Wall clock time and date at job start Tue Mar 31 2020 05:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 110.34798 * 2 1 4 4 C 1.54349 * 110.30375 * 122.12901 * 2 1 3 5 5 C 1.54353 * 102.39200 * 145.26761 * 4 2 1 6 6 H 1.08995 * 110.30202 * 214.73005 * 5 4 2 7 7 N 1.46494 * 110.29931 * 92.57809 * 5 4 2 8 8 C 1.34776 * 119.99759 * 157.79973 * 7 5 4 9 9 O 1.21581 * 120.00084 * 0.02562 * 8 7 5 10 10 C 1.47640 * 119.99854 * 179.97438 * 8 7 5 11 11 C 1.40010 * 119.89729 * 359.72706 * 10 8 7 12 12 C 1.36318 * 120.10634 * 179.71920 * 11 10 8 13 13 C 1.40893 * 119.89326 * 0.54999 * 12 11 10 14 14 C 1.41104 * 120.10402 * 179.74174 * 13 12 11 15 15 H 1.08003 * 120.00143 * 204.62023 * 14 13 12 16 16 C 1.40229 * 120.00082 * 24.62343 * 14 13 12 17 17 N 1.30646 * 119.99906 * 17.89724 * 16 14 13 18 18 Si 1.86802 * 119.99944 * 197.89575 * 16 14 13 19 19 H 1.48497 * 109.46987 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47010 * 120.00000 * 18 16 14 21 21 H 1.48495 * 109.46860 * 239.99976 * 18 16 14 22 22 C 1.40886 * 119.78944 * 359.72320 * 13 12 11 23 23 C 1.36315 * 119.89371 * 0.02562 * 22 13 12 24 24 C 1.51367 * 105.17126 * 333.65665 * 5 4 2 25 25 C 1.38498 * 130.39064 * 197.16995 * 24 5 4 26 26 C 1.38100 * 120.21463 * 180.02562 * 25 24 5 27 27 C 1.38260 * 119.93398 * 0.28799 * 26 25 24 28 28 C 1.38102 * 119.93517 * 359.44951 * 27 26 25 29 29 C 1.38225 * 109.75965 * 17.18141 * 24 5 4 30 30 H 1.09000 * 109.46880 * 297.86970 * 1 2 3 31 31 H 1.08993 * 109.47322 * 57.87209 * 1 2 3 32 32 H 1.09002 * 109.47521 * 177.87296 * 1 2 3 33 33 H 1.08996 * 109.47210 * 182.12402 * 3 2 1 34 34 H 1.08999 * 109.47481 * 302.13159 * 3 2 1 35 35 H 1.09000 * 109.46884 * 62.12891 * 3 2 1 36 36 H 1.09005 * 110.82136 * 27.04368 * 4 2 1 37 37 H 1.08997 * 110.82339 * 263.49941 * 4 2 1 38 38 H 0.97001 * 120.00259 * 337.79975 * 7 5 4 39 39 H 1.07999 * 119.94749 * 359.97438 * 11 10 8 40 40 H 1.08000 * 120.05689 * 180.28213 * 12 11 10 41 41 H 0.96998 * 119.99390 * 180.02562 * 17 16 14 42 42 H 1.08006 * 120.05092 * 179.97438 * 22 13 12 43 43 H 1.08002 * 119.94364 * 180.02562 * 23 22 13 44 44 H 1.07994 * 119.89215 * 0.02562 * 25 24 5 45 45 H 1.07996 * 120.03220 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.03234 * 179.70995 * 27 26 25 47 47 H 1.08001 * 119.88928 * 180.27735 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4345 0.0000 4 6 2.0656 -0.7699 1.2259 5 6 3.3425 -1.4338 0.6681 6 1 3.4899 -2.4127 1.1243 7 7 4.5071 -0.5786 0.9097 8 6 5.7440 -1.1135 0.9264 9 8 5.8934 -2.3057 0.7405 10 6 6.9178 -0.2515 1.1694 11 6 6.7439 1.1222 1.3764 12 6 7.8241 1.9212 1.6068 13 6 9.1182 1.3643 1.6248 14 6 10.2400 2.1881 1.8574 15 1 11.2128 1.8908 1.4947 16 6 10.0916 3.3928 2.5596 17 7 9.0289 3.5954 3.2920 18 14 11.4136 4.7079 2.4478 19 1 12.5071 4.2363 1.5607 20 1 10.8268 5.9535 1.8917 21 1 11.9579 4.9790 3.8025 22 6 9.2886 -0.0176 1.4102 23 6 8.2019 -0.8094 1.1857 24 6 3.0966 -1.5787 -0.8184 25 6 3.7340 -2.3687 -1.7607 26 6 3.3324 -2.3356 -3.0816 27 6 2.2948 -1.5070 -3.4667 28 6 1.6544 -0.7226 -2.5276 29 6 2.0551 -0.7550 -1.2023 30 1 -0.3633 0.4804 0.9085 31 1 -0.3633 0.5465 -0.8702 32 1 -0.3634 -1.0270 -0.0381 33 1 3.1511 1.4181 -0.0381 34 1 1.6759 1.9653 -0.8702 35 1 1.7378 1.9422 0.9085 36 1 1.3489 -1.5229 1.5539 37 1 2.3082 -0.0846 2.0381 38 1 4.3879 0.3726 1.0577 39 1 5.7519 1.5490 1.3577 40 1 7.6886 2.9800 1.7709 41 1 8.9262 4.4289 3.7774 42 1 10.2788 -0.4489 1.4227 43 1 8.3315 -1.8689 1.0216 44 1 4.5476 -3.0127 -1.4615 45 1 3.8312 -2.9532 -3.8138 46 1 1.9825 -1.4763 -4.5001 47 1 0.8410 -0.0789 -2.8284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332235567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:00 Heat of formation + Delta-G solvation = -7.403926 kcal Electronic energy + Delta-G solvation = -28228.681569 eV Core-core repulsion = 24532.756040 eV Total energy + Delta-G solvation = -3695.925529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.163 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.83080 -38.76264 -37.12355 -36.58223 -34.01003 -33.87314 -31.47638 -30.06207 -29.90152 -29.44404 -28.42347 -27.44014 -25.92630 -23.82853 -22.66950 -22.10120 -21.04768 -20.57565 -19.72126 -19.23247 -17.53910 -17.03944 -16.23394 -15.70728 -15.41887 -15.18451 -15.06703 -14.25402 -14.07063 -14.02158 -13.90887 -13.61159 -13.60093 -13.18455 -12.87354 -12.77366 -12.63577 -12.34459 -12.16861 -12.07328 -11.93690 -11.82682 -11.56846 -11.36008 -11.28421 -11.18245 -11.09591 -10.93806 -10.66365 -10.54976 -10.52099 -10.04279 -9.57264 -9.35647 -9.05989 -8.72566 -8.63061 -8.49831 -7.72609 -7.54619 -7.04472 -4.60709 1.38466 1.48075 2.23035 2.89885 2.94557 3.00134 3.03350 3.64811 3.73500 3.86015 4.04939 4.30165 4.37793 4.57679 4.81987 4.92595 5.00034 5.08656 5.14458 5.19382 5.42975 5.50071 5.52874 5.57458 5.61626 5.65226 5.76079 5.81261 5.85510 5.91230 5.99204 6.03078 6.05935 6.16173 6.20861 6.24349 6.31578 6.51957 6.60642 6.76139 6.78306 6.82124 6.95116 7.05728 7.08638 7.13107 7.43167 7.65174 7.78862 7.85740 8.06647 8.24909 8.39503 8.62728 8.74915 9.08988 9.87540 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.002811 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.646097 B = 9958.637365 C =10571.205526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 C -0.139 4.139 4 C -0.121 4.121 5 C 0.186 3.814 6 H 0.092 0.908 7 N -0.729 5.729 8 C 0.574 3.426 9 O -0.573 6.573 10 C -0.284 4.284 11 C -0.063 4.063 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.442 4.442 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.771 5.771 18 Si 0.912 3.088 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.272 1.272 22 C -0.239 4.239 23 C -0.021 4.021 24 C -0.101 4.101 25 C -0.084 4.084 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.112 4.112 29 C -0.079 4.079 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.396 0.604 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.137 -2.010 -6.009 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.159 4.159 5 C 0.081 3.919 6 H 0.110 0.890 7 N -0.382 5.382 8 C 0.369 3.631 9 O -0.455 6.455 10 C -0.288 4.288 11 C -0.082 4.082 12 C -0.197 4.197 13 C 0.125 3.875 14 C -0.470 4.470 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.395 5.395 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.259 4.259 23 C -0.040 4.040 24 C -0.102 4.102 25 C -0.103 4.103 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.130 4.130 29 C -0.080 4.080 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.233 0.767 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.137 -2.674 -5.936 16.477 hybrid contribution 0.512 1.136 0.000 1.246 sum -14.625 -1.538 -5.936 15.858 Atomic orbital electron populations 1.21821 0.93694 1.01945 1.01853 1.20112 0.95612 0.95090 0.91844 1.21900 1.01552 0.94096 1.02096 1.22745 0.96117 0.99877 0.97113 1.20119 0.85673 0.95786 0.90365 0.88999 1.46040 1.05449 1.11453 1.75290 1.18600 0.82705 0.87430 0.74408 1.90609 1.86175 1.16374 1.52311 1.18898 0.92114 0.93503 1.24295 1.20456 0.97035 0.92638 0.98046 1.20967 0.92118 0.99609 1.07011 1.17784 0.93049 0.90924 0.85694 1.19878 0.96126 1.02050 1.28964 0.89695 1.26099 0.96712 0.99097 0.92774 1.69753 1.26669 1.24893 1.18143 0.86178 0.81027 0.79921 0.79274 1.18058 1.19380 1.19672 1.20718 0.96930 0.93815 1.14396 1.20352 0.91529 0.97967 0.94201 1.20918 0.96032 0.96864 0.96426 1.20846 0.98813 0.98316 0.92288 1.21062 0.97758 0.99783 0.95851 1.21001 0.96704 0.97047 0.98977 1.20502 1.00475 1.00142 0.91880 1.20464 0.96678 0.96894 0.93920 0.92241 0.92533 0.92429 0.92125 0.92296 0.91891 0.89615 0.89567 0.76696 0.89542 0.86229 0.90304 0.88416 0.88138 0.85621 0.86131 0.86241 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.30 37.16 0.31 -0.84 16 2 C -0.03 -0.28 0.89 -154.63 -0.14 -0.42 16 3 C -0.14 -1.44 8.43 37.16 0.31 -1.13 16 4 C -0.12 -1.33 5.69 -25.32 -0.14 -1.47 16 5 C 0.19 2.72 3.16 -68.05 -0.22 2.51 16 6 H 0.09 1.47 7.65 -51.93 -0.40 1.07 16 7 N -0.73 -12.31 4.95 -54.93 -0.27 -12.58 16 8 C 0.57 12.12 7.75 -12.42 -0.10 12.02 16 9 O -0.57 -13.29 15.84 5.29 0.08 -13.21 16 10 C -0.28 -6.49 5.89 -104.73 -0.62 -7.10 16 11 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 12 C -0.18 -4.35 8.64 -39.27 -0.34 -4.69 16 13 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 14 C -0.44 -11.00 9.04 -37.75 -0.34 -11.34 16 15 H 0.08 2.03 7.91 -52.48 -0.42 1.61 16 16 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 17 N -0.77 -18.37 10.95 55.56 0.61 -17.76 16 18 Si 0.91 17.22 29.60 -169.99 -5.03 12.19 16 19 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 20 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 C -0.24 -5.80 9.73 -39.27 -0.38 -6.18 16 23 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 24 C -0.10 -1.49 5.76 -104.20 -0.60 -2.09 16 25 C -0.08 -1.28 10.04 -39.54 -0.40 -1.68 16 26 C -0.13 -1.63 10.05 -39.62 -0.40 -2.03 16 27 C -0.12 -1.38 10.05 -39.62 -0.40 -1.77 16 28 C -0.11 -1.30 9.79 -39.54 -0.39 -1.69 16 29 C -0.08 -1.00 4.92 -104.20 -0.51 -1.51 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.73 6.42 -51.93 -0.33 0.40 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 37 H 0.09 0.89 7.80 -51.93 -0.41 0.49 16 38 H 0.40 6.13 4.93 -40.82 -0.20 5.93 16 39 H 0.09 1.64 6.37 -52.49 -0.33 1.31 16 40 H 0.12 2.96 6.15 -52.49 -0.32 2.64 16 41 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 42 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 43 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 44 H 0.13 2.09 7.87 -52.49 -0.41 1.68 16 45 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 47 H 0.12 1.09 7.99 -52.49 -0.42 0.67 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -28.25 382.23 -11.20 -39.44 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.57 Total: 13.91 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -5.78 Total: -27.75 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.34 Total: -30.34 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.25 -11.20 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332235567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.040 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds