Wall clock time and date at job start Tue Mar 31 2020 04:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99557 * 2 1 4 4 H 1.08998 * 110.88433 * 327.57103 * 3 2 1 5 5 C 1.55402 * 110.91863 * 203.70091 * 3 2 1 6 6 C 1.54317 * 102.83159 * 277.25354 * 5 3 2 7 7 H 1.08999 * 109.88273 * 97.47638 * 6 5 3 8 8 C 1.53002 * 109.88173 * 218.48322 * 6 5 3 9 9 O 1.42900 * 109.47045 * 184.68491 * 8 6 5 10 10 N 1.47021 * 107.40237 * 337.97757 * 6 5 3 11 11 C 1.34780 * 125.64911 * 178.90088 * 10 6 5 12 12 O 1.21284 * 119.99905 * 359.97438 * 11 10 6 13 13 C 1.50694 * 120.00112 * 180.02562 * 11 10 6 14 14 C 1.50697 * 109.47512 * 179.97438 * 13 11 10 15 15 C 1.38324 * 119.96723 * 89.99211 * 14 13 11 16 16 C 1.38281 * 120.13742 * 180.02562 * 15 14 13 17 17 C 1.38119 * 120.06729 * 359.97438 * 16 15 14 18 18 C 1.38851 * 119.93587 * 0.02562 * 17 16 15 19 19 O 1.35749 * 120.07156 * 180.02562 * 18 17 16 20 20 C 1.34830 * 116.99942 * 354.46116 * 19 18 17 21 21 H 1.07999 * 119.99789 * 5.06278 * 20 19 18 22 22 C 1.38658 * 119.99986 * 185.06079 * 20 19 18 23 23 N 1.31560 * 120.00002 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99806 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46954 * 90.00078 * 24 22 20 26 26 H 1.48501 * 109.46907 * 209.99832 * 24 22 20 27 27 H 1.48493 * 109.47183 * 329.99901 * 24 22 20 28 28 C 1.38082 * 119.96347 * 269.72992 * 14 13 11 29 29 C 1.47423 * 108.70373 * 358.86331 * 10 6 5 30 30 H 1.08996 * 109.46988 * 60.00378 * 1 2 3 31 31 H 1.09001 * 109.46408 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47525 * 299.99860 * 1 2 3 33 33 H 1.09008 * 110.68890 * 158.96120 * 5 3 2 34 34 H 1.08997 * 110.85419 * 35.61937 * 5 3 2 35 35 H 1.09001 * 109.47041 * 64.68455 * 8 6 5 36 36 H 1.08998 * 109.47086 * 304.68467 * 8 6 5 37 37 H 0.96703 * 113.99613 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.47372 * 299.99827 * 13 11 10 39 39 H 1.09000 * 109.47460 * 59.99487 * 13 11 10 40 40 H 1.07997 * 119.93125 * 0.02868 * 15 14 13 41 41 H 1.07998 * 119.96012 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.03152 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99958 * 180.02562 * 23 22 20 44 44 H 1.07997 * 120.03117 * 359.97438 * 28 14 13 45 45 H 1.08999 * 110.36909 * 142.96440 * 29 10 6 46 46 H 1.08998 * 110.36769 * 265.29293 * 29 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3829 2.0101 -0.5461 5 6 3.4501 1.2719 -0.5835 6 6 4.3004 0.8331 0.6273 7 1 4.4857 -0.2400 0.5807 8 6 5.6297 1.5907 0.6315 9 8 6.4539 1.1005 1.6910 10 7 3.5367 1.1566 1.8412 11 6 3.9302 0.9086 3.1062 12 8 4.9985 0.3737 3.3151 13 6 3.0425 1.2950 4.2610 14 6 3.7085 0.9111 5.5571 15 6 4.5424 1.8095 6.1980 16 6 5.1558 1.4607 7.3873 17 6 4.9368 0.2136 7.9391 18 6 4.1003 -0.6905 7.2982 19 8 3.8828 -1.9168 7.8383 20 6 4.5968 -2.2375 8.9362 21 1 5.2423 -1.5026 9.3941 22 6 4.5023 -3.5106 9.4772 23 7 3.7155 -4.4056 8.9196 24 14 5.4910 -3.9547 10.9986 25 1 4.6939 -3.6487 12.2136 26 1 5.8165 -5.4033 10.9720 27 1 6.7484 -3.1650 11.0197 28 6 3.4814 -0.3352 6.1065 29 6 2.2695 1.7979 1.4457 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.7498 2.2622 -0.9267 34 1 3.5246 0.5438 -1.3912 35 1 5.4414 2.6540 0.7798 36 1 6.1362 1.4409 -0.3219 37 1 7.3145 1.5370 1.7538 38 1 2.8726 2.3716 4.2443 39 1 2.0881 0.7753 4.1754 40 1 4.7148 2.7854 5.7688 41 1 5.8060 2.1646 7.8854 42 1 5.4159 -0.0580 8.8681 43 1 3.6491 -5.2961 9.2983 44 1 2.8265 -1.0345 5.6080 45 1 1.4617 1.4806 2.1052 46 1 2.3715 2.8829 1.4643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284944791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:01 Heat of formation + Delta-G solvation = -115.271365 kcal Electronic energy + Delta-G solvation = -29158.049883 eV Core-core repulsion = 25014.304857 eV Total energy + Delta-G solvation = -4143.745027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40592 -39.01358 -38.18983 -37.00032 -36.19193 -35.62849 -32.38872 -32.07846 -31.17390 -29.96848 -29.04727 -27.02369 -26.77443 -25.38459 -25.11964 -22.73809 -21.62820 -21.40429 -20.52126 -18.92239 -17.59232 -17.36764 -17.31372 -16.80120 -16.78013 -15.77682 -15.68134 -15.29786 -15.00992 -14.80696 -14.48539 -14.32220 -14.07635 -13.81009 -13.50037 -13.40471 -13.23272 -12.89309 -12.78149 -12.44752 -12.28125 -12.08148 -11.96113 -11.83061 -11.68575 -11.42961 -11.27868 -11.18629 -11.14250 -10.73727 -10.63756 -10.48981 -10.35421 -10.08903 -9.89739 -9.31407 -9.20743 -8.72804 -8.46954 -7.92175 -7.08462 -6.33243 -3.92010 2.22704 2.52622 3.08486 3.08824 3.19940 3.21688 3.26150 3.32647 3.95771 4.06240 4.12075 4.37508 4.63326 4.73271 4.85785 4.94966 5.02469 5.08463 5.10664 5.12653 5.16107 5.21512 5.24758 5.30100 5.31886 5.37734 5.42256 5.43261 5.49779 5.63976 5.79949 5.87757 5.97099 6.06053 6.30016 6.40848 6.47538 6.79595 6.82518 7.05306 7.19336 7.41163 7.49475 7.56510 7.69133 7.77960 7.96640 8.12141 8.63954 9.12578 9.84815 10.85307 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.002693 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.027027 B =10396.644085 C =11058.576231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.073 3.927 4 H 0.085 0.915 5 C -0.120 4.120 6 C 0.142 3.858 7 H 0.083 0.917 8 C 0.065 3.935 9 O -0.532 6.532 10 N -0.618 5.618 11 C 0.522 3.478 12 O -0.473 6.473 13 C -0.088 4.088 14 C -0.030 4.030 15 C -0.194 4.194 16 C -0.075 4.075 17 C -0.232 4.232 18 C 0.156 3.844 19 O -0.181 6.181 20 C -0.389 4.389 21 H 0.091 0.909 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.173 4.173 29 C 0.077 3.923 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.365 0.635 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.268 0.732 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 16.490 -20.589 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.289 6.289 3 C 0.014 3.986 4 H 0.103 0.897 5 C -0.158 4.158 6 C 0.039 3.961 7 H 0.101 0.899 8 C -0.014 4.014 9 O -0.334 6.334 10 N -0.357 5.357 11 C 0.310 3.690 12 O -0.343 6.343 13 C -0.128 4.128 14 C -0.030 4.030 15 C -0.213 4.213 16 C -0.094 4.094 17 C -0.251 4.251 18 C 0.102 3.898 19 O -0.085 6.085 20 C -0.466 4.466 21 H 0.108 0.892 22 C -0.166 4.166 23 N -0.501 5.501 24 Si 0.765 3.235 25 H -0.200 1.200 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.193 4.193 29 C -0.047 4.047 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.210 0.790 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.131 0.869 45 H 0.099 0.901 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.338 15.152 -20.264 25.671 hybrid contribution 0.702 0.480 0.582 1.030 sum -3.637 15.632 -19.681 25.396 Atomic orbital electron populations 1.22840 0.80735 1.03238 0.99948 1.88011 1.19819 1.26407 1.94690 1.23323 0.94696 0.85701 0.94880 0.89703 1.22781 0.92645 1.03140 0.97239 1.21429 0.89919 1.00490 0.84293 0.89943 1.22540 0.91808 0.96534 0.90553 1.87041 1.30354 1.64048 1.51993 1.48471 1.19531 1.62578 1.05098 1.20335 0.87459 0.79497 0.81748 1.90844 1.21724 1.38846 1.82867 1.20563 0.98648 1.02381 0.91191 1.18672 0.97280 0.93742 0.93351 1.20312 1.03488 0.99392 0.98133 1.20656 0.97907 0.95552 0.95238 1.21153 1.05643 0.95058 1.03245 1.19258 0.92444 0.86469 0.91590 1.83976 1.57135 1.26527 1.40863 1.21310 1.24337 0.97977 1.02948 0.89178 1.25267 0.97459 0.94542 0.99318 1.70047 1.35899 1.04639 1.39497 0.85728 0.79424 0.78199 0.80156 1.19980 1.20326 1.19241 1.19943 1.06332 0.96741 0.96265 1.22811 0.87928 0.97419 0.96535 0.93971 0.89338 0.93761 0.89112 0.88770 0.94194 0.93570 0.78962 0.89060 0.88859 0.88116 0.87588 0.85692 0.92180 0.86933 0.90093 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.89 101.05 1.10 1.29 16 2 O -0.37 -3.63 10.51 -35.23 -0.37 -4.00 16 3 C 0.07 0.53 3.49 -24.45 -0.09 0.44 16 4 H 0.09 0.38 7.90 -51.93 -0.41 -0.03 16 5 C -0.12 -0.85 6.23 -24.77 -0.15 -1.01 16 6 C 0.14 1.64 3.29 -66.96 -0.22 1.42 16 7 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 8 C 0.07 0.69 6.47 37.16 0.24 0.93 16 9 O -0.53 -7.77 10.35 -59.32 -0.61 -8.39 16 10 N -0.62 -7.93 3.07 -163.02 -0.50 -8.43 16 11 C 0.52 8.80 7.58 -10.99 -0.08 8.71 16 12 O -0.47 -10.23 13.32 -18.54 -0.25 -10.48 16 13 C -0.09 -1.34 4.83 -29.04 -0.14 -1.48 16 14 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 15 C -0.19 -3.75 9.70 -39.53 -0.38 -4.13 16 16 C -0.08 -1.53 10.04 -39.61 -0.40 -1.92 16 17 C -0.23 -5.49 9.17 -39.40 -0.36 -5.85 16 18 C 0.16 4.09 6.65 -39.11 -0.26 3.83 16 19 O -0.18 -5.51 9.76 0.05 0.00 -5.51 16 20 C -0.39 -11.49 9.49 30.89 0.29 -11.20 16 21 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.87 -26.51 13.67 55.48 0.76 -25.75 16 24 Si 0.94 21.51 29.55 -169.99 -5.02 16.48 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 28 C -0.17 -4.07 9.64 -39.39 -0.38 -4.45 16 29 C 0.08 0.66 6.43 -2.53 -0.02 0.64 16 30 H 0.04 0.20 8.11 -51.93 -0.42 -0.22 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.26 8.13 -51.93 -0.42 -0.16 16 33 H 0.09 0.42 7.85 -51.92 -0.41 0.02 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.37 3.78 9.12 45.56 0.42 4.20 16 38 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 39 H 0.09 1.28 7.79 -51.93 -0.40 0.87 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 42 H 0.13 2.93 5.64 -52.48 -0.30 2.63 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.11 2.59 8.06 -52.49 -0.42 2.17 16 45 H 0.08 0.68 7.46 -51.93 -0.39 0.29 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -38.97 381.94 -7.61 -46.58 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.97 Total: 6.56 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.40 Total: -12.82 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.26 Total: -34.18 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.23 Total: -28.37 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.97 -7.61 -46.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284944791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.691 kcal (2) G-P(sol) polarization free energy of solvation -38.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds