Wall clock time and date at job start Tue Mar 31 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37099 * 119.99959 * 2 1 4 4 H 1.07994 * 120.00421 * 199.09530 * 3 2 1 5 5 C 1.38956 * 120.00077 * 19.10035 * 3 2 1 6 6 N 1.31409 * 120.00251 * 204.87454 * 5 3 2 7 7 Si 1.86799 * 119.99773 * 24.86821 * 5 3 2 8 8 H 1.48500 * 109.47602 * 265.70191 * 7 5 3 9 9 H 1.48499 * 109.47333 * 25.70221 * 7 5 3 10 10 H 1.48502 * 109.47235 * 145.70472 * 7 5 3 11 11 C 1.34771 * 120.00216 * 180.02562 * 2 1 3 12 12 O 1.21297 * 120.00183 * 184.63020 * 11 2 1 13 13 C 1.50702 * 120.00053 * 4.63304 * 11 2 1 14 14 H 1.08999 * 110.85729 * 40.24176 * 13 11 2 15 15 C 1.54634 * 110.96582 * 276.41247 * 13 11 2 16 16 C 1.51286 * 104.19245 * 217.07989 * 15 13 11 17 17 O 1.21273 * 124.94265 * 196.24992 * 16 15 13 18 18 N 1.34422 * 110.11623 * 16.25690 * 16 15 13 19 19 C 1.46493 * 124.35046 * 180.38317 * 18 16 15 20 20 C 1.46762 * 111.30179 * 0.40356 * 18 16 15 21 21 H 1.08999 * 110.24847 * 101.98413 * 20 18 16 22 22 C 1.50696 * 110.32287 * 223.94881 * 20 18 16 23 23 C 1.38270 * 119.99170 * 35.81351 * 22 20 18 24 24 C 1.38220 * 120.02251 * 179.77112 * 23 22 20 25 25 C 1.38231 * 120.01596 * 0.50766 * 24 23 22 26 26 C 1.38329 * 119.98810 * 359.74520 * 25 24 23 27 27 Cl 1.73601 * 120.01711 * 180.02562 * 26 25 24 28 28 C 1.38192 * 119.99508 * 216.09098 * 22 20 18 29 29 H 1.08997 * 109.47544 * 32.20327 * 1 2 3 30 30 H 1.09003 * 109.47085 * 152.21168 * 1 2 3 31 31 H 1.09005 * 109.47105 * 272.21073 * 1 2 3 32 32 H 0.96998 * 119.99755 * 354.90994 * 6 5 3 33 33 H 1.08997 * 110.48818 * 335.75648 * 15 13 11 34 34 H 1.08993 * 110.48425 * 98.40830 * 15 13 11 35 35 H 1.08998 * 109.47530 * 270.02531 * 19 18 16 36 36 H 1.09001 * 109.46959 * 30.02545 * 19 18 16 37 37 H 1.09001 * 109.47276 * 150.02042 * 19 18 16 38 38 H 1.07997 * 119.98726 * 359.97438 * 23 22 20 39 39 H 1.07999 * 119.98823 * 180.25288 * 24 23 22 40 40 H 1.07999 * 120.00922 * 179.76551 * 25 24 23 41 41 H 1.07996 * 120.00637 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1858 1.2131 -0.3059 5 6 1.5130 2.3576 0.3938 6 7 1.9455 3.5197 -0.0413 7 14 0.0413 2.2788 1.5415 8 1 -1.2100 2.2681 0.7419 9 1 0.1168 1.0414 2.3590 10 1 0.0470 3.4642 2.4359 11 6 2.1388 -1.1671 -0.0005 12 8 3.3489 -1.1689 0.0843 13 6 1.3891 -2.4701 -0.1065 14 1 0.5698 -2.3894 -0.8209 15 6 0.8740 -2.9263 1.2783 16 6 1.0293 -4.4310 1.2545 17 8 0.4910 -5.1971 2.0253 18 7 1.8509 -4.7952 0.2549 19 6 2.2112 -6.1808 -0.0556 20 6 2.3409 -3.6265 -0.4852 21 1 3.3611 -3.3894 -0.1834 22 6 2.2834 -3.8846 -1.9688 23 6 1.2471 -4.6293 -2.5011 24 6 1.1911 -4.8624 -3.8623 25 6 2.1768 -4.3600 -4.6910 26 6 3.2167 -3.6194 -4.1584 27 17 4.4547 -2.9876 -5.1986 28 6 3.2694 -3.3818 -2.7962 29 1 -0.3634 0.8695 -0.5476 30 1 -0.3633 -0.9092 -0.4791 31 1 -0.3633 0.0396 1.0269 32 1 2.7528 3.5672 -0.5768 33 1 1.4811 -2.4927 2.0729 34 1 -0.1735 -2.6529 1.4046 35 1 3.1043 -6.4582 0.5043 36 1 1.3891 -6.8408 0.2214 37 1 2.4082 -6.2744 -1.1236 38 1 0.4793 -5.0261 -1.8534 39 1 0.3792 -5.4407 -4.2780 40 1 2.1350 -4.5455 -5.7542 41 1 4.0810 -2.8036 -2.3798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265206003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:32 Heat of formation + Delta-G solvation = -26.539933 kcal Electronic energy + Delta-G solvation = -27416.823299 eV Core-core repulsion = 23516.376115 eV Total energy + Delta-G solvation = -3900.447184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12009 -39.15702 -38.60706 -36.72999 -36.10722 -34.95259 -32.95789 -32.03590 -31.66666 -30.80256 -27.25926 -27.00365 -26.55883 -24.87762 -22.89243 -22.83878 -21.35515 -19.55657 -18.80640 -17.69718 -17.55147 -16.92473 -16.40164 -15.84657 -15.64234 -15.34862 -15.00080 -14.92318 -14.73736 -14.02666 -13.92926 -13.72490 -13.54318 -13.38935 -13.25501 -12.69661 -12.65150 -12.43826 -12.27071 -12.25739 -11.95841 -11.73825 -11.62649 -11.56190 -11.25456 -11.05676 -10.87055 -10.62176 -10.04682 -9.87938 -9.64990 -9.19102 -9.11533 -8.83825 -8.81490 -8.56028 -8.00910 -6.91353 -3.98513 0.95249 1.09261 2.02812 2.58344 2.91148 3.06210 3.19424 3.31582 3.41677 3.52158 4.10494 4.13301 4.33391 4.44983 4.65414 4.73620 4.89168 4.94366 5.02819 5.05998 5.20261 5.22972 5.26593 5.30668 5.42434 5.46681 5.61391 5.65402 5.72147 5.72666 5.84216 5.90113 6.02384 6.06386 6.11429 6.18878 6.28305 6.49494 6.62484 7.03113 7.76555 7.91904 8.14577 8.26851 8.98526 9.13065 9.66212 10.51906 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.009826 B = 0.004872 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.849313 B = 5745.402047 C = 7795.775677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.445 5.445 3 C -0.397 4.397 4 H 0.100 0.900 5 C 0.012 3.988 6 N -0.867 5.867 7 Si 1.061 2.939 8 H -0.283 1.283 9 H -0.280 1.280 10 H -0.287 1.287 11 C 0.453 3.547 12 O -0.574 6.574 13 C -0.107 4.107 14 H 0.103 0.897 15 C -0.143 4.143 16 C 0.524 3.476 17 O -0.535 6.535 18 N -0.615 5.615 19 C 0.093 3.907 20 C 0.186 3.814 21 H 0.115 0.885 22 C -0.078 4.078 23 C -0.103 4.103 24 C -0.110 4.110 25 C -0.110 4.110 26 C -0.033 4.033 27 Cl -0.070 7.070 28 C -0.085 4.085 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.277 0.723 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 -16.628 -7.294 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.164 5.164 3 C -0.523 4.523 4 H 0.117 0.883 5 C -0.196 4.196 6 N -0.501 5.501 7 Si 0.890 3.110 8 H -0.209 1.209 9 H -0.206 1.206 10 H -0.214 1.214 11 C 0.241 3.759 12 O -0.458 6.458 13 C -0.130 4.130 14 H 0.121 0.879 15 C -0.184 4.184 16 C 0.312 3.688 17 O -0.412 6.412 18 N -0.348 5.348 19 C -0.049 4.049 20 C 0.082 3.918 21 H 0.133 0.867 22 C -0.079 4.079 23 C -0.122 4.122 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.059 4.059 27 Cl -0.041 7.041 28 C -0.104 4.104 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.158 -16.070 -6.236 17.732 hybrid contribution 1.236 -0.701 -1.000 1.737 sum -2.922 -16.771 -7.235 18.498 Atomic orbital electron populations 1.22299 0.83326 1.03142 1.01760 1.43708 1.04004 1.05766 1.62921 1.20652 1.00027 0.83491 1.48175 0.88257 1.26331 1.04157 0.91255 0.97849 1.70775 1.22040 1.25842 1.31434 0.83953 0.74703 0.75558 0.76809 1.20942 1.20631 1.21440 1.19287 0.87903 0.83682 0.85059 1.90538 1.13713 1.86152 1.55401 1.22243 0.98651 0.94483 0.97590 0.87882 1.22374 1.04759 0.92869 0.98359 1.20824 0.77350 0.90969 0.79607 1.90701 1.49730 1.58710 1.42093 1.48199 1.47555 1.06734 1.32356 1.21594 1.01096 0.80736 1.01439 1.20540 1.00613 0.83723 0.86931 0.86707 1.19854 0.94879 0.98210 0.94989 1.21106 0.97738 0.98091 0.95225 1.21052 0.98492 1.00149 0.93156 1.21062 0.93463 0.97809 1.00570 1.20889 0.92862 1.00717 0.91443 1.98378 1.53151 1.85838 1.66726 1.21038 0.99414 0.98787 0.91170 0.90158 0.91568 0.92549 0.91155 0.86911 0.87394 0.92528 0.90673 0.90801 0.85477 0.85069 0.85039 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 7.93 59.84 0.47 1.17 16 2 N -0.45 -10.08 2.87 -122.19 -0.35 -10.43 16 3 C -0.40 -10.66 9.56 -14.93 -0.14 -10.80 16 4 H 0.10 3.01 7.59 -52.49 -0.40 2.62 16 5 C 0.01 0.33 5.19 -17.47 -0.09 0.24 16 6 N -0.87 -24.40 13.69 55.50 0.76 -23.64 16 7 Si 1.06 22.87 24.43 -169.99 -4.15 18.72 16 8 H -0.28 -5.50 6.83 56.52 0.39 -5.11 16 9 H -0.28 -5.64 6.23 56.52 0.35 -5.28 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 C 0.45 9.58 6.79 -10.99 -0.07 9.50 16 12 O -0.57 -14.12 15.23 5.54 0.08 -14.03 16 13 C -0.11 -1.67 2.09 -90.13 -0.19 -1.86 16 14 H 0.10 1.43 6.30 -51.93 -0.33 1.11 16 15 C -0.14 -2.09 6.26 -26.74 -0.17 -2.25 16 16 C 0.52 7.91 8.02 -10.86 -0.09 7.82 16 17 O -0.54 -9.52 17.59 5.56 0.10 -9.42 16 18 N -0.61 -8.10 2.57 -174.03 -0.45 -8.55 16 19 C 0.09 0.98 10.17 59.84 0.61 1.58 16 20 C 0.19 2.65 2.97 -68.16 -0.20 2.45 16 21 H 0.12 1.88 6.76 -51.93 -0.35 1.53 16 22 C -0.08 -1.00 4.19 -104.63 -0.44 -1.44 16 23 C -0.10 -1.10 7.80 -39.58 -0.31 -1.41 16 24 C -0.11 -1.03 10.04 -39.59 -0.40 -1.43 16 25 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 26 C -0.03 -0.40 6.32 -39.50 -0.25 -0.65 16 27 Cl -0.07 -0.86 28.96 -51.86 -1.50 -2.36 16 28 C -0.09 -1.17 9.47 -39.55 -0.37 -1.54 16 29 H 0.08 1.51 6.15 -51.93 -0.32 1.19 16 30 H 0.07 0.94 5.88 -51.93 -0.31 0.64 16 31 H 0.06 0.97 4.94 -51.93 -0.26 0.72 16 32 H 0.28 7.81 8.73 -40.82 -0.36 7.45 16 33 H 0.11 1.77 7.89 -51.93 -0.41 1.36 16 34 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 37 H 0.07 0.67 6.18 -51.93 -0.32 0.35 16 38 H 0.13 1.26 7.39 -52.49 -0.39 0.87 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -31.75 348.35 -7.11 -38.86 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.82 Total: 5.76 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.03 Total: -0.15 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.04 Total: -42.62 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.18 Total: -23.45 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.15 Total: 18.72 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.75 -7.11 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265206003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.319 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds