Wall clock time and date at job start Tue Mar 31 2020 05:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37104 * 120.00240 * 2 1 4 4 H 1.07999 * 119.99329 * 141.45756 * 3 2 1 5 5 C 1.38946 * 119.99897 * 321.46086 * 3 2 1 6 6 N 1.31406 * 120.00145 * 171.19443 * 5 3 2 7 7 Si 1.86802 * 119.99970 * 351.19466 * 5 3 2 8 8 H 1.48505 * 109.46828 * 92.15544 * 7 5 3 9 9 H 1.48501 * 109.47076 * 212.15543 * 7 5 3 10 10 H 1.48494 * 109.47222 * 332.15817 * 7 5 3 11 11 C 1.34782 * 119.99890 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00163 * 174.73162 * 11 2 1 13 13 C 1.50702 * 119.99796 * 354.99833 * 11 2 1 14 14 H 1.08995 * 110.85771 * 343.42712 * 13 11 2 15 15 C 1.54631 * 110.96641 * 219.63749 * 13 11 2 16 16 C 1.51283 * 104.19580 * 266.67900 * 15 13 11 17 17 O 1.21277 * 124.94141 * 163.71286 * 16 15 13 18 18 N 1.34415 * 110.11409 * 343.75011 * 16 15 13 19 19 C 1.46508 * 124.35020 * 179.56868 * 18 16 15 20 20 C 1.46763 * 111.30430 * 359.59514 * 18 16 15 21 21 H 1.09007 * 110.24361 * 258.01206 * 20 18 16 22 22 C 1.50699 * 110.24881 * 136.01818 * 20 18 16 23 23 C 1.38269 * 119.99270 * 144.85109 * 22 20 18 24 24 C 1.38214 * 120.01980 * 179.97438 * 23 22 20 25 25 C 1.38233 * 120.01960 * 0.02562 * 24 23 22 26 26 C 1.38325 * 119.98615 * 359.97438 * 25 24 23 27 27 Cl 1.73605 * 120.01666 * 179.97438 * 26 25 24 28 28 C 1.38194 * 119.99031 * 324.57370 * 22 20 18 29 29 H 1.08995 * 109.46875 * 264.45542 * 1 2 3 30 30 H 1.08994 * 109.46953 * 24.45368 * 1 2 3 31 31 H 1.09001 * 109.47357 * 144.45533 * 1 2 3 32 32 H 0.96996 * 120.00218 * 179.97438 * 6 5 3 33 33 H 1.09000 * 110.48982 * 25.36318 * 15 13 11 34 34 H 1.09005 * 110.48098 * 147.86993 * 15 13 11 35 35 H 1.09004 * 109.46500 * 0.02562 * 19 18 16 36 36 H 1.08993 * 109.46878 * 120.01966 * 19 18 16 37 37 H 1.08996 * 109.47144 * 240.03082 * 19 18 16 38 38 H 1.07994 * 119.98937 * 359.97278 * 23 22 20 39 39 H 1.08008 * 119.99202 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.00667 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.00625 * 0.02562 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.0541 1.2890 0.5828 5 6 1.6829 2.2596 -0.7497 6 7 2.2355 3.4444 -0.6177 7 14 0.2683 2.0169 -1.9454 8 1 -1.0152 2.3154 -1.2608 9 1 0.4363 2.9315 -3.1032 10 1 0.2593 0.6107 -2.4227 11 6 2.1389 -1.1673 -0.0005 12 8 3.3479 -1.1695 -0.0970 13 6 1.3896 -2.4699 0.1127 14 1 0.3748 -2.3038 0.4740 15 6 2.1452 -3.4655 1.0232 16 6 2.9875 -4.2786 0.0651 17 8 3.9291 -4.9727 0.3852 18 7 2.5410 -4.1193 -1.1927 19 6 3.1363 -4.7590 -2.3686 20 6 1.3808 -3.2215 -1.2368 21 1 0.4616 -3.7980 -1.3415 22 6 1.5187 -2.2467 -2.3778 23 6 0.3979 -1.8367 -3.0759 24 6 0.5237 -0.9422 -4.1221 25 6 1.7702 -0.4574 -4.4713 26 6 2.8919 -0.8673 -3.7733 27 17 4.4578 -0.2594 -4.2117 28 6 2.7648 -1.7584 -2.7223 29 1 -0.3633 -0.0993 1.0228 30 1 -0.3633 0.9354 -0.4254 31 1 -0.3634 -0.8362 -0.5974 32 1 1.9093 4.1929 -1.1413 33 1 2.7799 -2.9304 1.7295 34 1 1.4413 -4.1066 1.5540 35 1 3.9826 -5.3723 -2.0590 36 1 2.3914 -5.3875 -2.8564 37 1 3.4780 -3.9932 -3.0649 38 1 -0.5761 -2.2155 -2.8037 39 1 -0.3522 -0.6219 -4.6669 40 1 1.8683 0.2418 -5.2886 41 1 3.6396 -2.0756 -2.1742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265206005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:34 Heat of formation + Delta-G solvation = -10.356354 kcal Electronic energy + Delta-G solvation = -29002.223826 eV Core-core repulsion = 25102.478415 eV Total energy + Delta-G solvation = -3899.745411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14326 -38.84320 -38.32266 -36.34481 -35.87238 -34.84034 -32.79142 -31.91405 -31.38844 -30.48603 -27.20122 -26.82483 -26.51938 -25.03772 -22.81751 -22.47255 -21.32486 -19.42557 -18.74880 -17.25621 -17.06027 -16.94663 -16.18053 -15.94247 -15.42849 -15.30597 -14.93697 -14.61142 -14.53830 -13.81624 -13.52554 -13.45556 -13.35496 -13.08896 -12.88911 -12.79590 -12.42345 -12.32713 -12.18755 -12.02492 -11.91718 -11.74069 -11.39070 -11.29105 -11.22395 -11.05616 -10.62236 -10.44702 -10.23068 -9.75621 -9.60198 -9.09708 -8.78828 -8.56820 -8.47426 -8.34561 -7.75860 -6.33835 -4.00974 1.32249 1.52004 2.49408 2.78009 3.00281 3.12708 3.18717 3.23622 3.50629 3.81332 4.12940 4.21181 4.42090 4.56809 4.86809 4.92323 5.02498 5.09607 5.16922 5.23781 5.33413 5.37525 5.40093 5.55643 5.58631 5.65574 5.69698 5.79031 5.81517 5.90543 5.96115 6.01822 6.10675 6.13659 6.45683 6.47695 6.53051 6.71224 6.99168 7.22521 7.54354 8.24265 8.35346 8.47459 8.93592 9.28659 9.70601 10.77084 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.011305 B = 0.007085 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.281350 B = 3951.081457 C = 4863.657721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.460 5.460 3 C -0.307 4.307 4 H 0.104 0.896 5 C 0.057 3.943 6 N -0.873 5.873 7 Si 0.876 3.124 8 H -0.285 1.285 9 H -0.297 1.297 10 H -0.233 1.233 11 C 0.475 3.525 12 O -0.550 6.550 13 C -0.121 4.121 14 H 0.109 0.891 15 C -0.136 4.136 16 C 0.535 3.465 17 O -0.536 6.536 18 N -0.612 5.612 19 C 0.092 3.908 20 C 0.196 3.804 21 H 0.095 0.905 22 C -0.098 4.098 23 C -0.102 4.102 24 C -0.105 4.105 25 C -0.109 4.109 26 C -0.025 4.025 27 Cl -0.072 7.072 28 C -0.058 4.058 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.272 0.728 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.990 -12.407 -6.554 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.182 5.182 3 C -0.434 4.434 4 H 0.121 0.879 5 C -0.148 4.148 6 N -0.510 5.510 7 Si 0.705 3.295 8 H -0.213 1.213 9 H -0.225 1.225 10 H -0.156 1.156 11 C 0.262 3.738 12 O -0.431 6.431 13 C -0.144 4.144 14 H 0.127 0.873 15 C -0.176 4.176 16 C 0.323 3.677 17 O -0.413 6.413 18 N -0.346 5.346 19 C -0.049 4.049 20 C 0.091 3.909 21 H 0.113 0.887 22 C -0.099 4.099 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.128 4.128 26 C -0.052 4.052 27 Cl -0.043 7.043 28 C -0.076 4.076 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.667 -12.547 -6.590 16.114 hybrid contribution -0.873 0.642 -0.678 1.279 sum -8.541 -11.905 -7.269 16.356 Atomic orbital electron populations 1.22084 0.84202 1.01222 1.00690 1.43550 1.03554 1.05595 1.65484 1.19034 1.10532 0.85883 1.27967 0.87890 1.25395 0.98084 0.95129 0.96237 1.69647 1.41539 1.00042 1.39813 0.87076 0.80927 0.80571 0.80883 1.21326 1.22485 1.15603 1.19535 0.88082 0.83671 0.82491 1.90599 1.13778 1.86274 1.52446 1.22524 1.01853 0.95466 0.94521 0.87266 1.22237 0.99799 0.97457 0.98144 1.20671 0.83295 0.80286 0.83428 1.90682 1.28466 1.41755 1.80431 1.48045 1.31797 1.47198 1.07569 1.21590 0.98660 0.97528 0.87155 1.20357 0.89266 0.88610 0.92630 0.88698 1.19675 0.93471 0.99383 0.97344 1.20856 0.97657 0.98051 0.95474 1.20836 0.96580 0.97316 0.97564 1.21006 0.91537 0.99982 1.00297 1.20815 0.86748 0.99138 0.98474 1.98360 1.26746 1.86973 1.92202 1.21038 0.98567 0.94322 0.93698 0.93153 0.92063 0.92596 0.91759 0.87161 0.87581 0.89951 0.92271 0.91871 0.85740 0.85591 0.85538 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 7.86 59.85 0.47 1.54 16 2 N -0.46 -10.05 2.66 -122.19 -0.32 -10.38 16 3 C -0.31 -8.28 9.44 -14.93 -0.14 -8.42 16 4 H 0.10 3.22 7.98 -52.49 -0.42 2.80 16 5 C 0.06 1.52 5.46 -17.47 -0.10 1.43 16 6 N -0.87 -25.30 13.96 55.50 0.77 -24.52 16 7 Si 0.88 19.18 24.53 -169.99 -4.17 15.01 16 8 H -0.28 -6.01 6.79 56.52 0.38 -5.63 16 9 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.23 -4.43 3.42 56.52 0.19 -4.24 16 11 C 0.48 9.75 4.43 -10.98 -0.05 9.70 16 12 O -0.55 -13.60 14.16 5.55 0.08 -13.52 16 13 C -0.12 -1.78 2.69 -90.14 -0.24 -2.03 16 14 H 0.11 1.26 6.38 -51.93 -0.33 0.93 16 15 C -0.14 -1.95 6.14 -26.74 -0.16 -2.12 16 16 C 0.53 8.98 7.81 -10.86 -0.08 8.90 16 17 O -0.54 -10.77 17.35 5.56 0.10 -10.67 16 18 N -0.61 -8.89 2.57 -174.02 -0.45 -9.33 16 19 C 0.09 1.16 10.34 59.85 0.62 1.78 16 20 C 0.20 2.58 3.43 -68.17 -0.23 2.35 16 21 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 22 C -0.10 -1.45 3.78 -104.63 -0.40 -1.84 16 23 C -0.10 -1.31 8.40 -39.58 -0.33 -1.65 16 24 C -0.10 -1.41 8.04 -39.59 -0.32 -1.73 16 25 C -0.11 -1.70 9.74 -39.55 -0.39 -2.09 16 26 C -0.03 -0.44 6.32 -39.50 -0.25 -0.69 16 27 Cl -0.07 -1.28 28.96 -51.86 -1.50 -2.78 16 28 C -0.06 -1.02 5.38 -39.55 -0.21 -1.23 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.18 2.60 -51.93 -0.13 1.04 16 31 H 0.06 0.78 6.33 -51.93 -0.33 0.45 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.11 1.79 7.81 -51.93 -0.41 1.39 16 34 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.07 7.53 -51.93 -0.39 0.68 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.82 6.03 -51.93 -0.31 0.51 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.14 2.90 6.01 -52.49 -0.32 2.58 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -34.18 336.41 -7.19 -41.38 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.96 Total: 5.85 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.81 Total: 3.89 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.00 Total: -44.23 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.18 Total: -24.19 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.17 Total: 15.01 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.50 Total: -2.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.18 -7.19 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265206005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.022 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds