Wall clock time and date at job start Tue Mar 31 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47439 * 347.53509 * 3 2 1 5 5 N 1.46498 * 109.47249 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00154 * 89.99916 * 5 4 3 7 7 C 1.50700 * 109.46920 * 90.00061 * 6 5 4 8 8 H 1.07992 * 120.00481 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99728 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99878 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00030 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46983 * 89.99997 * 11 9 7 13 13 H 1.48498 * 109.47208 * 210.00029 * 11 9 7 14 14 H 1.48501 * 109.47194 * 329.99875 * 11 9 7 15 15 C 1.34776 * 119.99821 * 269.71848 * 5 4 3 16 16 O 1.21275 * 120.00165 * 179.97438 * 15 5 4 17 17 C 1.50702 * 119.99829 * 0.02562 * 15 5 4 18 18 N 1.46899 * 109.47107 * 179.97438 * 17 15 5 19 19 C 1.46470 * 110.99755 * 297.60784 * 18 17 15 20 20 C 1.53250 * 109.86082 * 162.23676 * 19 18 17 21 21 S 1.81898 * 108.50665 * 62.00222 * 20 19 18 22 22 C 1.81894 * 101.91464 * 308.69788 * 21 20 19 23 23 C 1.46471 * 111.00373 * 171.63310 * 18 17 15 24 24 H 1.08999 * 109.40607 * 77.71834 * 23 18 17 25 25 C 1.53009 * 109.40117 * 317.88230 * 23 18 17 26 26 C 1.53004 * 117.49506 * 253.73701 * 25 23 18 27 27 C 1.52995 * 117.49714 * 185.11792 * 25 23 18 28 28 H 1.09005 * 109.47061 * 227.53369 * 3 2 1 29 29 H 1.08998 * 109.46957 * 107.53180 * 3 2 1 30 30 H 1.08997 * 109.47283 * 59.99593 * 4 3 2 31 31 H 1.09005 * 109.46913 * 300.00442 * 4 3 2 32 32 H 1.08998 * 109.46658 * 210.00032 * 6 5 4 33 33 H 1.08994 * 109.47006 * 330.00004 * 6 5 4 34 34 H 0.96999 * 120.00167 * 180.02562 * 10 9 7 35 35 H 1.09007 * 109.47191 * 299.99284 * 17 15 5 36 36 H 1.08996 * 109.47649 * 59.99621 * 17 15 5 37 37 H 1.08999 * 109.40954 * 282.35262 * 19 18 17 38 38 H 1.09000 * 109.40714 * 42.11966 * 19 18 17 39 39 H 1.09004 * 109.62815 * 302.29941 * 20 19 18 40 40 H 1.09002 * 109.79370 * 181.80415 * 20 19 18 41 41 H 1.09007 * 109.63207 * 291.59576 * 22 21 20 42 42 H 1.09001 * 109.63467 * 171.01185 * 22 21 20 43 43 H 1.08998 * 115.54679 * 39.44055 * 25 23 18 44 44 H 1.09000 * 117.50074 * 0.02562 * 26 25 23 45 45 H 1.09001 * 117.49716 * 145.02071 * 26 25 23 46 46 H 1.09005 * 117.49715 * 214.97845 * 27 25 23 47 47 H 1.09005 * 117.50150 * 359.96834 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4076 0.3113 5 7 4.5837 -1.4067 0.3119 6 6 5.3156 -1.1326 1.5511 7 6 5.5672 -2.4260 2.2824 8 1 5.2167 -3.3588 1.8661 9 6 6.2450 -2.4185 3.4831 10 7 6.6724 -1.2826 3.9898 11 14 6.5563 -4.0216 4.3900 12 1 7.8512 -4.5976 3.9468 13 1 6.6041 -3.7623 5.8514 14 1 5.4609 -4.9792 4.0928 15 6 5.2581 -1.6637 -0.8263 16 8 6.4709 -1.6626 -0.8260 17 6 4.5052 -1.9513 -2.0997 18 7 5.4603 -2.1965 -3.1885 19 6 6.2825 -1.0112 -3.4423 20 6 7.5311 -1.4045 -4.2391 21 16 7.0032 -2.0805 -5.8432 22 6 5.7816 -3.3308 -5.3401 23 6 4.7739 -2.6722 -4.3918 24 1 4.3010 -1.8295 -4.8961 25 6 3.7050 -3.6933 -3.9970 26 6 3.9893 -5.1661 -4.2989 27 6 2.9536 -4.4017 -5.1259 28 1 2.9710 0.6947 0.7581 29 1 2.9712 0.3104 -0.9799 30 1 2.7557 -2.1016 -0.4467 31 1 2.7554 -1.7174 1.2913 32 1 6.2678 -0.6585 1.3132 33 1 4.7259 -0.4674 2.1817 34 1 7.1495 -1.2772 4.8343 35 1 3.8787 -2.8324 -1.9603 36 1 3.8785 -1.0961 -2.3523 37 1 5.7037 -0.2841 -4.0119 38 1 6.5834 -0.5689 -2.4926 39 1 8.0927 -2.1603 -3.6901 40 1 8.1579 -0.5273 -4.3998 41 1 6.2859 -4.1499 -4.8273 42 1 5.2624 -3.7104 -6.2201 43 1 3.1485 -3.4638 -3.0883 44 1 4.9379 -5.4076 -4.7783 45 1 3.6197 -5.9059 -3.5887 46 1 1.9026 -4.6386 -4.9598 47 1 3.2203 -4.1400 -6.1498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328600558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:14 Heat of formation + Delta-G solvation = 43.135440 kcal Electronic energy + Delta-G solvation = -27846.737399 eV Core-core repulsion = 24157.595550 eV Total energy + Delta-G solvation = -3689.141849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.14079 -38.72994 -36.98266 -36.20900 -35.16782 -32.95389 -31.29188 -30.96129 -30.81932 -27.82316 -25.75702 -24.97959 -24.06672 -22.82171 -22.52494 -21.83406 -19.51937 -18.54418 -17.74344 -17.52456 -16.58607 -16.50000 -15.93935 -15.84913 -15.24558 -14.91101 -14.75328 -14.67452 -14.43383 -14.14442 -13.96821 -13.68699 -13.54744 -13.19161 -12.86902 -12.54272 -12.47654 -12.39115 -12.18052 -12.02231 -11.85788 -11.74768 -11.71143 -11.46353 -11.31346 -11.03747 -10.91211 -10.77383 -10.65637 -10.47584 -10.31518 -10.21426 -9.78500 -9.68467 -9.01797 -8.49887 -8.34879 -7.88050 -7.75630 -6.11815 -4.16289 1.72876 2.44454 2.66870 2.75354 3.18862 3.26924 3.27900 3.34598 3.37146 3.59387 3.85405 4.15583 4.33155 4.39852 4.62636 4.69362 4.78170 4.83077 4.88790 4.99470 5.02219 5.09291 5.13417 5.16817 5.23781 5.24543 5.29922 5.39089 5.43587 5.44630 5.50507 5.69584 5.73262 5.76045 5.89651 5.91304 5.96349 5.99428 6.00936 6.72285 6.95517 7.01768 7.30671 7.38616 7.51609 7.84323 8.13648 8.20346 8.80361 8.94717 9.49524 10.96291 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009110 B = 0.003822 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.973439 B = 7323.744513 C = 8542.311612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.216 3.784 3 C -0.050 4.050 4 C 0.118 3.882 5 N -0.597 5.597 6 C 0.247 3.753 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.508 3.492 16 O -0.514 6.514 17 C 0.030 3.970 18 N -0.525 5.525 19 C 0.052 3.948 20 C -0.064 4.064 21 S -0.290 6.290 22 C -0.068 4.068 23 C 0.121 3.879 24 H 0.058 0.942 25 C -0.159 4.159 26 C -0.173 4.173 27 C -0.177 4.177 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.838 -0.890 -17.338 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.330 5.330 6 C 0.128 3.872 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.294 3.706 16 O -0.389 6.389 17 C -0.100 4.100 18 N -0.250 5.250 19 C -0.077 4.077 20 C -0.212 4.212 21 S -0.063 6.063 22 C -0.216 4.216 23 C 0.011 3.989 24 H 0.076 0.924 25 C -0.179 4.179 26 C -0.210 4.210 27 C -0.215 4.215 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.134 0.866 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.059 -0.867 -18.072 19.080 hybrid contribution -0.312 -0.621 1.597 1.742 sum -6.371 -1.488 -16.475 17.726 Atomic orbital electron populations 1.81215 1.13027 1.08628 1.09256 1.29098 0.95097 0.93146 0.92862 1.19899 0.81378 1.02184 1.05716 1.21292 0.82388 0.93061 1.04155 1.48228 1.04722 1.69054 1.10966 1.19336 0.92543 0.96814 0.78523 1.21401 1.36738 0.93454 1.05081 0.92393 1.24903 0.95286 0.96439 0.97258 1.69915 1.38224 1.25235 1.19891 0.86529 0.78827 0.83571 0.78690 1.20537 1.21193 1.19937 1.20157 0.88263 0.77839 0.84352 1.90656 1.13559 1.49865 1.84864 1.22248 0.94657 1.02185 0.90910 1.60698 1.23639 1.34844 1.05829 1.22418 0.92943 0.90372 1.01967 1.23479 1.00182 1.04079 0.93469 1.86795 1.54155 1.48940 1.16385 1.23666 0.97373 0.98967 1.01640 1.21245 0.91589 0.95988 0.90092 0.92410 1.22598 1.00685 0.94101 1.00528 1.23080 1.00598 0.94046 1.03236 1.22996 0.97779 1.04483 0.96230 0.86408 0.87775 0.90909 0.88659 0.93585 0.94767 0.92670 0.87222 0.92445 0.94297 0.86901 0.88481 0.87665 0.88518 0.87796 0.86567 0.88134 0.88634 0.88605 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.26 18.54 42.15 0.78 -5.48 16 2 C 0.22 2.46 15.43 -20.76 -0.32 2.14 16 3 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 4 C 0.12 1.45 5.17 -4.04 -0.02 1.43 16 5 N -0.60 -10.20 2.46 -175.07 -0.43 -10.63 16 6 C 0.25 5.59 5.16 -5.19 -0.03 5.56 16 7 C -0.53 -13.73 9.39 -34.44 -0.32 -14.05 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 11 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.51 8.67 7.21 -10.98 -0.08 8.59 16 16 O -0.51 -11.03 13.77 5.56 0.08 -10.96 16 17 C 0.03 0.37 3.52 -4.98 -0.02 0.36 16 18 N -0.53 -6.64 4.12 -228.46 -0.94 -7.58 16 19 C 0.05 0.66 4.94 -3.93 -0.02 0.64 16 20 C -0.06 -0.78 6.69 37.29 0.25 -0.53 16 21 S -0.29 -3.42 22.40 -107.50 -2.41 -5.83 16 22 C -0.07 -0.69 4.58 37.28 0.17 -0.52 16 23 C 0.12 1.24 2.31 -67.81 -0.16 1.09 16 24 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 25 C -0.16 -1.45 5.25 -90.62 -0.48 -1.93 16 26 C -0.17 -1.49 9.66 -26.73 -0.26 -1.74 16 27 C -0.18 -1.33 9.86 -26.73 -0.26 -1.60 16 28 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.10 0.80 7.25 -51.93 -0.38 0.42 16 30 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 31 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.05 1.20 7.43 -51.93 -0.39 0.81 16 33 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 35 H 0.11 1.23 4.51 -51.93 -0.23 0.99 16 36 H 0.06 0.57 7.22 -51.93 -0.37 0.19 16 37 H 0.04 0.45 7.91 -51.93 -0.41 0.04 16 38 H 0.11 1.70 5.44 -51.93 -0.28 1.42 16 39 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.07 6.89 -51.92 -0.36 0.71 16 42 H 0.10 0.90 6.84 -51.93 -0.36 0.54 16 43 H 0.12 1.05 5.44 -51.93 -0.28 0.77 16 44 H 0.10 0.86 5.93 -51.93 -0.31 0.55 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.65 7.25 -51.93 -0.38 0.27 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -31.47 385.52 -10.20 -41.67 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.99 Total: 0.99 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.82 Total: 0.38 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.15 Total: -48.02 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.41 Total: -5.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.47 -10.20 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328600558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.801 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds