Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00073 * 2 1 4 4 C 1.53002 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46688 * 65.00606 * 4 3 2 6 6 C 1.46500 * 119.99879 * 274.99693 * 5 4 3 7 7 C 1.50706 * 109.46993 * 275.00584 * 6 5 4 8 8 H 1.08000 * 120.00168 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99624 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99337 * 179.97438 * 9 7 6 11 11 Si 1.86791 * 120.00191 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47255 * 90.00397 * 11 9 7 13 13 H 1.48504 * 109.47293 * 210.00172 * 11 9 7 14 14 H 1.48497 * 109.47363 * 330.00065 * 11 9 7 15 15 S 1.65603 * 120.00563 * 95.00214 * 5 4 3 16 16 O 1.42104 * 106.39652 * 336.45500 * 15 5 4 17 17 O 1.42096 * 106.40385 * 203.53566 * 15 5 4 18 18 N 1.65600 * 107.21909 * 89.99081 * 15 5 4 19 19 C 1.47024 * 125.64410 * 89.98311 * 18 15 5 20 20 C 1.54316 * 107.26977 * 178.97572 * 19 18 15 21 21 H 1.09007 * 110.72364 * 96.34806 * 20 19 18 22 22 O 1.42903 * 110.71980 * 219.43757 * 20 19 18 23 23 C 1.55157 * 102.94387 * 337.80076 * 20 19 18 24 24 C 1.52998 * 111.00250 * 153.57435 * 23 20 19 25 25 C 1.52991 * 111.00553 * 277.43286 * 23 20 19 26 26 C 1.47418 * 125.65123 * 270.01886 * 18 15 5 27 27 H 1.08994 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46612 * 299.99666 * 1 2 3 29 29 H 1.09002 * 109.47347 * 59.99231 * 1 2 3 30 30 H 1.09003 * 109.47038 * 60.00467 * 3 2 1 31 31 H 1.09006 * 109.47346 * 300.00488 * 3 2 1 32 32 H 1.08999 * 109.47343 * 305.00275 * 4 3 2 33 33 H 1.09001 * 109.47049 * 184.99820 * 4 3 2 34 34 H 1.09003 * 109.47332 * 35.00033 * 6 5 4 35 35 H 1.09003 * 109.47476 * 155.00394 * 6 5 4 36 36 H 0.97010 * 119.99566 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.88420 * 59.55210 * 19 18 15 38 38 H 1.09010 * 110.00825 * 298.46258 * 19 18 15 39 39 H 0.96700 * 114.00311 * 298.54931 * 22 20 19 40 40 H 1.09005 * 109.47157 * 60.00855 * 24 23 20 41 41 H 1.08997 * 109.47225 * 180.02562 * 24 23 20 42 42 H 1.08998 * 109.47590 * 300.00592 * 24 23 20 43 43 H 1.08994 * 109.47751 * 59.99990 * 25 23 20 44 44 H 1.09001 * 109.46758 * 180.02562 * 25 23 20 45 45 H 1.09001 * 109.47115 * 299.99552 * 25 23 20 46 46 H 1.08998 * 110.36742 * 322.93170 * 26 18 15 47 47 H 1.09004 * 110.36731 * 85.26061 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0003 -0.8949 -1.3784 7 6 5.2993 -1.4246 -0.8277 8 1 6.0333 -0.7423 -0.4250 9 6 5.5512 -2.7802 -0.8391 10 7 6.6851 -3.2423 -0.3591 11 14 4.2821 -3.9601 -1.5364 12 1 4.5307 -4.1536 -2.9876 13 1 4.3847 -5.2668 -0.8382 14 1 2.9220 -3.3983 -1.3377 15 16 4.4454 1.5131 -2.5264 16 8 3.8177 2.7743 -2.3401 17 8 4.2756 0.7258 -3.6971 18 7 6.0733 1.7732 -2.3696 19 6 7.1345 0.9284 -2.9368 20 6 8.4846 1.5716 -2.5563 21 1 8.8969 1.1029 -1.6627 22 8 9.4094 1.4857 -3.6424 23 6 8.0998 3.0488 -2.2785 24 6 9.0805 3.6959 -1.2986 25 6 8.0200 3.8489 -3.5801 26 6 6.6984 2.8898 -1.6377 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8900 32 1 3.8516 0.5681 0.8409 33 1 3.9786 2.1764 0.0889 34 1 3.1678 -1.3219 -0.8192 35 1 3.9117 -1.1708 -2.4292 36 1 6.8621 -4.1960 -0.3667 37 1 7.0358 0.8876 -4.0216 38 1 7.0727 -0.0774 -2.5211 39 1 9.6229 0.5804 -3.9066 40 1 10.0855 3.6700 -1.7200 41 1 8.7873 4.7306 -1.1211 42 1 9.0675 3.1482 -0.3564 43 1 7.2659 3.4081 -4.2320 44 1 7.7491 4.8807 -3.3562 45 1 8.9888 3.8281 -4.0792 46 1 6.1161 3.8019 -1.7678 47 1 6.7907 2.6452 -0.5795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252527801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = -164.887126 kcal Electronic energy + Delta-G solvation = -30130.670468 eV Core-core repulsion = 26054.791981 eV Total energy + Delta-G solvation = -4075.878487 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.41069 -37.85243 -36.75760 -35.48110 -35.45453 -35.30691 -33.07991 -32.52110 -29.81011 -28.21398 -27.26101 -27.18517 -25.83890 -25.73705 -22.64252 -22.14047 -21.54223 -19.12273 -18.47837 -17.44814 -17.17733 -16.95926 -16.63833 -16.07906 -15.76954 -15.56622 -15.00996 -14.69580 -14.50585 -14.29478 -13.99695 -13.69813 -13.39759 -13.03279 -12.65315 -12.54355 -12.50337 -12.31944 -12.27226 -12.08335 -11.99469 -11.91472 -11.82529 -11.64544 -11.50907 -11.37263 -11.20516 -10.96343 -10.92465 -10.74603 -10.59983 -10.34341 -10.17709 -10.13751 -9.84177 -9.56139 -9.39765 -8.61727 -8.60368 -8.08155 -6.14181 -4.12819 1.12381 3.29272 3.34875 3.40022 3.43464 4.00831 4.06514 4.28419 4.39645 4.43348 4.63823 4.96098 5.10864 5.20545 5.29439 5.31721 5.34129 5.42665 5.45894 5.53037 5.56085 5.59858 5.61031 5.70208 5.74256 5.81632 5.82880 5.98273 5.99828 6.05067 6.14595 6.20012 6.26528 6.30499 6.40752 6.47335 6.54406 6.71262 7.03591 7.25816 7.38911 7.49158 7.62232 7.76343 8.43737 8.88368 9.48287 10.97893 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.005676 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.012405 B = 4931.866855 C = 6550.293946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.043 3.957 4 C 0.135 3.865 5 N -0.979 5.979 6 C 0.214 3.786 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.077 3.923 10 N -0.897 5.897 11 Si 0.866 3.134 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.260 1.260 15 S 2.798 3.202 16 O -0.994 6.994 17 O -0.975 6.975 18 N -1.008 6.008 19 C 0.090 3.910 20 C 0.106 3.894 21 H 0.077 0.923 22 O -0.559 6.559 23 C -0.066 4.066 24 C -0.135 4.135 25 C -0.126 4.126 26 C 0.126 3.874 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.381 0.619 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 11.842 -0.194 11.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.036 4.036 4 C 0.008 3.992 5 N -0.819 5.819 6 C 0.090 3.910 7 C -0.576 4.576 8 H 0.098 0.902 9 C -0.126 4.126 10 N -0.535 5.535 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.184 1.184 15 S 2.808 3.192 16 O -0.979 6.979 17 O -0.960 6.960 18 N -0.847 5.847 19 C -0.036 4.036 20 C 0.045 3.955 21 H 0.095 0.905 22 O -0.364 6.364 23 C -0.068 4.068 24 C -0.193 4.193 25 C -0.183 4.183 26 C 0.000 4.000 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.228 0.772 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.148 12.449 -0.836 12.529 hybrid contribution -0.590 -1.440 0.060 1.558 sum -1.739 11.008 -0.776 11.172 Atomic orbital electron populations 1.22716 0.82230 1.02411 0.99351 1.88057 1.18591 1.27391 1.95215 1.23126 0.95332 0.85004 1.00094 1.21106 0.91242 0.97966 0.88871 1.57516 1.78455 1.18372 1.27533 1.19667 0.98929 0.74392 0.97968 1.21469 1.01838 0.93052 1.41207 0.90231 1.24809 0.95120 0.98087 0.94608 1.69893 1.23541 1.14047 1.46001 0.86982 0.83269 0.80789 0.79694 1.19957 1.21202 1.18391 1.01368 0.71697 0.72412 0.73677 1.93531 1.74076 1.43048 1.87224 1.93560 1.84942 1.70942 1.46524 1.58838 1.23304 1.35677 1.66921 1.22471 0.86522 0.95843 0.98780 1.22886 0.87948 0.95203 0.89430 0.90548 1.86439 1.64154 1.32809 1.53040 1.21747 0.94312 0.94135 0.96606 1.21735 0.98814 1.00342 0.98370 1.21556 1.02545 0.98331 0.95908 1.22089 0.92764 0.89494 0.95642 0.89938 0.94544 0.94511 0.92848 0.93194 0.88848 0.90035 0.92758 0.94513 0.92637 0.91260 0.88827 0.77167 0.91912 0.92308 0.92165 0.92586 0.92975 0.91569 0.90095 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.53 9.02 -35.23 -0.32 -6.85 16 3 C 0.04 0.67 6.28 37.16 0.23 0.91 16 4 C 0.14 2.28 5.79 -4.04 -0.02 2.26 16 5 N -0.98 -19.76 2.81 -115.66 -0.33 -20.08 16 6 C 0.21 5.05 4.34 -5.19 -0.02 5.02 16 7 C -0.54 -13.97 9.49 -34.43 -0.33 -14.29 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.90 -25.67 13.96 55.43 0.77 -24.89 16 11 Si 0.87 21.01 27.47 -169.99 -4.67 16.34 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 15 S 2.80 55.52 6.31 -107.50 -0.68 54.84 16 16 O -0.99 -19.62 16.43 -57.17 -0.94 -20.56 16 17 O -0.98 -22.44 16.27 -57.17 -0.93 -23.37 16 18 N -1.01 -17.39 3.74 -111.42 -0.42 -17.80 16 19 C 0.09 1.52 6.44 -3.07 -0.02 1.50 16 20 C 0.11 1.49 3.57 -24.90 -0.09 1.40 16 21 H 0.08 1.09 8.04 -51.92 -0.42 0.67 16 22 O -0.56 -7.21 12.14 -35.23 -0.43 -7.64 16 23 C -0.07 -0.85 0.88 -152.36 -0.13 -0.99 16 24 C -0.13 -1.43 8.68 37.16 0.32 -1.10 16 25 C -0.13 -1.59 8.16 37.15 0.30 -1.29 16 26 C 0.13 1.78 6.03 -2.53 -0.02 1.77 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.62 8.11 -51.93 -0.42 1.20 16 33 H 0.08 1.17 7.61 -51.93 -0.40 0.77 16 34 H 0.05 1.31 5.66 -51.93 -0.29 1.02 16 35 H 0.04 0.92 6.34 -51.93 -0.33 0.59 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 38 H 0.09 1.83 7.69 -51.92 -0.40 1.43 16 39 H 0.38 3.70 9.11 45.56 0.42 4.12 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 43 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.83 7.52 -51.93 -0.39 0.43 16 46 H 0.08 1.08 7.69 -51.93 -0.40 0.68 16 47 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -32.87 386.37 -8.13 -41.00 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.27 Total: 4.52 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 1.24 Total: -1.33 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.03 Total: -62.78 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -2.62 Total: -58.42 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Atomic # 16 Polarization: 55.52 SS G_CDS: -0.68 Total: 54.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.87 -8.13 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252527801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.888 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds