Wall clock time and date at job start Tue Mar 31 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53002 * 109.47079 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46846 * 295.00005 * 4 3 2 6 6 C 1.46505 * 119.99611 * 274.99869 * 5 4 3 7 7 C 1.50702 * 109.47072 * 85.00321 * 6 5 4 8 8 H 1.08005 * 119.99850 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99835 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00213 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00064 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46881 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47406 * 119.99724 * 11 9 7 14 14 H 1.48501 * 109.46874 * 240.00190 * 11 9 7 15 15 S 1.65600 * 120.00374 * 94.99955 * 5 4 3 16 16 O 1.42091 * 106.40189 * 203.54015 * 15 5 4 17 17 O 1.42104 * 106.39982 * 336.46194 * 15 5 4 18 18 N 1.65599 * 107.21674 * 89.99748 * 15 5 4 19 19 C 1.47428 * 125.64814 * 269.69678 * 18 15 5 20 20 C 1.55128 * 104.72254 * 155.81948 * 19 18 15 21 21 H 1.09002 * 111.22337 * 279.17598 * 20 19 18 22 22 O 1.42899 * 110.90858 * 155.27281 * 20 19 18 23 23 C 1.55161 * 101.48855 * 37.29096 * 20 19 18 24 24 C 1.53002 * 110.72035 * 205.97182 * 23 20 19 25 25 C 1.52997 * 110.71760 * 82.69751 * 23 20 19 26 26 C 1.47019 * 125.64840 * 90.00083 * 18 15 5 27 27 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 28 28 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 29 29 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47054 * 299.99711 * 3 2 1 31 31 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 32 32 H 1.08998 * 109.47000 * 54.99217 * 4 3 2 33 33 H 1.09000 * 109.47089 * 174.99826 * 4 3 2 34 34 H 1.09003 * 109.46864 * 205.00232 * 6 5 4 35 35 H 1.09000 * 109.47094 * 324.99990 * 6 5 4 36 36 H 0.97000 * 119.99851 * 179.97438 * 10 9 7 37 37 H 1.09003 * 110.36360 * 274.74251 * 19 18 15 38 38 H 1.08997 * 110.36552 * 37.06811 * 19 18 15 39 39 H 0.96701 * 113.99791 * 67.96876 * 22 20 19 40 40 H 1.08999 * 109.46935 * 174.97473 * 24 23 20 41 41 H 1.08993 * 109.46970 * 294.97516 * 24 23 20 42 42 H 1.08995 * 109.47010 * 54.97273 * 24 23 20 43 43 H 1.09003 * 109.47554 * 305.02427 * 25 23 20 44 44 H 1.09001 * 109.47442 * 65.02449 * 25 23 20 45 45 H 1.09002 * 109.46851 * 185.02615 * 25 23 20 46 46 H 1.08998 * 109.88351 * 300.43913 * 26 18 15 47 47 H 1.09002 * 109.88070 * 61.60574 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9766 0.5641 1.2509 6 6 4.1827 1.3884 2.4444 7 6 2.8708 1.5672 3.1641 8 1 1.9731 1.1126 2.7714 9 6 2.8164 2.3110 4.3237 10 7 3.9095 2.8640 4.8021 11 14 1.1901 2.5332 5.2154 12 1 0.1190 1.8166 4.4775 13 1 1.2995 1.9812 6.5896 14 1 0.8587 3.9790 5.2875 15 16 4.2424 -1.0691 1.3166 16 8 4.1065 -1.4432 2.6806 17 8 3.4689 -1.6438 0.2722 18 7 5.8293 -1.3239 0.9177 19 6 6.3462 -1.5585 -0.4429 20 6 7.8327 -1.1193 -0.3811 21 1 7.9284 -0.0371 -0.4702 22 8 8.6029 -1.7832 -1.3851 23 6 8.2378 -1.5984 1.0380 24 6 9.3953 -0.7592 1.5828 25 6 8.6038 -3.0838 1.0238 26 6 6.9552 -1.3599 1.8624 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 -0.8900 31 1 1.6885 1.8465 0.8900 32 1 3.8507 0.5685 -0.8426 33 1 3.9784 2.1767 -0.0902 34 1 4.8962 0.8974 3.1062 35 1 4.5715 2.3632 2.1500 36 1 3.8711 3.3876 5.6177 37 1 6.2709 -2.6150 -0.7004 38 1 5.8013 -0.9513 -1.1657 39 1 8.3850 -1.5162 -2.2886 40 1 9.6041 -1.0526 2.6116 41 1 10.2824 -0.9233 0.9710 42 1 9.1242 0.2961 1.5538 43 1 7.7780 -3.6576 0.6032 44 1 9.4962 -3.2324 0.4157 45 1 8.7981 -3.4199 2.0423 46 1 7.0258 -0.4094 2.3913 47 1 6.8157 -2.1733 2.5745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225712284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:09 Heat of formation + Delta-G solvation = -163.675132 kcal Electronic energy + Delta-G solvation = -30046.766433 eV Core-core repulsion = 25970.940502 eV Total energy + Delta-G solvation = -4075.825931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.59457 -37.57842 -36.41837 -35.71984 -35.33039 -34.96468 -33.24260 -32.51355 -29.34169 -28.42443 -27.35221 -26.77729 -25.73248 -25.64831 -22.68427 -22.41129 -21.61848 -19.21972 -18.47716 -17.53150 -17.14068 -16.90532 -16.42829 -15.99302 -15.45212 -15.00058 -14.94086 -14.73547 -14.41587 -14.32279 -14.01744 -13.95967 -13.27648 -13.15489 -12.64881 -12.60849 -12.60438 -12.40197 -12.17808 -11.98894 -11.92869 -11.64584 -11.59107 -11.43015 -11.23675 -11.15092 -11.06052 -11.03331 -10.76665 -10.68401 -10.58711 -10.44981 -10.36982 -10.09772 -9.98360 -9.64775 -9.02381 -8.78714 -8.43824 -8.06274 -6.06968 -4.09479 1.24588 3.28711 3.37247 3.41326 3.52423 4.02252 4.22404 4.32563 4.36250 4.43768 4.57453 4.82977 5.10083 5.12373 5.21950 5.27677 5.30123 5.42719 5.56679 5.58543 5.63674 5.66633 5.71430 5.75309 5.77430 5.85498 5.88290 5.92633 5.97115 6.02242 6.07906 6.10711 6.15822 6.26806 6.36039 6.40016 6.56588 6.67998 7.21428 7.40951 7.47465 7.60505 7.76669 7.91914 8.21673 8.93666 9.55236 11.01824 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.004745 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.962545 B = 5899.137942 C = 7153.703864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.033 3.967 4 C 0.143 3.857 5 N -0.988 5.988 6 C 0.257 3.743 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.062 3.938 10 N -0.896 5.896 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.284 1.284 15 S 2.790 3.210 16 O -0.962 6.962 17 O -0.967 6.967 18 N -1.022 6.022 19 C 0.097 3.903 20 C 0.099 3.901 21 H 0.075 0.925 22 O -0.554 6.554 23 C -0.065 4.065 24 C -0.137 4.137 25 C -0.128 4.128 26 C 0.128 3.872 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.378 0.622 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 -4.784 -12.689 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.045 4.045 4 C 0.016 3.984 5 N -0.829 5.829 6 C 0.135 3.865 7 C -0.561 4.561 8 H 0.082 0.918 9 C -0.140 4.140 10 N -0.536 5.536 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.211 1.211 15 S 2.799 3.201 16 O -0.945 6.945 17 O -0.951 6.951 18 N -0.861 5.861 19 C -0.030 4.030 20 C 0.039 3.961 21 H 0.093 0.907 22 O -0.358 6.358 23 C -0.067 4.067 24 C -0.195 4.195 25 C -0.185 4.185 26 C 0.002 3.998 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.522 -5.788 -11.750 15.105 hybrid contribution -1.228 1.151 0.075 1.685 sum 6.295 -4.637 -11.675 14.051 Atomic orbital electron populations 1.22653 0.82520 1.02004 0.99257 1.88087 1.18330 1.27087 1.95242 1.23186 0.94925 0.85574 1.00838 1.21016 0.92574 0.99163 0.85640 1.57827 1.80157 1.27193 1.17741 1.19057 0.97256 0.90354 0.79843 1.21567 0.94904 1.31436 1.08235 0.91841 1.24920 0.96591 0.95590 0.96901 1.69922 1.27158 1.34339 1.22137 0.86522 0.83929 0.77528 0.79953 1.19740 1.20796 1.21062 1.01884 0.71448 0.73403 0.73326 1.93608 1.84535 1.81926 1.34481 1.93590 1.66226 1.76543 1.58711 1.59468 1.25307 1.87711 1.13581 1.22559 0.94766 1.01467 0.84220 1.23132 0.89011 0.95639 0.88352 0.90670 1.86503 1.63002 1.68345 1.17992 1.21614 0.94968 0.97288 0.92797 1.21796 0.97071 0.99408 1.01189 1.21634 1.02011 0.93401 1.01441 1.21840 0.84018 1.02452 0.91500 0.94319 0.94963 0.90320 0.94000 0.90531 0.91430 0.89619 0.94590 0.94896 0.92819 0.90923 0.90994 0.77538 0.91923 0.92013 0.92093 0.92478 0.91738 0.92627 0.90873 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.37 -7.34 8.76 -54.45 -0.48 -7.82 16 3 C 0.03 0.59 6.02 37.16 0.22 0.82 16 4 C 0.14 2.45 5.84 -4.04 -0.02 2.43 16 5 N -0.99 -20.41 2.80 -115.65 -0.32 -20.73 16 6 C 0.26 6.27 5.12 -5.19 -0.03 6.24 16 7 C -0.52 -14.29 8.39 -34.44 -0.29 -14.58 16 8 H 0.06 1.77 6.77 -52.48 -0.36 1.41 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 11 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 S 2.79 58.18 6.22 -107.50 -0.67 57.51 16 16 O -0.96 -24.07 16.69 -57.17 -0.95 -25.02 16 17 O -0.97 -21.08 14.87 -65.29 -0.97 -22.05 16 18 N -1.02 -16.56 3.75 -111.29 -0.42 -16.97 16 19 C 0.10 1.23 6.40 -2.41 -0.02 1.22 16 20 C 0.10 1.07 3.67 -24.46 -0.09 0.98 16 21 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 22 O -0.55 -5.21 12.32 -35.23 -0.43 -5.64 16 23 C -0.07 -0.77 0.86 -152.67 -0.13 -0.90 16 24 C -0.14 -1.41 8.49 37.16 0.32 -1.10 16 25 C -0.13 -1.43 7.91 37.16 0.29 -1.13 16 26 C 0.13 1.89 6.16 -3.07 -0.02 1.87 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.53 6.25 -51.93 -0.32 1.21 16 32 H 0.07 1.02 7.61 -51.93 -0.40 0.63 16 33 H 0.09 1.27 8.00 -51.93 -0.42 0.86 16 34 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 35 H 0.03 0.80 8.00 -51.93 -0.42 0.39 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.07 0.92 7.69 -51.93 -0.40 0.52 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.38 1.97 9.12 45.56 0.42 2.39 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.06 0.68 7.42 -51.93 -0.39 0.29 16 44 H 0.06 0.69 7.73 -51.93 -0.40 0.29 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 1.12 7.82 -51.93 -0.41 0.71 16 47 H 0.07 1.11 7.84 -51.93 -0.41 0.70 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -34.99 386.37 -8.70 -43.69 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.24 Total: 0.41 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 1.25 Total: -0.88 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.01 Total: -62.67 kcal Atomic # 8 Polarization: -57.69 SS G_CDS: -2.84 Total: -60.53 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 58.18 SS G_CDS: -0.67 Total: 57.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.99 -8.70 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225712284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.988 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds