Wall clock time and date at job start Tue Mar 31 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86801 * 119.99892 * 2 1 4 4 H 1.48500 * 109.47047 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47331 * 119.99777 * 3 2 1 6 6 H 1.48503 * 109.47039 * 239.99691 * 3 2 1 7 7 C 1.39965 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99795 * 154.81253 * 7 2 1 9 9 C 1.41048 * 119.99725 * 334.81617 * 7 2 1 10 10 C 1.40735 * 120.30709 * 334.82329 * 9 7 2 11 11 C 1.36462 * 119.94815 * 179.97438 * 10 9 7 12 12 C 1.38880 * 120.58041 * 0.02562 * 11 10 9 13 13 C 1.38199 * 120.62476 * 359.97218 * 12 11 10 14 14 C 1.38687 * 120.02821 * 359.74827 * 13 12 11 15 15 N 1.39009 * 120.28948 * 180.25633 * 14 13 12 16 16 C 1.34783 * 119.99874 * 325.33157 * 15 14 13 17 17 O 1.21588 * 119.99455 * 4.38868 * 16 15 14 18 18 C 1.47593 * 120.00140 * 184.38016 * 16 15 14 19 19 C 1.39737 * 120.12187 * 0.02562 * 18 16 15 20 20 C 1.37971 * 119.85902 * 179.97438 * 19 18 16 21 21 F 1.35104 * 119.94115 * 179.97438 * 20 19 18 22 22 C 1.38914 * 120.11230 * 359.97438 * 20 19 18 23 23 F 1.35106 * 119.87182 * 180.02562 * 22 20 19 24 24 C 1.38506 * 120.25112 * 0.02562 * 22 20 19 25 25 C 1.38045 * 120.13763 * 359.72531 * 24 22 20 26 26 Cl 1.73595 * 120.05948 * 180.27302 * 25 24 22 27 27 H 0.96994 * 119.99593 * 174.62842 * 1 2 3 28 28 H 1.07998 * 120.02598 * 359.95336 * 10 9 7 29 29 H 1.08001 * 119.70886 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.68372 * 179.97438 * 12 11 10 31 31 H 1.07994 * 119.99000 * 180.02562 * 13 12 11 32 32 H 0.96996 * 120.00322 * 145.33792 * 15 14 13 33 33 H 1.07997 * 120.07145 * 0.02562 * 19 18 16 34 34 H 1.08004 * 119.92765 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 1.2775 2.7465 -0.0006 5 1 3.0962 1.6965 1.2125 6 1 3.0963 1.6964 -1.2125 7 6 2.0084 -1.2121 0.0005 8 1 3.0113 -1.2567 -0.3975 9 6 1.4037 -2.3753 0.5209 10 6 0.3827 -2.2748 1.4842 11 6 -0.1977 -3.4050 1.9823 12 6 0.2103 -4.6592 1.5474 13 6 1.2107 -4.7857 0.6023 14 6 1.8140 -3.6539 0.0747 15 7 2.8171 -3.7746 -0.8801 16 6 3.6807 -4.8078 -0.8233 17 8 3.5344 -5.6769 0.0143 18 6 4.8038 -4.8843 -1.7779 19 6 4.9744 -3.8866 -2.7413 20 6 6.0264 -3.9633 -3.6306 21 9 6.1927 -2.9998 -4.5631 22 6 6.9150 -5.0293 -3.5689 23 9 7.9438 -5.0992 -4.4419 24 6 6.7502 -6.0207 -2.6159 25 6 5.7042 -5.9517 -1.7176 26 17 5.5037 -7.1917 -0.5194 27 1 -0.4849 -0.8363 -0.0786 28 1 0.0589 -1.3040 1.8293 29 1 -0.9806 -3.3233 2.7218 30 1 -0.2587 -5.5441 1.9517 31 1 1.5196 -5.7660 0.2712 32 1 2.8956 -3.1153 -1.5872 33 1 4.2848 -3.0569 -2.7891 34 1 7.4439 -6.8474 -2.5728 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225795805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:11 Heat of formation + Delta-G solvation = -77.793788 kcal Electronic energy + Delta-G solvation = -25602.351660 eV Core-core repulsion = 21355.042670 eV Total energy + Delta-G solvation = -4247.308990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.83316 -48.89481 -40.34642 -38.70744 -37.26806 -36.52632 -34.15001 -33.95190 -31.65966 -30.61775 -29.43605 -28.48831 -25.28994 -24.44104 -23.50515 -21.79789 -21.07309 -19.91086 -18.71685 -18.10001 -17.75870 -17.58947 -16.69937 -16.65652 -16.02300 -15.29786 -15.07705 -14.93088 -14.78174 -14.73043 -14.31806 -14.18705 -13.73620 -13.59382 -13.17100 -12.88986 -12.76231 -12.32755 -12.14338 -11.91521 -11.55772 -11.34182 -11.27236 -11.09928 -10.73510 -10.49512 -10.31945 -9.78679 -9.52773 -9.43016 -9.12823 -8.94336 -8.93855 -7.70212 -7.47585 -7.06008 -4.57136 0.12480 0.45021 1.83680 2.33316 2.69052 2.78098 3.07603 3.18313 3.27707 3.29314 3.46083 3.63006 3.86801 3.90408 4.07965 4.42127 4.47847 4.70085 4.94910 5.22388 5.23201 5.30770 5.38461 5.59131 6.13164 6.15058 6.25064 6.40622 6.71037 6.85899 7.03748 7.28711 7.41053 7.61725 7.66634 7.82732 7.92097 8.11449 8.20171 8.53067 8.65710 8.79642 9.91609 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004248 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.561027 B = 6589.153577 C = 8750.663988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.042 3.958 3 Si 1.062 2.938 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.094 3.906 10 C -0.207 4.207 11 C -0.089 4.089 12 C -0.240 4.240 13 C -0.067 4.067 14 C 0.000 4.000 15 N -0.623 5.623 16 C 0.533 3.467 17 O -0.508 6.508 18 C -0.095 4.095 19 C -0.085 4.085 20 C 0.069 3.931 21 F -0.120 7.120 22 C 0.098 3.902 23 F -0.119 7.119 24 C -0.129 4.129 25 C 0.025 3.975 26 Cl -0.006 7.006 27 H 0.301 0.699 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.400 0.600 33 H 0.162 0.838 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.709 -6.691 -6.939 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.181 4.181 3 Si 0.885 3.115 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.092 0.908 9 C 0.089 3.911 10 C -0.227 4.227 11 C -0.108 4.108 12 C -0.260 4.260 13 C -0.087 4.087 14 C -0.093 4.093 15 N -0.265 5.265 16 C 0.319 3.681 17 O -0.385 6.385 18 C -0.100 4.100 19 C -0.105 4.105 20 C 0.049 3.951 21 F -0.098 7.098 22 C 0.077 3.923 23 F -0.098 7.098 24 C -0.149 4.149 25 C -0.004 4.004 26 Cl 0.024 6.976 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.237 0.763 33 H 0.179 0.821 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 10.378 -5.724 -6.260 13.404 hybrid contribution 0.512 -1.209 -0.653 1.467 sum 10.890 -6.933 -6.913 14.644 Atomic orbital electron populations 1.70472 1.08193 1.34468 1.28204 1.26972 0.95628 1.04197 0.91337 0.83672 0.75745 0.73989 0.78086 1.19750 1.19945 1.20080 1.20338 1.02721 0.94146 1.38054 0.90777 1.17466 0.92278 0.90826 0.90480 1.20759 1.02968 0.97458 1.01529 1.20425 0.98503 0.93162 0.98690 1.20267 1.03951 0.95941 1.05870 1.20706 0.94389 0.96819 0.96814 1.17521 0.97860 0.94136 0.99802 1.42696 1.28751 1.26124 1.28949 1.17785 0.81928 0.83875 0.84464 1.90846 1.73249 1.37816 1.36550 1.19895 0.97767 0.94570 0.97746 1.21318 0.96816 0.99464 0.92858 1.17464 0.97476 0.88234 0.91969 1.91582 1.95049 1.60648 1.62548 1.17573 0.87361 0.95706 0.91692 1.91571 1.55495 1.96043 1.66643 1.20859 0.99478 0.99982 0.94544 1.20710 0.94636 0.91974 0.93055 1.98450 1.96539 1.49547 1.53086 0.88511 0.87299 0.89112 0.88917 0.86934 0.76309 0.82070 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.51 12.32 55.55 0.68 -18.83 16 2 C 0.04 0.97 4.95 -17.32 -0.09 0.88 16 3 Si 1.06 20.07 30.00 -169.99 -5.10 14.97 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.28 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.52 -12.50 8.35 -37.87 -0.32 -12.81 16 8 H 0.07 1.67 7.39 -52.49 -0.39 1.28 16 9 C 0.09 2.29 5.32 -106.65 -0.57 1.72 16 10 C -0.21 -5.03 7.87 -39.28 -0.31 -5.34 16 11 C -0.09 -2.00 9.97 -39.98 -0.40 -2.40 16 12 C -0.24 -5.32 10.04 -39.36 -0.39 -5.72 16 13 C -0.07 -1.53 8.69 -39.43 -0.34 -1.87 16 14 C 0.00 0.01 6.33 -83.20 -0.53 -0.52 16 15 N -0.62 -11.90 4.84 -10.40 -0.05 -11.95 16 16 C 0.53 9.57 7.60 -12.44 -0.09 9.47 16 17 O -0.51 -10.32 11.37 5.29 0.06 -10.26 16 18 C -0.10 -1.34 5.88 -104.95 -0.62 -1.96 16 19 C -0.08 -1.02 9.51 -39.12 -0.37 -1.39 16 20 C 0.07 0.80 7.30 -39.43 -0.29 0.51 16 21 F -0.12 -1.46 17.17 2.25 0.04 -1.42 16 22 C 0.10 1.06 7.31 -39.23 -0.29 0.77 16 23 F -0.12 -1.30 17.17 2.25 0.04 -1.26 16 24 C -0.13 -1.31 9.79 -39.55 -0.39 -1.70 16 25 C 0.02 0.32 6.35 -39.08 -0.25 0.07 16 26 Cl -0.01 -0.08 26.01 -51.86 -1.35 -1.43 16 27 H 0.30 7.63 6.62 -40.82 -0.27 7.36 16 28 H 0.11 2.71 6.45 -52.49 -0.34 2.37 16 29 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.11 2.51 6.19 -52.49 -0.33 2.18 16 32 H 0.40 6.78 5.99 -40.82 -0.24 6.54 16 33 H 0.16 1.76 6.41 -52.49 -0.34 1.42 16 34 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -26.82 318.68 -8.08 -34.90 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -1.97 Total: 10.77 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -5.23 Total: -20.29 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.63 Total: -30.78 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.10 Total: 14.97 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.35 Total: -1.43 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.82 -8.08 -34.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225795805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.897 kcal (2) G-P(sol) polarization free energy of solvation -26.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds