Wall clock time and date at job start Tue Mar 31 2020 04:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 110.27104 * 2 1 4 4 C 1.54350 * 110.30112 * 237.82720 * 2 1 3 5 5 C 1.54344 * 102.38940 * 214.72880 * 4 2 1 6 6 H 1.09005 * 110.39135 * 145.31300 * 5 4 2 7 7 N 1.46507 * 110.30196 * 267.42058 * 5 4 2 8 8 C 1.34777 * 120.00076 * 202.20049 * 7 5 4 9 9 O 1.21593 * 120.00042 * 0.02562 * 8 7 5 10 10 C 1.47632 * 120.00098 * 179.97438 * 8 7 5 11 11 C 1.40014 * 119.89816 * 0.24711 * 10 8 7 12 12 C 1.36315 * 120.11281 * 180.25301 * 11 10 8 13 13 C 1.40890 * 119.88990 * 359.50236 * 12 11 10 14 14 C 1.41106 * 120.10742 * 180.22911 * 13 12 11 15 15 H 1.08002 * 119.99996 * 154.56762 * 14 13 12 16 16 C 1.40227 * 119.99652 * 334.57455 * 14 13 12 17 17 N 1.30638 * 119.99979 * 343.00606 * 16 14 13 18 18 Si 1.86804 * 119.99921 * 163.01022 * 16 14 13 19 19 H 1.48500 * 109.47133 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47141 * 119.99584 * 18 16 14 21 21 H 1.48496 * 109.46868 * 239.99718 * 18 16 14 22 22 C 1.40896 * 119.79033 * 0.25055 * 13 12 11 23 23 C 1.36312 * 119.89390 * 0.02562 * 22 13 12 24 24 C 1.51367 * 105.17289 * 26.34404 * 5 4 2 25 25 C 1.38502 * 130.39345 * 162.80973 * 24 5 4 26 26 C 1.38097 * 120.21715 * 179.97438 * 25 24 5 27 27 C 1.38254 * 119.93509 * 0.03029 * 26 25 24 28 28 C 1.38102 * 119.93228 * 359.97438 * 27 26 25 29 29 C 1.38217 * 109.76059 * 342.81305 * 24 5 4 30 30 H 1.09001 * 109.46716 * 299.37155 * 1 2 3 31 31 H 1.08997 * 109.47351 * 59.37802 * 1 2 3 32 32 H 1.09000 * 109.46942 * 179.37942 * 1 2 3 33 33 H 1.08993 * 109.47323 * 180.62248 * 3 2 1 34 34 H 1.08999 * 109.46893 * 300.63019 * 3 2 1 35 35 H 1.09000 * 109.46904 * 60.62400 * 3 2 1 36 36 H 1.08997 * 110.82419 * 96.50388 * 4 2 1 37 37 H 1.08999 * 110.82187 * 332.94695 * 4 2 1 38 38 H 0.96999 * 119.99549 * 22.20318 * 7 5 4 39 39 H 1.08005 * 119.94508 * 0.02562 * 11 10 8 40 40 H 1.07994 * 120.06108 * 179.77517 * 12 11 10 41 41 H 0.97008 * 120.00118 * 180.02562 * 17 16 14 42 42 H 1.08002 * 120.05149 * 180.02562 * 22 13 12 43 43 H 1.07996 * 119.95239 * 180.02562 * 23 22 13 44 44 H 1.08007 * 119.89100 * 0.02562 * 25 24 5 45 45 H 1.07999 * 120.03708 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.03416 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.89204 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0655 -0.7708 -1.2253 5 6 3.3424 -1.4342 -0.6671 6 1 3.4917 -2.4134 -1.1221 7 7 4.5071 -0.5791 -0.9094 8 6 5.7441 -1.1140 -0.9258 9 8 5.8934 -2.3063 -0.7398 10 6 6.9177 -0.2524 -1.1705 11 6 6.7437 1.1209 -1.3803 12 6 7.8238 1.9196 -1.6119 13 6 9.1178 1.3629 -1.6294 14 6 10.2395 2.1862 -1.8639 15 1 11.2102 1.8959 -1.4897 16 6 10.0939 3.3815 -2.5826 17 7 9.0282 3.5795 -3.3118 18 14 11.4238 4.6905 -2.4974 19 1 12.5193 4.2261 -1.6089 20 1 11.9619 4.9389 -3.8590 21 1 10.8472 5.9474 -1.9561 22 6 9.2884 -0.0188 -1.4126 23 6 8.2018 -0.8104 -1.1875 24 6 3.0967 -1.5780 0.8196 25 6 3.7338 -2.3675 1.7624 26 6 3.3324 -2.3333 3.0833 27 6 2.2908 -1.5090 3.4667 28 6 1.6541 -0.7211 2.5280 29 6 2.0553 -0.7539 1.2029 30 1 -0.3633 0.5041 0.8956 31 1 -0.3634 0.5234 -0.8843 32 1 -0.3633 -1.0276 -0.0111 33 1 3.1499 1.4201 -0.0112 34 1 1.6948 1.9575 -0.8843 35 1 1.7131 1.9507 0.8955 36 1 2.3082 -0.0862 -2.0380 37 1 1.3490 -1.5242 -1.5527 38 1 4.3879 0.3719 -1.0581 39 1 5.7516 1.5476 -1.3624 40 1 7.6882 2.9782 -1.7772 41 1 8.9276 4.4062 -3.8092 42 1 10.2786 -0.4500 -1.4248 43 1 8.3315 -1.8695 -1.0208 44 1 4.5479 -3.0114 1.4638 45 1 3.8310 -2.9504 3.8160 46 1 1.9752 -1.4813 4.4992 47 1 0.8402 -0.0777 2.8281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332235549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:55 Heat of formation + Delta-G solvation = -19.420409 kcal Electronic energy + Delta-G solvation = -28227.348596 eV Core-core repulsion = 24530.901993 eV Total energy + Delta-G solvation = -3696.446603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.163 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.90883 -40.37506 -38.84958 -37.61744 -35.67327 -35.31396 -32.82208 -31.60640 -31.30863 -30.91233 -29.50330 -28.15757 -27.64970 -24.94424 -23.73184 -23.61729 -22.82347 -21.87672 -21.26083 -20.19252 -19.37904 -18.55502 -17.58391 -17.19509 -16.72619 -16.29519 -16.07650 -15.76655 -15.55656 -15.48953 -15.15625 -14.81461 -14.71808 -14.46121 -14.43323 -13.95067 -13.91990 -13.66914 -13.57335 -13.26551 -13.17378 -12.92277 -12.85902 -12.69712 -12.63737 -12.45886 -12.38491 -12.12832 -11.91615 -11.75553 -11.46829 -11.43417 -11.37906 -11.13921 -10.73005 -10.10300 -9.75334 -9.59535 -9.54181 -9.41231 -8.79554 -6.49431 0.36353 0.44122 0.46990 1.13006 1.38401 1.41834 1.55065 2.11866 2.17787 2.37316 2.77646 2.92530 3.35184 3.48116 3.68139 3.94719 3.98393 4.08176 4.15770 4.21673 4.24829 4.29341 4.38228 4.42638 4.55112 4.61780 4.66713 4.82425 4.84754 4.89949 4.94348 4.99320 5.01976 5.03661 5.09069 5.14062 5.16073 5.25304 5.28332 5.32267 5.42373 5.55735 5.56917 5.61030 5.63477 5.76142 5.80966 5.92968 5.98021 6.10151 6.21307 6.52679 6.69734 6.76179 6.87510 7.44402 8.16007 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.002808 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.813458 B = 9970.797753 C =10587.308659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.022 4.022 3 C -0.140 4.140 4 C -0.113 4.113 5 C 0.180 3.820 6 H 0.069 0.931 7 N -0.712 5.712 8 C 0.572 3.428 9 O -0.600 6.600 10 C -0.293 4.293 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.103 3.897 14 C -0.474 4.474 15 H 0.084 0.916 16 C 0.038 3.962 17 N -0.798 5.798 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.263 1.263 21 H -0.259 1.259 22 C -0.253 4.253 23 C -0.033 4.033 24 C -0.128 4.128 25 C -0.113 4.113 26 C -0.135 4.135 27 C -0.114 4.114 28 C -0.113 4.113 29 C -0.078 4.078 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.405 0.595 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.297 0.703 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.135 0.865 46 H 0.152 0.848 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 0.120 6.637 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 C -0.197 4.197 4 C -0.151 4.151 5 C 0.075 3.925 6 H 0.087 0.913 7 N -0.364 5.364 8 C 0.366 3.634 9 O -0.484 6.484 10 C -0.297 4.297 11 C -0.073 4.073 12 C -0.214 4.214 13 C 0.099 3.901 14 C -0.501 4.501 15 H 0.102 0.898 16 C -0.181 4.181 17 N -0.421 5.421 18 Si 0.808 3.192 19 H -0.182 1.182 20 H -0.188 1.188 21 H -0.184 1.184 22 C -0.272 4.272 23 C -0.052 4.052 24 C -0.129 4.129 25 C -0.132 4.132 26 C -0.153 4.153 27 C -0.132 4.132 28 C -0.130 4.130 29 C -0.078 4.078 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.243 0.757 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.153 0.847 46 H 0.169 0.831 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.590 -0.543 6.562 18.782 hybrid contribution 1.181 0.382 -0.166 1.252 sum -16.409 -0.161 6.396 17.612 Atomic orbital electron populations 1.21801 0.91490 1.02411 1.03160 1.20138 0.97228 0.94645 0.90235 1.21924 1.00144 0.94166 1.03458 1.22789 0.94243 1.00336 0.97696 1.20346 0.86183 0.94814 0.91129 0.91252 1.45914 1.04864 1.12095 1.73536 1.18433 0.83691 0.86811 0.74504 1.90598 1.86778 1.17401 1.53662 1.19201 0.92648 0.94243 1.23655 1.20688 0.98095 0.92110 0.96410 1.20994 0.92501 0.99587 1.08305 1.18130 0.94025 0.91480 0.86425 1.20128 0.96166 1.04119 1.29685 0.89768 1.26916 0.99109 1.00302 0.91771 1.69758 1.28130 1.26117 1.18138 0.85064 0.77859 0.76899 0.79424 1.18165 1.18795 1.18364 1.20863 0.97463 0.93878 1.15028 1.20489 0.92130 0.98057 0.94516 1.20969 0.97563 0.98281 0.96125 1.20846 0.99142 0.99254 0.93981 1.21281 0.98452 1.00525 0.95051 1.21395 0.95454 0.95718 1.00643 1.20902 1.00846 0.99953 0.91327 1.20767 0.95701 0.96176 0.95203 0.91485 0.90744 0.92405 0.94259 0.90094 0.91479 0.88561 0.87880 0.75722 0.86286 0.86756 0.89162 0.87838 0.88109 0.88646 0.84741 0.83073 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.31 71.98 0.60 -1.10 16 2 C -0.02 -0.41 0.89 -52.26 -0.05 -0.46 16 3 C -0.14 -2.49 8.46 71.98 0.61 -1.88 16 4 C -0.11 -2.28 5.69 31.51 0.18 -2.10 16 5 C 0.18 5.30 3.17 44.91 0.14 5.44 16 6 H 0.07 2.33 7.64 -2.38 -0.02 2.32 16 7 N -0.71 -24.17 4.95 -445.95 -2.21 -26.38 16 8 C 0.57 24.89 7.75 86.72 0.67 25.56 16 9 O -0.60 -29.23 15.84 -4.01 -0.06 -29.29 16 10 C -0.29 -13.75 5.89 -19.93 -0.12 -13.86 16 11 C -0.05 -2.42 9.47 22.25 0.21 -2.21 16 12 C -0.19 -9.70 8.63 22.47 0.19 -9.51 16 13 C 0.10 5.39 5.57 -21.28 -0.12 5.27 16 14 C -0.47 -24.11 9.05 23.46 0.21 -23.90 16 15 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 16 C 0.04 1.76 5.15 85.35 0.44 2.20 16 17 N -0.80 -38.04 10.95 21.87 0.24 -37.80 16 18 Si 0.99 34.82 29.59 68.60 2.03 36.85 16 19 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 20 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 21 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 22 C -0.25 -12.79 9.73 22.47 0.22 -12.58 16 23 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 24 C -0.13 -3.80 5.76 -19.59 -0.11 -3.91 16 25 C -0.11 -3.61 10.04 22.30 0.22 -3.39 16 26 C -0.14 -3.44 10.05 22.24 0.22 -3.21 16 27 C -0.11 -2.35 10.05 22.24 0.22 -2.13 16 28 C -0.11 -2.28 9.76 22.30 0.22 -2.06 16 29 C -0.08 -1.82 4.92 -19.60 -0.10 -1.91 16 30 H 0.07 0.75 7.92 -2.39 -0.02 0.73 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.04 0.86 6.31 -2.39 -0.02 0.84 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.76 7.80 -2.39 -0.02 1.74 16 37 H 0.10 1.74 7.90 -2.39 -0.02 1.72 16 38 H 0.40 12.21 4.87 -92.71 -0.45 11.76 16 39 H 0.12 4.40 6.37 -2.91 -0.02 4.38 16 40 H 0.11 5.75 6.18 -2.91 -0.02 5.73 16 41 H 0.30 12.50 8.29 -92.70 -0.77 11.73 16 42 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 43 H 0.10 4.85 7.63 -2.91 -0.02 4.83 16 44 H 0.10 3.51 7.87 -2.91 -0.02 3.49 16 45 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 46 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 47 H 0.14 2.07 7.87 -2.91 -0.02 2.05 16 Total: -1.00 -63.89 381.78 4.62 -59.27 By element: Atomic # 1 Polarization: 43.94 SS G_CDS: 0.54 Total: 44.47 kcal Atomic # 6 Polarization: -51.21 SS G_CDS: 4.09 Total: -47.13 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -1.97 Total: -64.17 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.06 Total: -29.29 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Total: -63.89 4.62 -59.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332235549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.847 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds