671 1.17330 0.95780 0.88221 0.86733 1.91589 1.86533 1.68306 1.62990 1.21173 1.03404 0.90445 1.02305 1.21041 0.93687 1.00264 0.91822 1.21273 1.00112 0.93638 1.02295 1.17398 0.89798 0.92393 0.86927 1.91657 1.63845 1.90952 1.62061 0.89658 0.89213 0.91623 0.81075 0.96422 0.94353 0.88132 0.92383 0.82704 0.82859 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 8.73 36.00 0.31 -0.42 16 2 C 0.02 0.21 6.39 -81.85 -0.52 -0.31 16 3 C -0.17 -2.72 10.72 -39.35 -0.42 -3.14 16 4 C 0.03 0.57 7.16 -82.78 -0.59 -0.02 16 5 C 0.54 13.19 7.94 34.51 0.27 13.47 16 6 O -0.51 -13.01 16.18 -19.27 -0.31 -13.33 16 7 O -0.34 -9.10 9.87 -40.60 -0.40 -9.50 16 8 C 0.21 6.16 2.56 -27.88 -0.07 6.09 16 9 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 10 C -0.15 -4.17 9.33 37.16 0.35 -3.83 16 11 C -0.52 -15.40 8.90 -34.44 -0.31 -15.71 16 12 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 13 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 14 N -0.89 -26.12 11.32 55.43 0.63 -25.49 16 15 Si 0.91 21.92 29.54 -169.99 -5.02 16.89 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 19 N -0.22 -4.41 11.48 33.41 0.38 -4.03 16 20 N -0.25 -3.92 3.22 -6.76 -0.02 -3.94 16 21 C 0.06 0.73 5.67 -83.45 -0.47 0.26 16 22 C 0.14 1.32 6.43 -39.25 -0.25 1.07 16 23 F -0.12 -1.19 14.66 2.25 0.03 -1.16 16 24 C -0.15 -0.85 10.02 -39.54 -0.40 -1.25 16 25 C -0.05 -0.21 10.04 -39.57 -0.40 -0.61 16 26 C -0.15 -1.02 10.02 -39.53 -0.40 -1.41 16 27 C 0.16 1.75 7.27 -39.25 -0.29 1.47 16 28 F -0.11 -1.54 16.71 2.25 0.04 -1.50 16 29 H 0.08 0.68 7.46 -51.93 -0.39 0.29 16 30 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.51 7.30 -51.93 -0.38 0.13 16 32 H 0.17 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.10 2.83 6.07 -51.93 -0.32 2.52 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.16 0.43 8.06 -52.48 -0.42 0.01 16 38 H 0.15 0.11 8.06 -52.48 -0.42 -0.31 16 39 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -35.88 351.54 -6.61 -42.49 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.96 Total: -3.07 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.28 Total: -2.66 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.99 Total: -33.46 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.71 Total: -22.83 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.07 Total: -2.66 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.88 -6.61 -42.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195577014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.892 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds