Wall clock time and date at job start Tue Mar 31 2020 05:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46496 * 109.47118 * 2 1 4 4 C 1.46503 * 119.99735 * 276.33095 * 3 2 1 5 5 C 1.53001 * 109.46918 * 270.00183 * 4 3 2 6 6 F 1.39889 * 109.47568 * 59.99903 * 5 4 3 7 7 F 1.39898 * 109.47090 * 180.02562 * 5 4 3 8 8 F 1.39903 * 109.47026 * 299.99306 * 5 4 3 9 9 C 1.34773 * 120.00449 * 96.32816 * 3 2 1 10 10 O 1.21281 * 120.00396 * 186.26463 * 9 3 2 11 11 C 1.50702 * 120.00112 * 6.26672 * 9 3 2 12 12 H 1.09003 * 109.52986 * 47.19593 * 11 9 3 13 13 C 1.53113 * 109.50236 * 287.10280 * 11 9 3 14 14 C 1.53117 * 109.21309 * 182.43779 * 13 11 9 15 15 C 1.53035 * 109.28329 * 57.61499 * 14 13 11 16 16 N 1.46849 * 109.52150 * 300.82544 * 15 14 13 17 17 C 1.46902 * 110.99720 * 185.83634 * 16 15 14 18 18 H 1.09003 * 109.47089 * 178.95113 * 17 16 15 19 19 C 1.53006 * 109.47141 * 58.95490 * 17 16 15 20 20 C 1.50702 * 109.47433 * 298.95209 * 17 16 15 21 21 H 1.07999 * 119.99694 * 358.04848 * 20 17 16 22 22 C 1.37874 * 120.00084 * 178.04270 * 20 17 16 23 23 N 1.31510 * 120.00223 * 6.38956 * 22 20 17 24 24 Si 1.86796 * 119.99852 * 186.39096 * 22 20 17 25 25 H 1.48501 * 109.47184 * 85.00136 * 24 22 20 26 26 H 1.48496 * 109.47208 * 204.99813 * 24 22 20 27 27 H 1.48507 * 109.47269 * 325.00006 * 24 22 20 28 28 C 1.46847 * 111.19803 * 61.74211 * 16 15 14 29 29 H 1.08997 * 109.46938 * 187.19655 * 1 2 3 30 30 H 1.09001 * 109.46850 * 307.20142 * 1 2 3 31 31 H 1.09001 * 109.46776 * 67.20151 * 1 2 3 32 32 H 1.08992 * 109.47379 * 239.99553 * 2 1 3 33 33 H 1.09002 * 109.46732 * 119.99371 * 2 1 3 34 34 H 1.08999 * 109.47089 * 29.99899 * 4 3 2 35 35 H 1.09000 * 109.47493 * 150.00066 * 4 3 2 36 36 H 1.08996 * 109.53066 * 62.49403 * 13 11 9 37 37 H 1.09006 * 109.52116 * 302.36826 * 13 11 9 38 38 H 1.09002 * 109.50606 * 177.56089 * 14 13 11 39 39 H 1.09000 * 109.49984 * 297.63465 * 14 13 11 40 40 H 1.08996 * 109.46012 * 60.83730 * 15 14 13 41 41 H 1.09001 * 109.46405 * 180.80675 * 15 14 13 42 42 H 1.08999 * 109.46974 * 63.39789 * 19 17 16 43 43 H 1.09002 * 109.46913 * 183.39992 * 19 17 16 44 44 H 1.08992 * 109.46860 * 303.39580 * 19 17 16 45 45 H 0.96993 * 120.00476 * 179.97438 * 23 22 20 46 46 H 1.08997 * 109.46491 * 58.27593 * 28 16 15 47 47 H 1.09005 * 109.45929 * 178.24229 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1306 2.1184 -1.2610 5 6 3.5214 1.8970 -1.8591 6 9 3.7146 0.5323 -2.0980 7 9 3.6289 2.6015 -3.0630 8 9 4.4928 2.3557 -0.9628 9 6 2.3643 1.9737 1.1600 10 8 2.6597 3.1499 1.1757 11 6 2.3842 1.1748 2.4377 12 1 2.9089 0.2340 2.2711 13 6 0.9478 0.8870 2.8829 14 6 0.9749 0.1281 4.2126 15 6 1.7326 0.9570 5.2522 16 7 3.1013 1.2034 4.7806 17 6 3.9003 1.8774 5.8127 18 1 4.9146 2.0311 5.4442 19 6 3.9414 1.0106 7.0729 20 6 3.2773 3.2101 6.1398 21 1 2.3958 3.5388 5.6094 22 6 3.8327 4.0097 7.1161 23 7 4.9743 3.6699 7.6736 24 14 2.9636 5.5756 7.6470 25 1 1.9532 5.2529 8.6863 26 1 3.9572 6.5294 8.2020 27 1 2.2894 6.1893 6.4747 28 6 3.1015 1.9721 3.5294 29 1 -0.3633 -1.0196 0.1287 30 1 -0.3633 0.6214 0.8186 31 1 -0.3633 0.3982 -0.9474 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.3738 1.7611 -1.9594 35 1 1.9802 3.1818 -1.0750 36 1 0.4467 0.2812 2.1279 37 1 0.4109 1.8269 3.0109 38 1 -0.0457 -0.0414 4.5558 39 1 1.4762 -0.8299 4.0746 40 1 1.2224 1.9089 5.3996 41 1 1.7660 0.4131 6.1962 42 1 4.4463 0.0704 6.8508 43 1 4.4832 1.5373 7.8585 44 1 2.9242 0.8067 7.4069 45 1 5.3652 4.2325 8.3602 46 1 2.5850 2.9192 3.6849 47 1 4.1293 2.1653 3.2221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245289711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:16 Heat of formation + Delta-G solvation = -183.629095 kcal Electronic energy + Delta-G solvation = -31663.417492 eV Core-core repulsion = 27045.258695 eV Total energy + Delta-G solvation = -4618.158797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.20884 -47.77793 -47.63839 -40.51426 -38.02258 -36.36894 -34.45872 -32.25276 -31.45122 -30.69452 -29.09299 -28.28826 -25.17763 -24.33367 -23.82439 -23.60406 -22.36349 -20.74036 -19.32557 -18.95810 -18.67669 -18.50453 -17.60858 -17.05923 -16.43529 -16.09870 -15.56390 -14.76670 -14.72738 -14.62873 -14.52614 -14.20470 -14.13937 -13.92407 -13.85747 -13.83022 -13.78648 -13.33010 -13.24726 -12.89070 -12.80701 -12.69731 -12.44131 -12.21168 -12.18799 -11.74101 -11.45256 -11.37245 -11.00734 -10.99011 -10.72716 -10.52166 -10.40219 -10.30346 -10.01236 -9.86342 -9.63820 -9.38011 -9.18237 -9.13837 -8.32639 -7.13061 -5.96256 -4.06659 2.29016 2.52192 2.82140 3.30654 3.37490 3.41184 3.64256 3.80367 4.07655 4.39481 4.44648 4.59090 4.75510 4.84979 4.94252 5.04298 5.06347 5.11136 5.26094 5.31033 5.36335 5.43677 5.54207 5.58547 5.77654 5.87972 6.02972 6.06068 6.16892 6.19690 6.31705 6.46593 6.64013 6.80759 6.89071 6.96837 7.04449 7.07550 7.18581 7.60127 7.74190 7.97652 8.06832 8.17124 8.36027 8.45828 9.01479 9.60137 11.05018 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.003460 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.199837 B = 8090.460142 C = 8919.171997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.097 3.903 3 N -0.618 5.618 4 C 0.075 3.925 5 C 0.432 3.568 6 F -0.185 7.185 7 F -0.185 7.185 8 F -0.172 7.172 9 C 0.524 3.476 10 O -0.513 6.513 11 C -0.099 4.099 12 H 0.099 0.901 13 C -0.121 4.121 14 C -0.114 4.114 15 C 0.055 3.945 16 N -0.536 5.536 17 C 0.208 3.792 18 H 0.040 0.960 19 C -0.131 4.131 20 C -0.541 4.541 21 H 0.056 0.944 22 C 0.069 3.931 23 N -0.886 5.886 24 Si 0.885 3.115 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.276 1.276 28 C 0.085 3.915 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.016 0.984 43 H 0.081 0.919 44 H 0.028 0.972 45 H 0.261 0.739 46 H 0.049 0.951 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -9.887 -18.372 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.025 4.025 3 N -0.353 5.353 4 C -0.051 4.051 5 C 0.376 3.624 6 F -0.167 7.167 7 F -0.166 7.166 8 F -0.153 7.153 9 C 0.313 3.687 10 O -0.385 6.385 11 C -0.121 4.121 12 H 0.116 0.884 13 C -0.159 4.159 14 C -0.152 4.152 15 C -0.073 4.073 16 N -0.261 5.261 17 C 0.102 3.898 18 H 0.058 0.942 19 C -0.189 4.189 20 C -0.580 4.580 21 H 0.074 0.926 22 C -0.133 4.133 23 N -0.525 5.525 24 Si 0.713 3.287 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.044 4.044 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.100 0.900 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.968 -9.631 -18.278 22.522 hybrid contribution -0.532 1.686 0.245 1.785 sum -9.500 -7.945 -18.033 21.876 Atomic orbital electron populations 1.22425 0.95418 1.03083 1.02835 1.21835 0.94793 0.81389 1.04525 1.47981 1.67311 1.15030 1.05013 1.22486 0.91284 1.02886 0.88455 1.21379 0.90766 0.73874 0.76374 1.93156 1.96242 1.32743 1.94560 1.93180 1.96831 1.78979 1.47626 1.93266 1.66109 1.88537 1.67438 1.21198 0.74820 0.87921 0.84753 1.90740 1.45914 1.16004 1.85867 1.21410 0.99047 0.99904 0.91722 0.88352 1.21902 0.94202 1.01178 0.98586 1.21617 0.99662 0.99225 0.94688 1.21971 0.90045 0.98388 0.96937 1.62408 1.11444 1.47581 1.04627 1.19244 0.93090 0.90368 0.87088 0.94248 1.21806 0.99176 0.97108 1.00856 1.21681 1.12770 1.03390 1.20114 0.92620 1.24878 0.94544 0.97526 0.96350 1.69898 1.16959 1.38462 1.27149 0.86724 0.79570 0.83518 0.78919 1.20650 1.21246 1.20057 1.21580 0.99645 0.94548 0.88624 0.90919 0.90893 0.92429 0.90016 0.88582 0.86240 0.85377 0.90735 0.91917 0.92137 0.91604 0.94490 0.90885 0.96535 0.90013 0.95302 0.92926 0.93274 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 9.28 37.16 0.35 -0.74 16 2 C 0.10 0.73 5.45 -4.04 -0.02 0.71 16 3 N -0.62 -6.58 2.39 -173.69 -0.42 -7.00 16 4 C 0.08 0.69 5.50 -4.04 -0.02 0.67 16 5 C 0.43 4.76 3.29 37.16 0.12 4.88 16 6 F -0.19 -1.97 16.13 2.25 0.04 -1.94 16 7 F -0.18 -1.98 17.32 2.25 0.04 -1.94 16 8 F -0.17 -2.53 16.53 2.25 0.04 -2.49 16 9 C 0.52 7.76 6.46 -10.99 -0.07 7.69 16 10 O -0.51 -9.66 15.27 5.56 0.08 -9.58 16 11 C -0.10 -1.48 1.84 -91.69 -0.17 -1.65 16 12 H 0.10 1.34 6.98 -51.93 -0.36 0.98 16 13 C -0.12 -1.54 4.70 -26.61 -0.12 -1.67 16 14 C -0.11 -1.55 6.09 -26.65 -0.16 -1.72 16 15 C 0.06 1.02 4.80 -3.83 -0.02 1.00 16 16 N -0.54 -11.18 4.66 -228.07 -1.06 -12.24 16 17 C 0.21 5.21 2.36 -68.86 -0.16 5.04 16 18 H 0.04 1.11 8.11 -51.93 -0.42 0.68 16 19 C -0.13 -3.14 8.85 37.16 0.33 -2.81 16 20 C -0.54 -14.69 7.20 -34.44 -0.25 -14.94 16 21 H 0.06 1.54 5.85 -52.49 -0.31 1.23 16 22 C 0.07 1.92 5.21 -17.82 -0.09 1.83 16 23 N -0.89 -25.36 11.45 55.43 0.63 -24.72 16 24 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 28 C 0.09 1.71 3.78 -3.83 -0.01 1.69 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.54 5.92 -51.93 -0.31 0.23 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.51 7.15 -51.93 -0.37 0.14 16 33 H 0.10 0.74 5.42 -51.93 -0.28 0.46 16 34 H 0.12 0.65 8.07 -51.93 -0.42 0.23 16 35 H 0.13 1.28 7.35 -51.93 -0.38 0.90 16 36 H 0.07 0.71 3.46 -51.93 -0.18 0.53 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.77 6.76 -51.93 -0.35 0.41 16 41 H 0.07 1.38 5.91 -51.93 -0.31 1.07 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 2.15 6.08 -51.93 -0.32 1.84 16 44 H 0.03 0.64 6.08 -51.93 -0.32 0.33 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.05 1.13 6.60 -51.93 -0.34 0.79 16 47 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -31.26 364.40 -7.24 -38.51 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.76 Total: -0.70 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.31 Total: 0.00 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.84 Total: -43.96 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.11 Total: -6.37 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.26 -7.24 -38.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245289711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.123 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds