Wall clock time and date at job start Tue Mar 31 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32307 * 125.89361 * 2 1 4 4 C 1.33216 * 109.82155 * 180.02562 * 3 2 1 5 5 C 1.40636 * 131.81305 * 179.97438 * 4 3 2 6 6 C 1.36303 * 119.38917 * 179.97438 * 5 4 3 7 7 C 1.40173 * 119.60518 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.93729 * 179.97438 * 7 6 5 9 9 C 1.35270 * 120.12290 * 0.02562 * 7 6 5 10 10 N 1.35954 * 120.63853 * 359.95554 * 9 7 6 11 11 C 1.38305 * 132.39263 * 180.02562 * 10 9 7 12 12 C 1.41741 * 126.79222 * 0.28110 * 11 10 9 13 13 O 1.21788 * 119.99977 * 96.33219 * 12 11 10 14 14 N 1.34769 * 119.99946 * 276.33891 * 12 11 10 15 15 C 1.39078 * 120.00280 * 185.31637 * 14 12 11 16 16 C 1.39527 * 119.83960 * 212.88743 * 15 14 12 17 17 C 1.36356 * 120.16098 * 179.75705 * 16 15 14 18 18 C 1.40880 * 119.83434 * 0.53390 * 17 16 15 19 19 C 1.41132 * 120.15652 * 179.69484 * 18 17 16 20 20 H 1.08006 * 119.99782 * 205.69929 * 19 18 17 21 21 C 1.39888 * 120.00335 * 25.70186 * 19 18 17 22 22 N 1.30888 * 119.99705 * 14.10209 * 21 19 18 23 23 Si 1.86801 * 120.00141 * 194.09781 * 21 19 18 24 24 H 1.48498 * 109.47061 * 60.00135 * 23 21 19 25 25 H 1.48505 * 109.46917 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46986 * 299.99997 * 23 21 19 27 27 C 1.40877 * 119.67943 * 359.71952 * 18 17 16 28 28 C 1.36351 * 119.83464 * 359.97438 * 27 18 17 29 29 H 1.08996 * 109.46976 * 269.95653 * 1 2 3 30 30 H 1.09004 * 109.46901 * 29.96149 * 1 2 3 31 31 H 1.08998 * 109.47014 * 149.95863 * 1 2 3 32 32 H 1.08005 * 120.31075 * 0.02692 * 5 4 3 33 33 H 1.07990 * 120.19659 * 179.97438 * 6 5 4 34 34 H 1.09008 * 109.46785 * 89.99958 * 8 7 6 35 35 H 1.08997 * 109.47515 * 210.00133 * 8 7 6 36 36 H 1.09002 * 109.46952 * 330.00786 * 8 7 6 37 37 H 1.08000 * 119.67770 * 179.97438 * 9 7 6 38 38 H 0.96999 * 120.00211 * 5.31343 * 14 12 11 39 39 H 1.07994 * 119.91766 * 359.97438 * 16 15 14 40 40 H 1.08008 * 120.07862 * 180.23057 * 17 16 15 41 41 H 0.97001 * 119.99533 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.08543 * 179.97438 * 27 18 17 43 43 H 1.08001 * 119.91940 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2827 1.0718 0.0000 4 6 3.5628 0.7030 -0.0006 5 6 4.7540 1.4507 -0.0013 6 6 5.9519 0.8004 -0.0012 7 6 5.9790 -0.6011 -0.0010 8 6 7.2993 -1.3277 -0.0015 9 6 4.8224 -1.3025 -0.0014 10 7 3.6234 -0.6615 -0.0010 11 6 2.3195 -1.1227 -0.0008 12 6 1.8977 -2.4758 0.0046 13 8 1.6039 -3.0178 1.0550 14 7 1.8218 -3.1627 -1.1524 15 6 1.3037 -4.4533 -1.1623 16 6 1.7994 -5.3935 -2.0662 17 6 1.2996 -6.6621 -2.0782 18 6 0.2724 -7.0193 -1.1827 19 6 -0.2544 -8.3286 -1.1937 20 1 -1.2615 -8.5084 -0.8474 21 6 0.5279 -9.3934 -1.6530 22 7 1.8179 -9.2376 -1.8104 23 14 -0.2686 -11.0379 -2.0417 24 1 -1.2869 -10.8552 -3.1070 25 1 0.7691 -11.9925 -2.5080 26 1 -0.9210 -11.5730 -0.8197 27 6 -0.2268 -6.0630 -0.2766 28 6 0.2870 -4.8000 -0.2717 29 1 -0.3633 -0.0008 1.0276 30 1 -0.3633 0.8904 -0.5133 31 1 -0.3633 -0.8896 -0.5145 32 1 4.7200 2.5302 -0.0010 33 1 6.8745 1.3615 -0.0022 34 1 7.6180 -1.5027 1.0261 35 1 7.1883 -2.2827 -0.5151 36 1 8.0465 -0.7232 -0.5157 37 1 4.8517 -2.3821 -0.0016 38 1 2.1286 -2.7570 -1.9783 39 1 2.5833 -5.1168 -2.7555 40 1 1.6869 -7.3900 -2.7760 41 1 2.3602 -9.9759 -2.1293 42 1 -1.0145 -6.3296 0.4125 43 1 -0.0949 -4.0657 0.4220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226096302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:21 Heat of formation + Delta-G solvation = 71.390073 kcal Electronic energy + Delta-G solvation = -27398.571368 eV Core-core repulsion = 23602.522260 eV Total energy + Delta-G solvation = -3796.049109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.01635 -39.65526 -38.11233 -37.21999 -34.52595 -34.04361 -33.09314 -32.78339 -30.49139 -29.64676 -29.21557 -28.19203 -26.27704 -25.36583 -23.95606 -22.47175 -21.87791 -21.23219 -20.54820 -19.73993 -18.16631 -17.39827 -17.05168 -16.72539 -16.56917 -15.84409 -15.25582 -15.18042 -15.03766 -14.25202 -14.06816 -13.90781 -13.90628 -13.33519 -13.13781 -13.02580 -12.75647 -12.71296 -12.66674 -12.19515 -12.15390 -11.94269 -11.86303 -11.41431 -11.33784 -11.17846 -11.10559 -11.07806 -10.80611 -10.39880 -10.10991 -9.65167 -9.54948 -9.23450 -8.99983 -8.73241 -7.96230 -7.60833 -7.03468 -6.78254 -4.36620 0.49570 0.87662 1.99991 2.48553 2.54563 2.97226 3.02897 3.05060 3.06809 3.27648 3.32497 3.76921 3.88975 3.96001 4.19222 4.42607 4.54598 4.58343 4.74263 4.93685 5.09339 5.18764 5.22389 5.25088 5.53719 5.57137 5.63905 5.64867 5.70910 5.79514 5.91081 5.93344 6.12818 6.25076 6.36004 6.44606 6.68157 6.81315 6.86748 6.98260 7.11645 7.21761 7.53641 7.63222 7.67803 7.79519 7.97276 8.18599 8.22012 8.51934 8.62187 8.82887 8.92670 10.13166 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002666 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.486705 B =10499.697885 C =11697.411088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.123 3.877 3 N -0.492 5.492 4 C 0.228 3.772 5 C -0.080 4.080 6 C -0.094 4.094 7 C -0.107 4.107 8 C -0.105 4.105 9 C 0.057 3.943 10 N -0.328 5.328 11 C -0.122 4.122 12 C 0.579 3.421 13 O -0.514 6.514 14 N -0.633 5.633 15 C -0.014 4.014 16 C -0.112 4.112 17 C -0.152 4.152 18 C 0.106 3.894 19 C -0.454 4.454 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.795 5.795 23 Si 0.912 3.088 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.265 1.265 27 C -0.214 4.214 28 C -0.074 4.074 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.163 0.837 38 H 0.395 0.605 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.281 0.719 42 H 0.096 0.904 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.277 16.055 -0.769 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.015 4.015 3 N -0.212 5.212 4 C -0.013 4.013 5 C -0.100 4.100 6 C -0.118 4.118 7 C -0.110 4.110 8 C -0.162 4.162 9 C -0.067 4.067 10 N 0.002 4.998 11 C -0.237 4.237 12 C 0.363 3.637 13 O -0.388 6.388 14 N -0.276 5.276 15 C -0.106 4.106 16 C -0.132 4.132 17 C -0.171 4.171 18 C 0.103 3.897 19 C -0.484 4.484 20 H 0.097 0.903 21 C -0.145 4.145 22 N -0.420 5.420 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.189 1.189 27 C -0.235 4.235 28 C -0.094 4.094 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.181 0.819 38 H 0.229 0.771 39 H 0.108 0.892 40 H 0.143 0.857 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.958 16.261 -0.067 18.565 hybrid contribution 0.343 -1.417 -0.500 1.541 sum 9.301 14.844 -0.567 17.526 Atomic orbital electron populations 1.20271 0.86054 1.03640 1.03607 1.21337 0.96594 0.86001 0.97586 1.70343 0.97957 1.29126 1.23778 1.20921 0.94537 0.80156 1.05653 1.20281 0.87759 1.00558 1.01375 1.21014 0.98177 0.93306 0.99309 1.19519 0.94728 0.94102 1.02642 1.20702 0.92114 1.00264 1.03154 1.21562 0.82376 0.99424 1.03336 1.42503 1.05114 1.08707 1.43523 1.20053 0.82138 0.96349 1.25186 1.15512 0.80283 0.83343 0.84530 1.90879 1.48609 1.68446 1.30900 1.43075 1.60696 1.14812 1.08972 1.17168 1.02518 0.83834 1.07063 1.20210 0.99750 0.93707 0.99512 1.20963 1.01012 0.94002 1.01169 1.17683 0.90755 0.92587 0.88639 1.19560 1.00505 0.91539 1.36753 0.90333 1.25942 0.94433 1.01263 0.92854 1.69822 1.05331 1.33636 1.33255 0.86305 0.79731 0.80405 0.79935 1.18796 1.20323 1.18949 1.20666 1.05819 0.94303 1.02663 1.20261 0.94700 0.96692 0.97743 0.89917 0.90049 0.90341 0.82851 0.83757 0.90458 0.90847 0.90586 0.81919 0.77096 0.89241 0.85719 0.90786 0.88555 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.23 36.01 0.37 -0.63 16 2 C 0.12 1.93 7.16 -82.26 -0.59 1.34 16 3 N -0.49 -7.61 11.25 -8.50 -0.10 -7.71 16 4 C 0.23 3.18 7.77 -156.05 -1.21 1.97 16 5 C -0.08 -0.79 10.10 -39.37 -0.40 -1.19 16 6 C -0.09 -0.75 9.74 -39.55 -0.39 -1.13 16 7 C -0.11 -0.97 5.85 -104.95 -0.61 -1.58 16 8 C -0.11 -0.65 10.00 36.01 0.36 -0.29 16 9 C 0.06 0.69 10.44 -16.78 -0.18 0.51 16 10 N -0.33 -4.79 2.96 -60.14 -0.18 -4.96 16 11 C -0.12 -2.03 6.52 -83.48 -0.54 -2.57 16 12 C 0.58 10.95 6.64 -14.93 -0.10 10.85 16 13 O -0.51 -11.71 14.72 5.11 0.08 -11.64 16 14 N -0.63 -11.56 5.29 -12.31 -0.07 -11.63 16 15 C -0.01 -0.30 6.29 -83.61 -0.53 -0.83 16 16 C -0.11 -2.51 9.89 -39.78 -0.39 -2.90 16 17 C -0.15 -3.82 8.63 -39.26 -0.34 -4.16 16 18 C 0.11 2.80 5.58 -106.80 -0.60 2.20 16 19 C -0.45 -11.85 9.05 -37.87 -0.34 -12.19 16 20 H 0.08 1.96 7.88 -52.48 -0.41 1.55 16 21 C 0.07 1.78 5.21 -17.34 -0.09 1.69 16 22 N -0.79 -20.11 10.81 55.54 0.60 -19.51 16 23 Si 0.91 18.32 29.58 -169.99 -5.03 13.29 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 27 C -0.21 -5.37 9.74 -39.26 -0.38 -5.75 16 28 C -0.07 -1.76 8.57 -39.78 -0.34 -2.10 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.02 7.94 -51.93 -0.41 0.60 16 32 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 35 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 36 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 37 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.40 6.06 8.77 -40.82 -0.36 5.70 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.13 3.22 6.10 -52.48 -0.32 2.90 16 41 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 42 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.10 2.40 6.37 -52.49 -0.33 2.07 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -31.85 369.57 -10.61 -42.47 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.19 Total: 10.89 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -6.30 Total: -16.78 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.26 Total: -43.80 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.85 -10.61 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226096302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.858 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds