Wall clock time and date at job start Tue Mar 31 2020 05:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35839 * 117.00168 * 2 1 4 4 C 1.39094 * 120.85612 * 359.97270 * 3 2 1 5 5 C 1.38068 * 119.15087 * 180.02562 * 4 3 2 6 6 N 1.31926 * 120.92204 * 359.72240 * 5 4 3 7 7 C 1.31972 * 121.89220 * 0.57079 * 6 5 4 8 8 C 1.50699 * 119.62613 * 179.70688 * 7 6 5 9 9 S 1.81000 * 109.46881 * 269.72824 * 8 7 6 10 10 C 1.76206 * 99.99929 * 180.02562 * 9 8 7 11 11 N 1.32384 * 126.25696 * 0.02562 * 10 9 8 12 12 N 1.28511 * 110.20415 * 179.97438 * 11 10 9 13 13 C 1.33098 * 109.74841 * 0.02562 * 12 11 10 14 14 C 1.39778 * 126.57000 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99928 * 180.02562 * 14 13 12 16 16 C 1.40083 * 119.99583 * 0.02642 * 14 13 12 17 17 N 1.30819 * 120.00168 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99562 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47294 * 60.00050 * 18 16 14 20 20 H 1.48500 * 109.46828 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46979 * 299.99226 * 18 16 14 22 22 N 1.36671 * 126.25909 * 179.71272 * 10 9 8 23 23 C 1.46501 * 127.15088 * 0.03288 * 22 10 9 24 24 C 1.38422 * 120.74460 * 359.43040 * 7 6 5 25 25 O 1.36010 * 120.49550 * 180.29879 * 24 7 6 26 26 C 1.42896 * 116.99800 * 89.99819 * 25 24 7 27 27 H 1.08997 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47286 * 300.00150 * 1 2 3 29 29 H 1.09002 * 109.46811 * 60.00240 * 1 2 3 30 30 H 1.07999 * 120.42680 * 0.04573 * 4 3 2 31 31 H 1.07999 * 119.53884 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47247 * 149.72780 * 8 7 6 33 33 H 1.09001 * 109.47358 * 29.72206 * 8 7 6 34 34 H 0.96997 * 120.00016 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.46904 * 90.02547 * 23 22 10 36 36 H 1.09003 * 109.47048 * 210.02525 * 23 22 10 37 37 H 1.08995 * 109.47319 * 330.02386 * 23 22 10 38 38 H 1.08996 * 109.47395 * 299.99741 * 26 25 24 39 39 H 1.08997 * 109.46868 * 60.00459 * 26 25 24 40 40 H 1.09009 * 109.47018 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.3057 2.3881 -0.0006 5 6 1.9689 3.5990 -0.0011 6 7 3.2871 3.6500 0.0044 7 6 4.0272 2.5574 -0.0005 8 6 5.5296 2.6752 -0.0005 9 16 6.1311 2.7216 -1.7070 10 6 7.8639 2.8568 -1.4171 11 7 8.4587 2.9030 -0.2353 12 7 9.7315 3.0018 -0.3826 13 6 10.0337 3.0258 -1.6786 14 6 11.3126 3.1258 -2.2338 15 1 11.4362 3.1362 -3.3066 16 6 12.4338 3.2125 -1.3986 17 7 12.2840 3.2004 -0.0991 18 14 14.1429 3.3468 -2.1406 19 1 14.2241 4.5702 -2.9783 20 1 15.1502 3.4249 -1.0523 21 1 14.4129 2.1525 -2.9808 22 7 8.8400 2.9271 -2.3711 23 6 8.6595 2.9062 -3.8248 24 6 3.4390 1.3043 0.0000 25 8 4.2066 0.1815 0.0010 26 6 4.5722 -0.3532 1.2747 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2262 2.3557 -0.0003 31 1 1.4005 4.5174 -0.0020 32 1 5.9614 1.8165 0.5137 33 1 5.8223 3.5911 0.5129 34 1 13.0604 3.2608 0.4792 35 1 8.5365 3.9257 -4.1903 36 1 9.5344 2.4554 -4.2931 37 1 7.7733 2.3221 -4.0725 38 1 5.1415 0.3912 1.8315 39 1 3.6720 -0.6134 1.8315 40 1 5.1818 -1.2456 1.1327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280025802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:37 Heat of formation + Delta-G solvation = 39.261662 kcal Electronic energy + Delta-G solvation = -25843.781305 eV Core-core repulsion = 21980.523950 eV Total energy + Delta-G solvation = -3863.257355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.104 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.13594 -40.44812 -38.69375 -37.88566 -33.65691 -33.29814 -32.61861 -31.16907 -29.32571 -28.59563 -27.60041 -26.57682 -26.29733 -25.41033 -23.24915 -22.15269 -20.77707 -20.38532 -18.43696 -17.80669 -17.54745 -17.29644 -16.46977 -16.12494 -15.49773 -15.38374 -15.31384 -14.67376 -14.60269 -14.50170 -14.23438 -14.15273 -13.82940 -13.29263 -12.98555 -12.81333 -12.49104 -12.21126 -12.16915 -12.08539 -11.90034 -11.53852 -11.36082 -11.25744 -10.88975 -10.51390 -10.43079 -10.31100 -9.67218 -9.57209 -9.48361 -9.18972 -8.81669 -8.64068 -8.35886 -8.32843 -6.74595 -6.60871 -4.52618 0.62274 1.01677 2.16466 2.74613 2.84458 2.96271 3.08767 3.10948 3.36054 3.40918 3.77206 3.90815 4.11389 4.29236 4.39817 4.46929 4.56359 4.72741 4.75118 4.86356 5.06240 5.15747 5.22637 5.26428 5.37059 5.39095 5.60921 5.61411 5.66594 5.73409 5.94351 6.01308 6.09738 6.23156 6.70964 6.81939 6.93169 7.28600 7.35192 7.53890 7.82940 7.93798 8.21685 8.74320 8.90770 10.31768 10.68818 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.026571 B = 0.002545 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.528824 B =10998.073650 C =11236.771632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.300 6.300 3 C 0.148 3.852 4 C -0.254 4.254 5 C 0.134 3.866 6 N -0.477 5.477 7 C 0.165 3.835 8 C -0.044 4.044 9 S -0.022 6.022 10 C 0.046 3.954 11 N -0.287 5.287 12 N -0.333 5.333 13 C 0.347 3.653 14 C -0.447 4.447 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.737 5.737 18 Si 0.921 3.079 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.265 1.265 22 N -0.514 5.514 23 C 0.101 3.899 24 C 0.033 3.967 25 O -0.310 6.310 26 C 0.032 3.968 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.143 0.857 31 H 0.164 0.836 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.279 0.721 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.044 0.956 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.082 -4.405 -0.549 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.210 6.210 3 C 0.094 3.906 4 C -0.276 4.276 5 C -0.024 4.024 6 N -0.191 5.191 7 C 0.027 3.973 8 C -0.193 4.193 9 S 0.206 5.794 10 C -0.325 4.325 11 N -0.133 5.133 12 N -0.180 5.180 13 C 0.102 3.898 14 C -0.487 4.487 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.361 5.361 18 Si 0.744 3.256 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.190 1.190 22 N -0.216 5.216 23 C -0.044 4.044 24 C -0.016 4.016 25 O -0.225 6.225 26 C -0.062 4.062 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.182 0.818 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.845 -3.990 0.046 21.223 hybrid contribution 0.558 -0.509 -0.474 0.892 sum -20.287 -4.499 -0.428 20.784 Atomic orbital electron populations 1.23169 0.77979 1.04427 1.01614 1.86174 1.21603 1.25619 1.87641 1.19800 0.91618 0.85331 0.93854 1.22217 1.01572 0.92565 1.11258 1.22613 0.89821 0.97154 0.92788 1.67611 1.06825 1.30618 1.13999 1.20851 0.95422 0.86984 0.94055 1.22010 0.89934 1.08290 0.99027 1.84575 0.92567 1.94934 1.07346 1.25344 0.94539 1.22779 0.89887 1.74521 1.03732 1.15937 1.19093 1.75441 1.01153 1.29286 1.12135 1.21614 0.85956 0.94986 0.87255 1.18055 0.87118 1.49214 0.94350 0.89859 1.25790 1.00979 0.93381 0.94554 1.70004 1.32146 1.30434 1.03563 0.86183 0.80317 0.79724 0.79336 1.18984 1.20112 1.18989 1.46022 1.06029 1.63931 1.05663 1.21497 1.02297 1.01547 0.79032 1.18846 0.86639 0.88106 1.08057 1.86180 1.68121 1.39068 1.29105 1.23078 0.99580 0.99233 0.84341 0.87803 0.92383 0.92242 0.83938 0.81846 0.87394 0.86927 0.90968 0.92540 0.90347 0.91530 0.93097 0.93704 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.13 16 2 O -0.30 -3.29 10.35 -31.98 -0.33 -3.62 16 3 C 0.15 1.81 6.75 -38.74 -0.26 1.55 16 4 C -0.25 -2.45 9.11 -39.33 -0.36 -2.81 16 5 C 0.13 1.44 11.17 -17.57 -0.20 1.25 16 6 N -0.48 -6.96 10.27 -9.42 -0.10 -7.06 16 7 C 0.17 2.59 6.05 -82.46 -0.50 2.09 16 8 C -0.04 -0.79 5.29 36.01 0.19 -0.60 16 9 S -0.02 -0.44 21.77 -107.50 -2.34 -2.78 16 10 C 0.05 1.16 8.09 -87.28 -0.71 0.45 16 11 N -0.29 -8.05 11.62 30.89 0.36 -7.69 16 12 N -0.33 -10.18 10.48 31.26 0.33 -9.86 16 13 C 0.35 9.89 7.53 -154.81 -1.17 8.72 16 14 C -0.45 -12.03 9.04 -38.31 -0.35 -12.38 16 15 H 0.08 2.03 7.31 -52.49 -0.38 1.64 16 16 C 0.08 2.03 5.50 -17.29 -0.10 1.93 16 17 N -0.74 -20.51 11.94 55.56 0.66 -19.85 16 18 Si 0.92 18.76 29.56 -169.99 -5.03 13.74 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 N -0.51 -12.84 3.26 -123.17 -0.40 -13.24 16 23 C 0.10 1.93 10.87 59.85 0.65 2.58 16 24 C 0.03 0.48 5.73 -38.99 -0.22 0.26 16 25 O -0.31 -4.75 9.48 -32.52 -0.31 -5.06 16 26 C 0.03 0.39 10.76 101.05 1.09 1.48 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 29 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 30 H 0.14 0.86 6.46 -52.49 -0.34 0.53 16 31 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.11 1.99 6.31 -51.92 -0.33 1.66 16 33 H 0.11 2.14 8.14 -51.92 -0.42 1.72 16 34 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.39 7.54 -51.93 -0.39 1.00 16 37 H 0.07 1.13 7.84 -51.93 -0.41 0.72 16 38 H 0.05 0.62 7.26 -51.93 -0.38 0.25 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -35.90 360.99 -7.34 -43.24 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.70 Total: 1.09 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.93 Total: 5.66 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.85 Total: -57.70 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.64 Total: -8.69 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.34 Total: -2.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.90 -7.34 -43.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280025802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.500 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds