Wall clock time and date at job start Tue Mar 31 2020 05:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37098 * 119.99948 * 2 1 4 4 H 1.07993 * 120.00032 * 201.89544 * 3 2 1 5 5 C 1.38950 * 120.00081 * 21.88862 * 3 2 1 6 6 N 1.31411 * 119.99963 * 13.27212 * 5 3 2 7 7 Si 1.86797 * 120.00171 * 193.26942 * 5 3 2 8 8 H 1.48510 * 109.46792 * 60.00310 * 7 5 3 9 9 H 1.48501 * 109.47140 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47350 * 300.00351 * 7 5 3 11 11 C 1.34772 * 119.99991 * 179.97438 * 2 1 3 12 12 O 1.21288 * 120.00027 * 180.02562 * 11 2 1 13 13 C 1.50695 * 120.00171 * 0.02562 * 11 2 1 14 14 H 1.09003 * 110.89032 * 303.80638 * 13 11 2 15 15 C 1.54627 * 110.96899 * 67.61803 * 13 11 2 16 16 C 1.51286 * 104.19589 * 93.32056 * 15 13 11 17 17 O 1.21279 * 124.94516 * 196.22755 * 16 15 13 18 18 N 1.34421 * 110.11316 * 16.25302 * 16 15 13 19 19 C 1.46500 * 124.35017 * 180.42561 * 18 16 15 20 20 C 1.46761 * 111.30245 * 0.40752 * 18 16 15 21 21 H 1.08993 * 110.24564 * 223.89713 * 20 18 16 22 22 C 1.50708 * 110.24661 * 101.98245 * 20 18 16 23 23 C 1.38260 * 119.99255 * 321.43182 * 22 20 18 24 24 C 1.38214 * 120.02620 * 179.97438 * 23 22 20 25 25 C 1.38239 * 120.01632 * 0.02562 * 24 23 22 26 26 C 1.38335 * 119.98279 * 0.02562 * 25 24 23 27 27 Cl 1.73594 * 120.01124 * 180.25502 * 26 25 24 28 28 C 1.38189 * 119.99050 * 141.45552 * 22 20 18 29 29 H 1.09001 * 109.47559 * 274.54093 * 1 2 3 30 30 H 1.09002 * 109.47138 * 34.54348 * 1 2 3 31 31 H 1.09003 * 109.46947 * 154.53956 * 1 2 3 32 32 H 0.97006 * 120.00080 * 180.02562 * 6 5 3 33 33 H 1.09000 * 110.48770 * 334.64512 * 15 13 11 34 34 H 1.09003 * 110.60295 * 212.05245 * 15 13 11 35 35 H 1.09003 * 109.47306 * 269.98085 * 19 18 16 36 36 H 1.09009 * 109.47010 * 29.97649 * 19 18 16 37 37 H 1.08996 * 109.47290 * 149.97772 * 19 18 16 38 38 H 1.08002 * 119.99117 * 359.97438 * 23 22 20 39 39 H 1.08005 * 119.99662 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.00993 * 180.02562 * 25 24 23 41 41 H 1.07995 * 120.01203 * 0.02562 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1720 1.2211 -0.3488 5 6 1.5309 2.3473 0.4486 6 7 0.3976 2.2733 1.1096 7 14 2.3089 4.0119 0.1121 8 1 2.4304 4.2141 -1.3541 9 1 1.4571 5.0823 0.6900 10 1 3.6572 4.0625 0.7322 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3855 -2.4722 0.0005 14 1 0.7001 -2.5254 0.8465 15 6 0.6332 -2.6769 -1.3348 16 6 1.5958 -3.4775 -2.1840 17 8 1.5148 -3.6119 -3.3866 18 7 2.5536 -4.0187 -1.4116 19 6 3.6516 -4.8475 -1.9153 20 6 2.3583 -3.6723 0.0011 21 1 3.3080 -3.3893 0.4548 22 6 1.7520 -4.8348 0.7442 23 6 0.7843 -5.6139 0.1374 24 6 0.2281 -6.6806 0.8180 25 6 0.6387 -6.9687 2.1062 26 6 1.6061 -6.1889 2.7142 27 17 2.1270 -6.5541 4.3293 28 6 2.1630 -5.1215 2.0320 29 1 -0.3634 0.0814 1.0244 30 1 -0.3633 0.8465 -0.5827 31 1 -0.3633 -0.9279 -0.4418 32 1 -0.0352 3.0831 1.4225 33 1 0.4194 -1.7162 -1.8034 34 1 -0.2889 -3.2355 -1.1739 35 1 3.3471 -5.8941 -1.9137 36 1 3.8999 -4.5429 -2.9321 37 1 4.5247 -4.7221 -1.2750 38 1 0.4628 -5.3890 -0.8688 39 1 -0.5275 -7.2891 0.3434 40 1 0.2044 -7.8025 2.6378 41 1 2.9182 -4.5124 2.5062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265205998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:27 Heat of formation + Delta-G solvation = -29.061348 kcal Electronic energy + Delta-G solvation = -27263.409872 eV Core-core repulsion = 23362.853351 eV Total energy + Delta-G solvation = -3900.556521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10961 -39.10046 -38.27483 -36.72542 -36.00280 -34.72289 -32.89695 -31.80357 -31.27009 -30.72324 -27.25731 -26.99021 -26.03295 -24.80637 -23.06485 -22.79030 -21.33142 -19.56974 -18.84870 -17.67168 -16.97688 -16.53040 -16.21496 -15.82043 -15.49246 -15.32440 -14.79544 -14.61811 -14.24766 -14.09875 -13.87788 -13.69902 -13.44615 -13.20824 -12.95828 -12.64462 -12.48201 -12.19771 -11.92868 -11.82025 -11.69397 -11.57108 -11.43034 -11.29626 -11.14924 -11.04911 -10.97355 -10.83480 -10.44466 -10.32216 -9.59579 -9.12704 -9.09532 -8.89238 -8.64201 -8.48327 -7.77791 -6.38395 -3.95086 0.95427 1.05948 1.95572 2.75051 3.11553 3.14495 3.21598 3.25247 3.43851 3.69077 4.04309 4.38452 4.49728 4.60304 4.67203 4.79580 4.90213 5.03006 5.06851 5.16438 5.22265 5.34040 5.40681 5.45533 5.57481 5.67237 5.72310 5.80422 5.83722 5.95455 6.00050 6.06942 6.12613 6.22835 6.30962 6.58346 6.68610 6.78544 7.15393 7.22955 7.50273 8.02768 8.32901 8.38513 9.09219 9.32694 9.85649 10.64322 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.003729 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.735351 B = 7507.756132 C = 8736.750125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.436 5.436 3 C -0.309 4.309 4 H 0.099 0.901 5 C 0.034 3.966 6 N -0.879 5.879 7 Si 0.926 3.074 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.272 1.272 11 C 0.449 3.551 12 O -0.584 6.584 13 C -0.101 4.101 14 H 0.111 0.889 15 C -0.152 4.152 16 C 0.523 3.477 17 O -0.537 6.537 18 N -0.606 5.606 19 C 0.100 3.900 20 C 0.188 3.812 21 H 0.118 0.882 22 C -0.078 4.078 23 C -0.099 4.099 24 C -0.107 4.107 25 C -0.112 4.112 26 C -0.033 4.033 27 Cl -0.073 7.073 28 C -0.095 4.095 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.269 0.731 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -16.931 2.286 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.153 5.153 3 C -0.437 4.437 4 H 0.117 0.883 5 C -0.170 4.170 6 N -0.518 5.518 7 Si 0.753 3.247 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.236 3.764 12 O -0.469 6.469 13 C -0.123 4.123 14 H 0.129 0.871 15 C -0.192 4.192 16 C 0.311 3.689 17 O -0.414 6.414 18 N -0.338 5.338 19 C -0.042 4.042 20 C 0.083 3.917 21 H 0.135 0.865 22 C -0.079 4.079 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.059 4.059 27 Cl -0.044 7.044 28 C -0.114 4.114 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.103 -16.894 1.838 17.123 hybrid contribution 0.135 0.854 0.259 0.902 sum -1.968 -16.040 2.097 16.296 Atomic orbital electron populations 1.21738 0.81065 0.98968 1.02527 1.43494 1.05565 1.04570 1.61675 1.19616 0.99351 0.83528 1.41164 0.88298 1.25327 0.96466 1.00076 0.95131 1.69986 1.17835 1.29498 1.34461 0.85993 0.79036 0.80783 0.78896 1.19854 1.20886 1.19731 1.19469 0.87811 0.84173 0.84935 1.90520 1.13589 1.86556 1.56245 1.22209 0.97252 0.94048 0.98817 0.87059 1.22568 0.98479 1.02752 0.95396 1.20854 0.82075 0.78788 0.87179 1.90690 1.75033 1.62357 1.13337 1.48036 1.27234 1.51120 1.07428 1.21500 0.88682 0.93544 1.00476 1.20405 1.00546 0.89826 0.80916 0.86463 1.20147 0.96775 0.97044 0.93973 1.21104 0.95654 0.94823 1.00148 1.21084 0.99921 0.97547 0.93953 1.21047 0.96791 0.99754 0.95489 1.20871 0.99441 0.98367 0.87244 1.98374 1.89971 1.94233 1.21790 1.20951 1.00304 0.96172 0.93962 0.91794 0.91477 0.94665 0.92085 0.86799 0.87477 0.92937 0.90746 0.90898 0.85770 0.85076 0.85071 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.09 8.12 59.85 0.49 2.57 16 2 N -0.44 -10.52 3.01 -122.19 -0.37 -10.89 16 3 C -0.31 -8.31 9.29 -14.93 -0.14 -8.45 16 4 H 0.10 2.81 7.40 -52.49 -0.39 2.42 16 5 C 0.03 0.86 5.09 -17.47 -0.09 0.78 16 6 N -0.88 -22.54 10.66 55.50 0.59 -21.94 16 7 Si 0.93 20.30 29.57 -169.99 -5.03 15.28 16 8 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 C 0.45 10.10 6.95 -10.99 -0.08 10.02 16 12 O -0.58 -15.02 15.22 5.55 0.08 -14.94 16 13 C -0.10 -1.67 2.08 -90.14 -0.19 -1.86 16 14 H 0.11 1.66 7.79 -51.93 -0.40 1.26 16 15 C -0.15 -2.31 4.50 -26.74 -0.12 -2.43 16 16 C 0.52 8.93 6.93 -10.86 -0.08 8.85 16 17 O -0.54 -10.73 17.59 5.56 0.10 -10.64 16 18 N -0.61 -9.20 2.48 -174.02 -0.43 -9.63 16 19 C 0.10 1.27 10.95 59.85 0.66 1.92 16 20 C 0.19 2.78 2.68 -68.16 -0.18 2.59 16 21 H 0.12 1.93 6.92 -51.93 -0.36 1.57 16 22 C -0.08 -0.95 4.88 -104.63 -0.51 -1.46 16 23 C -0.10 -1.08 9.02 -39.58 -0.36 -1.44 16 24 C -0.11 -0.99 10.05 -39.59 -0.40 -1.39 16 25 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 26 C -0.03 -0.35 6.32 -39.49 -0.25 -0.60 16 27 Cl -0.07 -0.76 28.96 -51.86 -1.50 -2.26 16 28 C -0.09 -1.12 9.46 -39.55 -0.37 -1.49 16 29 H 0.06 1.39 7.41 -51.93 -0.38 1.00 16 30 H 0.07 1.48 7.24 -51.93 -0.38 1.11 16 31 H 0.03 0.58 4.48 -51.93 -0.23 0.35 16 32 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 33 H 0.11 1.90 6.36 -51.93 -0.33 1.57 16 34 H 0.11 1.27 7.86 -51.93 -0.41 0.86 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.99 7.93 -51.92 -0.41 0.58 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.12 1.38 6.19 -52.49 -0.33 1.06 16 39 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.14 1.60 8.05 -52.49 -0.42 1.18 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -31.46 353.33 -8.11 -39.57 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.87 Total: 3.96 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -2.01 Total: 6.17 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.21 Total: -42.47 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: 0.18 Total: -25.57 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.46 -8.11 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265205998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.505 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds