Wall clock time and date at job start Tue Mar 31 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47137 * 284.57020 * 3 2 1 5 5 N 1.46494 * 109.47499 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00175 * 270.00110 * 5 4 3 7 7 C 1.50703 * 109.47090 * 89.99512 * 6 5 4 8 8 H 1.08005 * 120.00052 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00182 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99481 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00221 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46767 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47135 * 119.99769 * 11 9 7 14 14 H 1.48501 * 109.46606 * 239.99655 * 11 9 7 15 15 C 1.34780 * 119.99798 * 89.99624 * 5 4 3 16 16 O 1.21289 * 119.99856 * 180.02562 * 15 5 4 17 17 C 1.50693 * 120.00201 * 0.02562 * 15 5 4 18 18 N 1.46906 * 109.47286 * 174.68930 * 17 15 5 19 19 C 1.46462 * 111.00040 * 299.52299 * 18 17 15 20 20 C 1.53251 * 109.86281 * 197.76150 * 19 18 17 21 21 S 1.81894 * 108.50446 * 298.00013 * 20 19 18 22 22 C 1.81903 * 101.91800 * 51.30104 * 21 20 19 23 23 C 1.46473 * 110.99646 * 65.50180 * 18 17 15 24 24 H 1.08998 * 109.40595 * 282.35531 * 23 18 17 25 25 C 1.52996 * 109.40733 * 42.19207 * 23 18 17 26 26 C 1.52997 * 117.50236 * 248.74603 * 25 23 18 27 27 C 1.53004 * 117.49880 * 180.08583 * 25 23 18 28 28 H 1.09000 * 109.46870 * 44.56951 * 3 2 1 29 29 H 1.09001 * 109.47016 * 164.57313 * 3 2 1 30 30 H 1.09003 * 109.46874 * 300.00163 * 4 3 2 31 31 H 1.08997 * 109.47450 * 59.99738 * 4 3 2 32 32 H 1.08995 * 109.47282 * 209.99521 * 6 5 4 33 33 H 1.09001 * 109.46888 * 330.00323 * 6 5 4 34 34 H 0.97009 * 119.99745 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47394 * 294.69233 * 17 15 5 36 36 H 1.09004 * 109.47302 * 54.69262 * 17 15 5 37 37 H 1.08994 * 109.40907 * 317.88434 * 19 18 17 38 38 H 1.09002 * 109.40846 * 77.64325 * 19 18 17 39 39 H 1.08996 * 109.63240 * 178.28986 * 20 19 18 40 40 H 1.09005 * 109.78911 * 57.79338 * 20 19 18 41 41 H 1.09002 * 109.63250 * 188.99068 * 22 21 20 42 42 H 1.08992 * 109.79032 * 68.49435 * 22 21 20 43 43 H 1.09008 * 115.54991 * 34.41896 * 25 23 18 44 44 H 1.08997 * 117.49824 * 0.02562 * 26 25 23 45 45 H 1.09003 * 117.49572 * 145.02098 * 26 25 23 46 46 H 1.09004 * 117.49436 * 214.98607 * 27 25 23 47 47 H 1.08999 * 117.49553 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.3620 1.3961 5 7 4.5831 -0.3608 1.3964 6 6 5.3168 -1.5880 1.0771 7 6 5.5681 -1.6512 -0.4075 8 1 5.2169 -0.8565 -1.0490 9 6 6.2465 -2.7236 -0.9468 10 7 6.6745 -3.6911 -0.1656 11 14 6.5587 -2.8016 -2.7869 12 1 5.9806 -1.5989 -3.4384 13 1 8.0213 -2.8471 -3.0393 14 1 5.9217 -4.0212 -3.3456 15 6 5.2560 0.7695 1.6902 16 8 6.4689 0.7706 1.6900 17 6 4.5014 2.0318 2.0191 18 7 5.4500 3.0781 2.4234 19 6 6.2058 2.6713 3.6102 20 6 6.8441 3.8997 4.2674 21 16 8.0068 4.6480 3.0856 22 6 6.9749 4.8131 1.5967 23 6 6.3186 3.4588 1.3072 24 1 7.0922 2.7022 1.1759 25 6 5.4863 3.5622 0.0276 26 6 5.7280 2.5128 -1.0591 27 6 6.2158 3.9497 -1.2603 28 1 2.9716 -0.7313 -0.7212 29 1 2.9709 0.9915 -0.2734 30 1 2.7545 0.3700 2.1173 31 1 2.7553 -1.3527 1.6696 32 1 6.2691 -1.5904 1.6073 33 1 4.7283 -2.4531 1.3830 34 1 7.1521 -4.4454 -0.5449 35 1 3.9474 2.3632 1.1408 36 1 3.8057 1.8370 2.8353 37 1 5.5337 2.1890 4.3199 38 1 6.9872 1.9693 3.3189 39 1 7.3802 3.5969 5.1668 40 1 6.0709 4.6226 4.5279 41 1 7.5965 5.1070 0.7510 42 1 6.2040 5.5654 1.7635 43 1 4.4671 3.9264 0.1578 44 1 6.4797 1.7484 -0.8624 45 1 4.8680 2.1868 -1.6441 46 1 5.6764 4.5685 -1.9775 47 1 7.2886 4.1313 -1.1958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328600559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:17 Heat of formation + Delta-G solvation = 32.230896 kcal Electronic energy + Delta-G solvation = -28776.240426 eV Core-core repulsion = 25086.625721 eV Total energy + Delta-G solvation = -3689.614705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.30647 -38.16882 -36.83200 -36.01056 -35.11652 -32.92870 -31.21591 -31.00992 -30.81635 -27.82087 -25.68163 -24.39667 -23.91998 -22.74826 -22.11959 -21.67303 -20.01138 -18.50879 -17.64443 -16.86865 -16.75233 -16.32771 -16.11307 -15.61591 -15.17246 -14.81793 -14.65068 -14.46974 -14.26309 -13.96703 -13.85011 -13.59461 -13.38575 -13.10025 -12.67020 -12.44207 -12.38330 -12.35389 -12.05219 -11.96687 -11.78619 -11.69600 -11.35801 -11.25952 -11.23401 -10.96625 -10.86943 -10.67920 -10.63473 -10.26206 -10.20651 -10.10260 -9.81066 -9.64361 -9.51268 -8.53944 -8.02875 -7.90522 -7.60329 -6.15275 -4.20350 1.83126 2.54741 2.76951 2.87709 3.20159 3.22313 3.31837 3.32499 3.62341 3.69280 3.92263 4.22013 4.35866 4.73079 4.84131 4.89396 4.97346 5.05387 5.09403 5.12115 5.19590 5.21393 5.24076 5.26406 5.36427 5.41004 5.42045 5.52852 5.56025 5.65427 5.71385 5.77460 5.87803 5.99693 6.10255 6.15828 6.17249 6.34836 6.44652 6.78842 6.94147 7.05919 7.31160 7.36634 7.63429 7.79914 8.09779 8.18740 8.75640 8.90185 9.45600 10.92909 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.004484 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.618774 B = 6243.468650 C = 7119.461011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.218 3.782 3 C -0.052 4.052 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.244 3.756 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.482 3.518 16 O -0.530 6.530 17 C 0.031 3.969 18 N -0.522 5.522 19 C 0.042 3.958 20 C -0.070 4.070 21 S -0.281 6.281 22 C -0.062 4.062 23 C 0.107 3.893 24 H 0.092 0.908 25 C -0.153 4.153 26 C -0.168 4.168 27 C -0.177 4.177 28 H 0.130 0.870 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 14.408 4.536 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.100 4.100 3 C -0.094 4.094 4 C -0.005 4.005 5 N -0.326 5.326 6 C 0.125 3.875 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.719 3.281 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.267 3.733 16 O -0.407 6.407 17 C -0.100 4.100 18 N -0.246 5.246 19 C -0.087 4.087 20 C -0.218 4.218 21 S -0.054 6.054 22 C -0.210 4.210 23 C -0.003 4.003 24 H 0.110 0.890 25 C -0.173 4.173 26 C -0.205 4.205 27 C -0.215 4.215 28 H 0.148 0.852 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.830 14.941 4.869 16.174 hybrid contribution -0.271 -1.227 -1.556 2.000 sum -4.101 13.714 3.313 14.693 Atomic orbital electron populations 1.81192 1.13114 1.09615 1.08934 1.29270 0.95227 0.92589 0.92912 1.19983 0.80811 1.06111 1.02461 1.21272 0.82198 1.03195 0.93800 1.48339 1.04790 1.12526 1.66987 1.19352 0.92540 0.79232 0.96385 1.21407 1.36732 1.05967 0.92303 0.92056 1.24915 0.95364 0.95593 0.98011 1.69929 1.38079 1.09993 1.35017 0.86544 0.78204 0.77946 0.85356 1.19646 1.20959 1.21060 1.21491 0.88696 0.85271 0.77804 1.90636 1.13714 1.84126 1.52239 1.22424 0.95709 0.88903 1.02949 1.61630 1.19653 1.37740 1.05531 1.22403 0.98751 0.95784 0.91736 1.23466 0.99710 0.99906 0.98761 1.86851 1.24053 1.82484 1.11968 1.23516 1.00442 1.00262 0.96809 1.21542 0.94864 0.95629 0.88244 0.89024 1.22278 0.99981 1.05728 0.89339 1.23171 1.04023 0.92350 1.00975 1.22927 1.00462 0.99165 0.98927 0.85186 0.87859 0.90913 0.89499 0.93788 0.95019 0.92723 0.87572 0.88611 0.90382 0.89992 0.87835 0.89540 0.87850 0.89536 0.87497 0.87385 0.88903 0.88971 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.72 18.54 42.15 0.78 -5.94 16 2 C 0.22 2.72 15.43 -20.76 -0.32 2.40 16 3 C -0.05 -0.59 6.03 -29.52 -0.18 -0.77 16 4 C 0.12 1.48 5.24 -4.04 -0.02 1.46 16 5 N -0.59 -9.79 2.46 -175.06 -0.43 -10.22 16 6 C 0.24 5.40 5.20 -5.19 -0.03 5.37 16 7 C -0.53 -12.65 8.92 -34.44 -0.31 -12.96 16 8 H 0.06 1.42 7.42 -52.48 -0.39 1.03 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 11 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 C 0.48 7.75 6.45 -10.99 -0.07 7.68 16 16 O -0.53 -10.66 11.61 5.55 0.06 -10.60 16 17 C 0.03 0.37 4.04 -4.98 -0.02 0.35 16 18 N -0.52 -6.43 4.50 -228.48 -1.03 -7.46 16 19 C 0.04 0.54 4.71 -3.93 -0.02 0.52 16 20 C -0.07 -0.78 6.69 37.29 0.25 -0.53 16 21 S -0.28 -3.66 22.39 -107.50 -2.41 -6.06 16 22 C -0.06 -0.73 5.82 37.29 0.22 -0.51 16 23 C 0.11 1.38 1.51 -67.82 -0.10 1.28 16 24 H 0.09 1.55 5.75 -51.93 -0.30 1.25 16 25 C -0.15 -1.77 3.45 -90.62 -0.31 -2.08 16 26 C -0.17 -2.23 9.61 -26.70 -0.26 -2.49 16 27 C -0.18 -1.96 9.71 -26.69 -0.26 -2.22 16 28 H 0.13 1.72 7.27 -51.93 -0.38 1.34 16 29 H 0.10 1.01 7.38 -51.93 -0.38 0.63 16 30 H 0.07 0.68 6.29 -51.93 -0.33 0.36 16 31 H 0.09 1.06 7.89 -51.93 -0.41 0.65 16 32 H 0.04 1.15 7.42 -51.93 -0.39 0.76 16 33 H 0.03 0.73 7.89 -51.93 -0.41 0.32 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.11 1.12 5.21 -51.93 -0.27 0.85 16 36 H 0.10 0.96 7.03 -51.93 -0.37 0.59 16 37 H 0.08 0.89 7.90 -51.93 -0.41 0.48 16 38 H 0.08 1.33 5.98 -51.93 -0.31 1.02 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.15 7.21 -51.93 -0.37 0.77 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.11 1.12 7.34 -51.92 -0.38 0.74 16 44 H 0.11 1.85 8.05 -51.93 -0.42 1.43 16 45 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -29.45 384.56 -10.19 -39.64 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.15 Total: 4.53 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.52 Total: -0.95 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.06 Total: -47.47 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.06 Total: -10.60 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.41 Total: -6.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.45 -10.19 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328600559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.866 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds