Wall clock time and date at job start Tue Mar 31 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 120.00196 * 2 1 4 4 C 1.50701 * 120.00033 * 179.97438 * 2 1 3 5 5 O 1.42904 * 109.46940 * 0.02562 * 4 2 1 6 6 C 1.35915 * 116.99873 * 179.97438 * 5 4 2 7 7 C 1.38865 * 119.98376 * 359.97438 * 6 5 4 8 8 C 1.38248 * 120.24349 * 180.02562 * 7 6 5 9 9 C 1.37999 * 120.20658 * 0.02562 * 8 7 6 10 10 C 1.39590 * 119.96615 * 359.97438 * 9 8 7 11 11 C 1.47808 * 120.12272 * 179.97438 * 10 9 8 12 12 O 1.21561 * 120.00503 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99854 * 0.02571 * 11 10 9 14 14 C 1.39130 * 120.00135 * 175.71574 * 13 11 10 15 15 C 1.39509 * 119.83081 * 215.04816 * 14 13 11 16 16 C 1.36366 * 120.15934 * 179.75763 * 15 14 13 17 17 C 1.40876 * 119.83182 * 0.53026 * 16 15 14 18 18 C 1.41138 * 120.15802 * 179.69733 * 17 16 15 19 19 H 1.08004 * 119.99502 * 214.79462 * 18 17 16 20 20 C 1.39911 * 120.00263 * 34.79952 * 18 17 16 21 21 N 1.30870 * 119.99726 * 355.57645 * 20 18 17 22 22 Si 1.86798 * 120.00152 * 175.58084 * 20 18 17 23 23 H 1.48501 * 109.47099 * 89.99481 * 22 20 18 24 24 H 1.48500 * 109.47331 * 209.99626 * 22 20 18 25 25 H 1.48501 * 109.47203 * 329.99924 * 22 20 18 26 26 C 1.40884 * 119.67709 * 359.72240 * 17 16 15 27 27 C 1.36353 * 119.82810 * 359.97438 * 26 17 16 28 28 C 1.38443 * 119.98410 * 180.02562 * 6 5 4 29 29 H 1.08005 * 120.00218 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99946 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46782 * 269.99724 * 3 2 1 32 32 H 1.08999 * 109.46756 * 29.99740 * 3 2 1 33 33 H 1.08994 * 109.46975 * 149.99805 * 3 2 1 34 34 H 1.08995 * 109.47342 * 240.00280 * 4 2 1 35 35 H 1.09003 * 109.47303 * 119.99819 * 4 2 1 36 36 H 1.07999 * 119.87799 * 0.02562 * 7 6 5 37 37 H 1.07992 * 119.89557 * 179.97438 * 8 7 6 38 38 H 1.07999 * 120.01834 * 179.97438 * 9 8 7 39 39 H 0.97001 * 120.00166 * 355.71170 * 13 11 10 40 40 H 1.07995 * 119.92424 * 359.97438 * 15 14 13 41 41 H 1.08007 * 120.07998 * 180.22605 * 16 15 14 42 42 H 0.97003 * 119.99539 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.07884 * 179.97438 * 26 17 16 44 44 H 1.08004 * 119.91286 * 180.02562 * 27 26 17 45 45 H 1.08003 * 120.09847 * 0.27693 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1348 -2.3913 0.0005 6 6 1.6543 -3.6472 0.0004 7 6 3.0310 -3.8288 -0.0001 8 6 3.5652 -5.1039 -0.0007 9 6 2.7335 -6.2051 -0.0013 10 6 1.3483 -6.0326 -0.0008 11 6 0.4543 -7.2097 -0.0021 12 8 -0.7517 -7.0570 -0.0022 13 7 0.9762 -8.4523 -0.0032 14 6 0.1378 -9.5591 0.0856 15 6 0.5551 -10.6914 0.7855 16 6 -0.2632 -11.7781 0.8810 17 6 -1.5282 -11.7594 0.2612 18 6 -2.3781 -12.8826 0.3502 19 1 -3.0165 -13.1439 -0.4808 20 6 -2.3936 -13.6576 1.5150 21 7 -1.5590 -13.3935 2.4878 22 14 -3.6055 -15.0693 1.6815 23 1 -2.9894 -16.3150 1.1581 24 1 -3.9567 -15.2542 3.1125 25 1 -4.8340 -14.7612 0.9062 26 6 -1.9404 -10.6142 -0.4483 27 6 -1.1139 -9.5328 -0.5300 28 6 0.8107 -4.7449 -0.0002 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 2.2452 1.6197 -1.0276 32 1 1.4744 2.0647 0.5138 33 1 3.0159 1.1747 0.5138 34 1 2.6901 -1.3625 0.8906 35 1 2.6901 -1.3633 -0.8894 36 1 3.6869 -2.9707 0.0000 37 1 4.6367 -5.2386 -0.0015 38 1 3.1541 -7.1998 -0.0022 39 1 1.9363 -8.5751 -0.0660 40 1 1.5271 -10.7062 1.2559 41 1 0.0597 -12.6527 1.4263 42 1 -1.5696 -13.9310 3.2952 43 1 -2.9087 -10.5930 -0.9263 44 1 -1.4287 -8.6541 -1.0732 45 1 -0.2603 -4.6049 -0.0052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219778459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:14 Heat of formation + Delta-G solvation = -5.060923 kcal Electronic energy + Delta-G solvation = -26683.035985 eV Core-core repulsion = 22824.067483 eV Total energy + Delta-G solvation = -3858.968502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62566 -39.63605 -37.87061 -36.99341 -35.46051 -34.49954 -32.98089 -31.36115 -30.40645 -29.55328 -28.71289 -27.64387 -27.29254 -25.31538 -23.53712 -22.58419 -21.55009 -20.83688 -19.89926 -18.86510 -18.54136 -17.31443 -16.82009 -16.53777 -16.31602 -16.13813 -15.81479 -15.17661 -14.65920 -14.59370 -14.38636 -13.92750 -13.85691 -13.78561 -13.75343 -13.10536 -12.98225 -12.69694 -12.66202 -12.19230 -12.09473 -11.97293 -11.69656 -11.54255 -11.46666 -11.35493 -11.15734 -11.14634 -10.99077 -10.72326 -10.05164 -9.51105 -9.45264 -9.44196 -9.20333 -9.12978 -8.88633 -8.47195 -7.54590 -6.86338 -6.61824 -4.33963 0.72645 1.21865 1.82080 2.60045 2.74808 3.01984 3.09197 3.10696 3.14544 3.27330 3.67638 3.90289 3.98800 4.29541 4.54973 4.63806 4.68886 4.70789 4.77856 4.83397 4.94145 4.98272 5.05325 5.19910 5.24231 5.35523 5.49290 5.61355 5.65879 5.75230 6.02449 6.14240 6.18505 6.20754 6.22138 6.31035 6.45281 6.50531 6.74446 6.92983 7.06969 7.15174 7.20443 7.29826 7.64181 7.73903 7.86599 8.06459 8.24427 8.31677 8.61681 8.71818 8.92776 8.99840 10.29136 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.001820 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.850852 B =15379.235544 C =15986.732947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.151 4.151 3 C -0.112 4.112 4 C 0.097 3.903 5 O -0.310 6.310 6 C 0.122 3.878 7 C -0.192 4.192 8 C -0.086 4.086 9 C -0.127 4.127 10 C -0.081 4.081 11 C 0.539 3.461 12 O -0.523 6.523 13 N -0.641 5.641 14 C 0.001 3.999 15 C -0.119 4.119 16 C -0.141 4.141 17 C 0.100 3.900 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.811 5.811 22 Si 0.916 3.084 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.205 4.205 27 C -0.084 4.084 28 C -0.094 4.094 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.395 0.605 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.278 0.722 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.714 21.395 -3.287 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.169 4.169 4 C 0.022 3.978 5 O -0.224 6.224 6 C 0.077 3.923 7 C -0.211 4.211 8 C -0.104 4.104 9 C -0.146 4.146 10 C -0.085 4.085 11 C 0.327 3.673 12 O -0.401 6.401 13 N -0.284 5.284 14 C -0.091 4.091 15 C -0.139 4.139 16 C -0.161 4.161 17 C 0.098 3.902 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.438 5.438 22 Si 0.741 3.259 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.225 4.225 27 C -0.104 4.104 28 C -0.114 4.114 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.230 0.770 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.126 0.874 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.712 21.482 -3.034 24.655 hybrid contribution 0.256 -0.585 0.296 0.704 sum 11.968 20.897 -2.738 24.237 Atomic orbital electron populations 1.23829 0.95415 1.02702 0.98233 1.21509 0.95958 0.93784 1.03816 1.20743 1.00119 0.93589 1.02415 1.21511 0.91055 0.83599 1.01660 1.86046 1.35569 1.11928 1.88861 1.18777 0.91723 0.84288 0.97471 1.21376 0.93683 0.98766 1.07284 1.20850 0.99929 0.91468 0.98183 1.21268 0.92278 0.99444 1.01577 1.19867 0.93522 0.93268 1.01814 1.18155 0.87938 0.82936 0.78313 1.90769 1.14543 1.85708 1.49060 1.42868 1.09714 1.04596 1.71224 1.17256 0.94488 0.88160 1.09237 1.20316 0.99367 0.94356 0.99875 1.21188 0.93408 0.98181 1.03341 1.17744 0.91137 0.91644 0.89713 1.19509 1.20395 1.08664 1.00491 0.90569 1.25887 0.95829 0.97493 0.95368 1.69762 1.32165 1.36240 1.05650 0.86189 0.80964 0.80651 0.78131 1.19524 1.20301 1.18711 1.20807 0.99245 0.93891 1.08550 1.20416 0.93457 0.97891 0.98624 1.20479 1.00876 0.88763 1.01256 0.87010 0.88186 0.91230 0.91210 0.91759 0.90977 0.90993 0.85285 0.85141 0.85280 0.76969 0.89027 0.84991 0.91125 0.88518 0.87379 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 13.66 29.02 0.40 -0.98 16 2 C -0.15 -1.13 6.05 -101.06 -0.61 -1.75 16 3 C -0.11 -0.56 10.03 36.01 0.36 -0.20 16 4 C 0.10 0.76 5.14 36.01 0.19 0.95 16 5 O -0.31 -3.49 8.53 -19.47 -0.17 -3.66 16 6 C 0.12 1.46 6.68 -39.27 -0.26 1.19 16 7 C -0.19 -1.83 9.03 -39.35 -0.36 -2.19 16 8 C -0.09 -0.80 10.03 -39.67 -0.40 -1.19 16 9 C -0.13 -1.42 9.54 -39.17 -0.37 -1.79 16 10 C -0.08 -1.19 5.87 -104.99 -0.62 -1.80 16 11 C 0.54 10.00 7.60 -12.35 -0.09 9.91 16 12 O -0.52 -11.75 13.76 5.31 0.07 -11.67 16 13 N -0.64 -11.59 5.25 -10.60 -0.06 -11.64 16 14 C 0.00 0.02 6.30 -83.60 -0.53 -0.51 16 15 C -0.12 -2.72 9.90 -39.78 -0.39 -3.11 16 16 C -0.14 -3.63 8.61 -39.26 -0.34 -3.97 16 17 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 18 C -0.46 -12.32 9.02 -37.86 -0.34 -12.66 16 19 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 20 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 21 N -0.81 -21.16 10.60 55.55 0.59 -20.57 16 22 Si 0.92 19.07 29.56 -169.99 -5.03 14.05 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 26 C -0.20 -5.24 9.74 -39.26 -0.38 -5.62 16 27 C -0.08 -2.04 8.61 -39.79 -0.34 -2.39 16 28 C -0.09 -1.34 9.53 -39.02 -0.37 -1.71 16 29 H 0.11 1.10 6.84 -52.48 -0.36 0.74 16 30 H 0.10 0.66 8.04 -52.49 -0.42 0.24 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.31 8.06 -51.93 -0.42 -0.11 16 33 H 0.06 0.26 8.12 -51.93 -0.42 -0.17 16 34 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 35 H 0.07 0.47 7.65 -51.93 -0.40 0.07 16 36 H 0.13 0.87 6.28 -52.49 -0.33 0.54 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.13 1.18 6.41 -52.49 -0.34 0.84 16 39 H 0.40 5.56 6.86 -40.82 -0.28 5.28 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.13 3.50 6.13 -52.48 -0.32 3.18 16 42 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 43 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 44 H 0.11 2.60 6.22 -52.48 -0.33 2.28 16 45 H 0.14 2.20 7.65 -52.48 -0.40 1.80 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -31.37 379.72 -9.66 -41.03 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.65 Total: 10.78 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -5.15 Total: -24.05 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.53 Total: -32.21 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.09 Total: -15.33 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.37 -9.66 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219778459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.973 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds