Wall clock time and date at job start Tue Mar 31 2020 04:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 110.27104 * 2 1 4 4 C 1.54350 * 110.30112 * 237.82720 * 2 1 3 5 5 C 1.54344 * 102.38940 * 214.72880 * 4 2 1 6 6 H 1.09005 * 110.39135 * 145.31300 * 5 4 2 7 7 N 1.46507 * 110.30196 * 267.42058 * 5 4 2 8 8 C 1.34777 * 120.00076 * 202.20049 * 7 5 4 9 9 O 1.21593 * 120.00042 * 0.02562 * 8 7 5 10 10 C 1.47632 * 120.00098 * 179.97438 * 8 7 5 11 11 C 1.40014 * 119.89816 * 0.24711 * 10 8 7 12 12 C 1.36315 * 120.11281 * 180.25301 * 11 10 8 13 13 C 1.40890 * 119.88990 * 359.50236 * 12 11 10 14 14 C 1.41106 * 120.10742 * 180.22911 * 13 12 11 15 15 H 1.08002 * 119.99996 * 154.56762 * 14 13 12 16 16 C 1.40227 * 119.99652 * 334.57455 * 14 13 12 17 17 N 1.30638 * 119.99979 * 343.00606 * 16 14 13 18 18 Si 1.86804 * 119.99921 * 163.01022 * 16 14 13 19 19 H 1.48500 * 109.47133 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47141 * 119.99584 * 18 16 14 21 21 H 1.48496 * 109.46868 * 239.99718 * 18 16 14 22 22 C 1.40896 * 119.79033 * 0.25055 * 13 12 11 23 23 C 1.36312 * 119.89390 * 0.02562 * 22 13 12 24 24 C 1.51367 * 105.17289 * 26.34404 * 5 4 2 25 25 C 1.38502 * 130.39345 * 162.80973 * 24 5 4 26 26 C 1.38097 * 120.21715 * 179.97438 * 25 24 5 27 27 C 1.38254 * 119.93509 * 0.03029 * 26 25 24 28 28 C 1.38102 * 119.93228 * 359.97438 * 27 26 25 29 29 C 1.38217 * 109.76059 * 342.81305 * 24 5 4 30 30 H 1.09001 * 109.46716 * 299.37155 * 1 2 3 31 31 H 1.08997 * 109.47351 * 59.37802 * 1 2 3 32 32 H 1.09000 * 109.46942 * 179.37942 * 1 2 3 33 33 H 1.08993 * 109.47323 * 180.62248 * 3 2 1 34 34 H 1.08999 * 109.46893 * 300.63019 * 3 2 1 35 35 H 1.09000 * 109.46904 * 60.62400 * 3 2 1 36 36 H 1.08997 * 110.82419 * 96.50388 * 4 2 1 37 37 H 1.08999 * 110.82187 * 332.94695 * 4 2 1 38 38 H 0.96999 * 119.99549 * 22.20318 * 7 5 4 39 39 H 1.08005 * 119.94508 * 0.02562 * 11 10 8 40 40 H 1.07994 * 120.06108 * 179.77517 * 12 11 10 41 41 H 0.97008 * 120.00118 * 180.02562 * 17 16 14 42 42 H 1.08002 * 120.05149 * 180.02562 * 22 13 12 43 43 H 1.07996 * 119.95239 * 180.02562 * 23 22 13 44 44 H 1.08007 * 119.89100 * 0.02562 * 25 24 5 45 45 H 1.07999 * 120.03708 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.03416 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.89204 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0655 -0.7708 -1.2253 5 6 3.3424 -1.4342 -0.6671 6 1 3.4917 -2.4134 -1.1221 7 7 4.5071 -0.5791 -0.9094 8 6 5.7441 -1.1140 -0.9258 9 8 5.8934 -2.3063 -0.7398 10 6 6.9177 -0.2524 -1.1705 11 6 6.7437 1.1209 -1.3803 12 6 7.8238 1.9196 -1.6119 13 6 9.1178 1.3629 -1.6294 14 6 10.2395 2.1862 -1.8639 15 1 11.2102 1.8959 -1.4897 16 6 10.0939 3.3815 -2.5826 17 7 9.0282 3.5795 -3.3118 18 14 11.4238 4.6905 -2.4974 19 1 12.5193 4.2261 -1.6089 20 1 11.9619 4.9389 -3.8590 21 1 10.8472 5.9474 -1.9561 22 6 9.2884 -0.0188 -1.4126 23 6 8.2018 -0.8104 -1.1875 24 6 3.0967 -1.5780 0.8196 25 6 3.7338 -2.3675 1.7624 26 6 3.3324 -2.3333 3.0833 27 6 2.2908 -1.5090 3.4667 28 6 1.6541 -0.7211 2.5280 29 6 2.0553 -0.7539 1.2029 30 1 -0.3633 0.5041 0.8956 31 1 -0.3634 0.5234 -0.8843 32 1 -0.3633 -1.0276 -0.0111 33 1 3.1499 1.4201 -0.0112 34 1 1.6948 1.9575 -0.8843 35 1 1.7131 1.9507 0.8955 36 1 2.3082 -0.0862 -2.0380 37 1 1.3490 -1.5242 -1.5527 38 1 4.3879 0.3719 -1.0581 39 1 5.7516 1.5476 -1.3624 40 1 7.6882 2.9782 -1.7772 41 1 8.9276 4.4062 -3.8092 42 1 10.2786 -0.4500 -1.4248 43 1 8.3315 -1.8695 -1.0208 44 1 4.5479 -3.0114 1.4638 45 1 3.8310 -2.9504 3.8160 46 1 1.9752 -1.4813 4.4992 47 1 0.8402 -0.0777 2.8281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332235549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:57 Heat of formation + Delta-G solvation = -7.280702 kcal Electronic energy + Delta-G solvation = -28226.822179 eV Core-core repulsion = 24530.901993 eV Total energy + Delta-G solvation = -3695.920186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.163 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.83292 -38.76494 -37.12459 -36.58313 -34.01206 -33.86655 -31.47960 -30.06129 -29.90189 -29.44775 -28.42535 -27.43847 -25.92512 -23.83081 -22.66976 -22.10224 -21.05017 -20.57720 -19.72590 -19.23237 -17.53647 -17.04277 -16.23705 -15.70636 -15.41811 -15.18549 -15.06655 -14.25833 -14.06837 -14.02299 -13.91358 -13.61785 -13.59614 -13.18229 -12.87443 -12.77091 -12.62919 -12.35275 -12.16530 -12.06957 -11.93567 -11.82913 -11.56579 -11.36778 -11.28567 -11.18531 -11.10079 -10.93593 -10.66041 -10.54778 -10.52563 -10.03560 -9.56872 -9.36909 -9.06252 -8.72647 -8.63278 -8.50050 -7.72627 -7.53876 -7.03472 -4.60798 1.38350 1.47924 2.22751 2.90124 2.94782 3.00315 3.03100 3.64597 3.73859 3.86120 4.04620 4.30192 4.37776 4.57987 4.81806 4.92552 4.99751 5.08428 5.14281 5.19165 5.42991 5.50099 5.52669 5.57169 5.61406 5.65038 5.75848 5.81285 5.85065 5.91249 5.98922 6.02847 6.06088 6.15785 6.20737 6.24215 6.31371 6.51793 6.60519 6.76142 6.78162 6.82478 6.94860 7.05495 7.08472 7.12923 7.43337 7.64912 7.78582 7.85743 8.06837 8.24556 8.39671 8.62894 8.74810 9.08595 9.88657 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.002808 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.813458 B = 9970.797753 C =10587.308659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 C -0.139 4.139 4 C -0.121 4.121 5 C 0.186 3.814 6 H 0.092 0.908 7 N -0.729 5.729 8 C 0.574 3.426 9 O -0.573 6.573 10 C -0.283 4.283 11 C -0.063 4.063 12 C -0.177 4.177 13 C 0.129 3.871 14 C -0.443 4.443 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.773 5.773 18 Si 0.913 3.087 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.238 4.238 23 C -0.022 4.022 24 C -0.101 4.101 25 C -0.084 4.084 26 C -0.126 4.126 27 C -0.119 4.119 28 C -0.112 4.112 29 C -0.079 4.079 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.396 0.604 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.159 -2.036 6.031 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.158 4.158 5 C 0.080 3.920 6 H 0.110 0.890 7 N -0.382 5.382 8 C 0.369 3.631 9 O -0.455 6.455 10 C -0.287 4.287 11 C -0.082 4.082 12 C -0.196 4.196 13 C 0.126 3.874 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.396 5.396 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.258 4.258 23 C -0.041 4.041 24 C -0.102 4.102 25 C -0.103 4.103 26 C -0.144 4.144 27 C -0.137 4.137 28 C -0.130 4.130 29 C -0.080 4.080 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.233 0.767 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.159 -2.700 5.959 16.510 hybrid contribution 0.517 1.133 -0.014 1.245 sum -14.642 -1.568 5.945 15.880 Atomic orbital electron populations 1.21826 0.93692 1.01945 1.01857 1.20114 0.95619 0.95088 0.91841 1.21898 1.01516 0.94093 1.02107 1.22740 0.96114 0.99860 0.97122 1.20127 0.85670 0.95792 0.90362 0.88988 1.46050 1.05452 1.11475 1.75261 1.18601 0.82705 0.87428 0.74413 1.90613 1.86177 1.16357 1.52314 1.18903 0.92126 0.93522 1.24173 1.20460 0.97044 0.92641 0.98067 1.20963 0.92123 0.99602 1.06895 1.17789 0.93059 0.90915 0.85656 1.19874 0.96237 1.02582 1.28401 0.89708 1.26090 0.96750 0.98957 0.92886 1.69746 1.26658 1.25090 1.18129 0.86175 0.81032 0.79916 0.79247 1.18076 1.19673 1.19401 1.20727 0.96933 0.93820 1.14309 1.20354 0.91528 0.97974 0.94234 1.20917 0.96041 0.96857 0.96424 1.20848 0.98835 0.98309 0.92276 1.21060 0.97711 0.99822 0.95854 1.20999 0.96686 0.97055 0.98991 1.20502 1.00504 1.00105 0.91891 1.20460 0.96685 0.96899 0.93911 0.92530 0.92241 0.92430 0.92152 0.91897 0.92289 0.89565 0.89607 0.76695 0.89535 0.86238 0.90320 0.88403 0.88128 0.85620 0.86129 0.86238 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.31 37.16 0.31 -0.84 16 2 C -0.03 -0.28 0.89 -154.62 -0.14 -0.42 16 3 C -0.14 -1.44 8.46 37.16 0.31 -1.13 16 4 C -0.12 -1.33 5.69 -25.32 -0.14 -1.47 16 5 C 0.19 2.72 3.17 -68.05 -0.22 2.51 16 6 H 0.09 1.47 7.64 -51.93 -0.40 1.08 16 7 N -0.73 -12.30 4.95 -54.93 -0.27 -12.57 16 8 C 0.57 12.11 7.75 -12.43 -0.10 12.01 16 9 O -0.57 -13.28 15.84 5.28 0.08 -13.20 16 10 C -0.28 -6.46 5.89 -104.73 -0.62 -7.08 16 11 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 12 C -0.18 -4.32 8.63 -39.27 -0.34 -4.66 16 13 C 0.13 3.28 5.57 -106.80 -0.59 2.69 16 14 C -0.44 -11.03 9.05 -37.75 -0.34 -11.37 16 15 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 16 C 0.07 1.73 5.15 -17.31 -0.09 1.64 16 17 N -0.77 -18.44 10.95 55.56 0.61 -17.83 16 18 Si 0.91 17.25 29.59 -169.99 -5.03 12.22 16 19 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 22 C -0.24 -5.78 9.73 -39.27 -0.38 -6.17 16 23 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 24 C -0.10 -1.49 5.76 -104.21 -0.60 -2.09 16 25 C -0.08 -1.28 10.04 -39.54 -0.40 -1.68 16 26 C -0.13 -1.63 10.05 -39.63 -0.40 -2.03 16 27 C -0.12 -1.37 10.05 -39.63 -0.40 -1.77 16 28 C -0.11 -1.30 9.76 -39.54 -0.39 -1.69 16 29 C -0.08 -1.00 4.92 -104.21 -0.51 -1.51 16 30 H 0.06 0.45 7.92 -51.93 -0.41 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.06 0.72 6.31 -51.93 -0.33 0.40 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.89 7.80 -51.93 -0.41 0.49 16 37 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 38 H 0.40 6.13 4.87 -40.82 -0.20 5.93 16 39 H 0.09 1.64 6.37 -52.48 -0.33 1.31 16 40 H 0.12 2.96 6.18 -52.49 -0.32 2.64 16 41 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 42 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 43 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 44 H 0.13 2.09 7.87 -52.48 -0.41 1.68 16 45 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 46 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 47 H 0.12 1.09 7.87 -52.49 -0.41 0.68 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -28.26 381.78 -11.18 -39.43 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -6.54 Total: 13.90 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -5.78 Total: -27.70 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.34 Total: -30.40 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.26 -11.18 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332235549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.154 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds