Wall clock time and date at job start Tue Mar 31 2020 05:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00447 * 2 1 4 4 S 1.65602 * 119.99670 * 180.02562 * 2 1 3 5 5 O 1.42106 * 106.40135 * 339.91066 * 4 2 1 6 6 O 1.42096 * 106.40563 * 206.98533 * 4 2 1 7 7 N 1.65609 * 107.21604 * 93.44836 * 4 2 1 8 8 C 1.36943 * 119.99563 * 243.39194 * 7 4 2 9 9 H 1.07993 * 119.99995 * 316.93448 * 8 7 4 10 10 C 1.38812 * 119.99554 * 136.93915 * 8 7 4 11 11 N 1.31612 * 120.00203 * 355.09704 * 10 8 7 12 12 Si 1.86800 * 119.99885 * 175.09130 * 10 8 7 13 13 H 1.48502 * 109.47048 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46894 * 119.99835 * 12 10 8 15 15 H 1.48500 * 109.47202 * 240.00366 * 12 10 8 16 16 C 1.46496 * 119.99886 * 63.39268 * 7 4 2 17 17 C 1.50697 * 109.47123 * 67.41372 * 16 7 4 18 18 C 1.38210 * 119.99458 * 236.20485 * 17 16 7 19 19 C 1.38436 * 119.98588 * 179.79112 * 18 17 16 20 20 F 1.35105 * 120.00788 * 180.25936 * 19 18 17 21 21 C 1.38472 * 119.97745 * 0.49043 * 19 18 17 22 22 C 1.38171 * 119.98606 * 359.74100 * 21 19 18 23 23 C 1.38332 * 119.99455 * 56.48773 * 17 16 7 24 24 Cl 1.73609 * 119.98637 * 359.97438 * 23 17 16 25 25 H 1.09005 * 109.46979 * 270.00414 * 1 2 3 26 26 H 1.09001 * 109.47275 * 29.99440 * 1 2 3 27 27 H 1.08994 * 109.47693 * 149.99949 * 1 2 3 28 28 H 1.09004 * 109.46640 * 239.66005 * 3 2 1 29 29 H 1.09005 * 109.46942 * 359.65653 * 3 2 1 30 30 H 1.09000 * 109.46882 * 119.65869 * 3 2 1 31 31 H 0.97002 * 120.00186 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.46896 * 187.41283 * 16 7 4 33 33 H 1.09003 * 109.47007 * 307.41242 * 16 7 4 34 34 H 1.08004 * 120.00628 * 0.02562 * 18 17 16 35 35 H 1.07996 * 120.00646 * 179.72490 * 21 19 18 36 36 H 1.07997 * 119.99187 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2929 -1.4342 -0.0006 5 8 1.3847 -2.4220 0.4672 6 8 3.5455 -1.1748 0.6180 7 7 2.6204 -1.8104 -1.5798 8 6 2.0845 -2.9394 -2.1400 9 1 2.0740 -3.8652 -1.5841 10 6 1.5549 -2.8936 -3.4223 11 7 1.4797 -1.7462 -4.0626 12 14 0.9492 -4.4605 -4.2391 13 1 1.1428 -5.6070 -3.3153 14 1 -0.4937 -4.3242 -4.5624 15 1 1.7165 -4.6960 -5.4885 16 6 3.4832 -0.9356 -2.3775 17 6 4.8900 -0.9920 -1.8401 18 6 5.5280 0.1705 -1.4507 19 6 6.8188 0.1180 -0.9530 20 9 7.4410 1.2535 -0.5674 21 6 7.4736 -1.0982 -0.8552 22 6 6.8365 -2.2592 -1.2492 23 6 5.5447 -2.2067 -1.7421 24 17 4.7450 -3.6658 -2.2377 25 1 -0.3633 0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3634 -0.8899 -0.5138 28 1 2.8288 1.3236 -0.8870 29 1 1.4893 2.0972 -0.0062 30 1 2.8196 1.3290 0.8930 31 1 1.1093 -1.7142 -4.9586 32 1 3.4772 -1.2678 -3.4156 33 1 3.1137 0.0884 -2.3215 34 1 5.0183 1.1193 -1.5311 35 1 8.4822 -1.1391 -0.4712 36 1 7.3470 -3.2078 -1.1725 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289822138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:17 Heat of formation + Delta-G solvation = -82.953668 kcal Electronic energy + Delta-G solvation = -26521.220426 eV Core-core repulsion = 22494.477511 eV Total energy + Delta-G solvation = -4026.742915 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 336.050 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.59023 -38.87228 -35.94208 -35.73289 -35.49533 -35.25420 -34.50943 -32.13025 -30.64124 -29.63450 -27.50704 -26.09886 -24.05847 -23.65038 -22.43345 -21.18949 -18.56011 -17.44049 -17.23819 -16.44856 -16.32012 -16.03190 -15.70268 -15.33531 -15.21381 -14.74465 -13.99460 -13.95146 -13.74026 -13.30495 -13.17691 -12.98626 -12.58807 -12.39991 -12.28497 -12.03533 -11.76254 -11.56429 -11.45495 -11.23395 -11.01850 -10.85466 -10.74454 -10.69750 -10.62815 -10.58209 -10.50840 -10.13642 -9.78046 -9.00213 -8.55509 -8.32183 -7.96669 -7.88523 -6.48442 -4.11831 1.45323 1.52492 1.88131 2.91865 3.12421 3.20849 3.25509 3.82948 4.01107 4.19005 4.55033 4.79064 4.86103 5.06817 5.10534 5.41627 5.47890 5.49797 5.65779 5.83477 5.99029 5.99658 6.08733 6.12802 6.17201 6.24637 6.31590 6.39379 6.45024 6.58790 6.74381 6.95588 7.15197 7.27599 7.33876 7.55609 8.33472 8.79066 9.24734 10.54979 Molecular weight = 336.05amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.007394 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.757554 B = 3786.028655 C = 5172.749526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -1.022 6.022 3 C 0.098 3.902 4 S 2.685 3.315 5 O -0.998 6.998 6 O -1.002 7.002 7 N -0.824 5.824 8 C -0.241 4.241 9 H 0.094 0.906 10 C 0.045 3.955 11 N -0.851 5.851 12 Si 0.907 3.093 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.278 1.278 16 C 0.175 3.825 17 C -0.051 4.051 18 C -0.130 4.130 19 C 0.094 3.906 20 F -0.146 7.146 21 C -0.154 4.154 22 C -0.092 4.092 23 C -0.027 4.027 24 Cl -0.034 7.034 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.271 0.729 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 4.072 0.558 6.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.858 5.858 3 C -0.049 4.049 4 S 2.707 3.293 5 O -0.981 6.981 6 O -0.986 6.986 7 N -0.652 5.652 8 C -0.383 4.383 9 H 0.111 0.889 10 C -0.165 4.165 11 N -0.491 5.491 12 Si 0.733 3.267 13 H -0.189 1.189 14 H -0.203 1.203 15 H -0.204 1.204 16 C 0.047 3.953 17 C -0.055 4.055 18 C -0.150 4.150 19 C 0.075 3.925 20 F -0.125 7.125 21 C -0.174 4.174 22 C -0.111 4.111 23 C -0.054 4.054 24 Cl -0.004 7.004 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.078 0.922 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.321 3.678 1.349 6.607 hybrid contribution -0.464 -0.194 -0.626 0.803 sum 4.857 3.484 0.723 6.020 Atomic orbital electron populations 1.21234 0.80112 1.02558 1.00037 1.58598 1.14364 1.22362 1.90440 1.21383 0.96176 0.86568 1.00767 1.07307 0.73029 0.72263 0.76703 1.93410 1.64776 1.58922 1.81041 1.93476 1.43147 1.85402 1.76591 1.53171 1.52453 1.29575 1.30014 1.19271 1.33032 0.87056 0.98979 0.88889 1.25594 0.95033 0.97525 0.98326 1.69854 1.41367 1.24559 1.13338 0.86138 0.78854 0.82317 0.79399 1.18869 1.20329 1.20391 1.20159 0.81736 0.93846 0.99543 1.20580 0.98250 0.90741 0.95900 1.20838 0.93542 0.99155 1.01468 1.17596 0.92050 0.81965 1.00897 1.91454 1.82546 1.49345 1.89112 1.20852 1.00921 0.91031 1.04565 1.20824 0.93360 0.98332 0.98617 1.20908 0.93221 0.89634 1.01661 1.98434 1.78311 1.34559 1.89144 0.94477 0.92489 0.90908 0.93170 0.91817 0.92893 0.91866 0.85526 0.92227 0.84774 0.84924 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.87 10.27 59.85 0.61 2.49 16 2 N -1.02 -19.86 3.64 -129.20 -0.47 -20.33 16 3 C 0.10 1.57 10.33 59.85 0.62 2.18 16 4 S 2.69 61.96 5.86 -107.50 -0.63 61.33 16 5 O -1.00 -26.01 16.06 -57.17 -0.92 -26.93 16 6 O -1.00 -23.93 15.54 -57.17 -0.89 -24.82 16 7 N -0.82 -18.66 2.34 -61.09 -0.14 -18.80 16 8 C -0.24 -5.78 5.69 -15.06 -0.09 -5.86 16 9 H 0.09 2.34 7.65 -52.49 -0.40 1.94 16 10 C 0.04 1.04 5.12 -17.43 -0.09 0.95 16 11 N -0.85 -19.85 11.31 55.49 0.63 -19.22 16 12 Si 0.91 18.89 29.56 -169.99 -5.02 13.87 16 13 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 16 C 0.17 3.57 4.66 -5.20 -0.02 3.54 16 17 C -0.05 -0.99 3.83 -104.60 -0.40 -1.39 16 18 C -0.13 -2.25 9.57 -39.52 -0.38 -2.63 16 19 C 0.09 1.56 7.30 -39.42 -0.29 1.27 16 20 F -0.15 -2.31 17.27 2.25 0.04 -2.27 16 21 C -0.15 -2.35 10.03 -39.52 -0.40 -2.75 16 22 C -0.09 -1.49 9.83 -39.56 -0.39 -1.88 16 23 C -0.03 -0.50 6.24 -39.50 -0.25 -0.75 16 24 Cl -0.03 -0.66 24.37 -51.86 -1.26 -1.93 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.84 7.92 -51.93 -0.41 0.43 16 27 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 28 H 0.05 0.77 5.91 -51.93 -0.31 0.46 16 29 H 0.06 0.84 7.79 -51.93 -0.40 0.43 16 30 H 0.05 0.85 8.00 -51.93 -0.42 0.43 16 31 H 0.27 6.03 8.31 -40.82 -0.34 5.69 16 32 H 0.13 2.77 6.04 -51.93 -0.31 2.45 16 33 H 0.06 1.14 6.04 -51.93 -0.31 0.83 16 34 H 0.13 2.03 7.54 -52.48 -0.40 1.63 16 35 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -28.26 327.31 -8.57 -36.83 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -3.77 Total: 2.16 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.07 Total: -4.81 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.01 Total: -58.36 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -1.81 Total: -51.75 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: 61.96 SS G_CDS: -0.63 Total: 61.33 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.26 Total: -1.93 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.26 -8.57 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289822138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.125 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds