Wall clock time and date at job start Tue Mar 31 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38307 * 119.95893 * 2 1 4 4 C 1.38266 * 120.14704 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.07574 * 359.73520 * 4 3 2 6 6 C 1.38899 * 119.92239 * 0.49605 * 5 4 3 7 7 N 1.39669 * 120.07422 * 179.78851 * 6 5 4 8 8 C 1.46500 * 120.00191 * 118.65924 * 7 6 5 9 9 C 1.50702 * 109.46985 * 275.00040 * 8 7 6 10 10 H 1.07994 * 120.00050 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99724 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99995 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99973 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47429 * 89.99703 * 13 11 9 15 15 H 1.48502 * 109.46789 * 209.99888 * 13 11 9 16 16 H 1.48499 * 109.47261 * 329.99250 * 13 11 9 17 17 S 1.65604 * 120.00040 * 298.65771 * 7 6 5 18 18 O 1.42106 * 106.40207 * 333.36324 * 17 7 6 19 19 O 1.42092 * 106.40187 * 200.44006 * 17 7 6 20 20 C 1.76205 * 107.21502 * 86.89841 * 17 7 6 21 21 C 1.38425 * 122.53939 * 84.42046 * 20 17 7 22 22 C 1.33386 * 114.92308 * 179.97438 * 21 20 17 23 23 S 1.75882 * 109.59381 * 0.02562 * 22 21 20 24 24 C 1.33387 * 122.54007 * 264.12595 * 20 17 7 25 25 C 1.38076 * 119.96445 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47238 * 270.02439 * 1 2 3 27 27 H 1.09004 * 109.47580 * 30.02600 * 1 2 3 28 28 H 1.09005 * 109.47381 * 150.02051 * 1 2 3 29 29 H 1.07998 * 119.92780 * 359.96954 * 3 2 1 30 30 H 1.07997 * 119.96235 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.03833 * 180.27518 * 5 4 3 32 32 H 1.09004 * 109.46906 * 35.00109 * 8 7 6 33 33 H 1.08994 * 109.47010 * 154.99584 * 8 7 6 34 34 H 0.96995 * 120.00018 * 180.02562 * 12 11 9 35 35 H 1.08003 * 122.53652 * 359.95913 * 21 20 17 36 36 H 1.07999 * 125.19884 * 180.02562 * 22 21 20 37 37 H 1.07999 * 125.20569 * 0.02891 * 24 20 17 38 38 H 1.08004 * 120.03297 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5803 1.2028 -0.0005 5 6 4.2765 0.0098 0.0045 6 6 3.5859 -1.1954 -0.0004 7 7 4.2866 -2.4035 0.0001 8 6 4.1235 -3.3445 1.1111 9 6 5.0596 -2.9674 2.2303 10 1 5.7111 -2.1127 2.1245 11 6 5.0841 -3.7137 3.3894 12 7 5.9013 -3.3850 4.3660 13 14 3.9576 -5.1926 3.5721 14 1 4.6493 -6.4069 3.0700 15 1 3.6110 -5.3768 5.0043 16 1 2.7167 -4.9696 2.7874 17 16 5.3020 -2.7725 -1.2550 18 8 4.8106 -2.0700 -2.3884 19 8 5.4753 -4.1826 -1.2297 20 6 6.8737 -2.0710 -0.8779 21 6 7.8053 -2.7157 -0.0826 22 6 8.9444 -2.0470 0.1036 23 16 8.8755 -0.5140 -0.7558 24 6 7.2582 -0.8810 -1.3418 25 6 2.1966 -1.1962 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6558 2.1325 -0.0005 30 1 4.1166 2.1402 -0.0010 31 1 5.3564 0.0141 0.0085 32 1 3.0948 -3.3082 1.4699 33 1 4.3536 -4.3536 0.7693 34 1 5.9188 -3.9103 5.1812 35 1 7.6236 -3.6865 0.3543 36 1 9.7809 -2.3939 0.6921 37 1 6.6661 -0.2397 -1.9779 38 1 1.6566 -2.1315 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349969063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:40 Heat of formation + Delta-G solvation = -5.256745 kcal Electronic energy + Delta-G solvation = -25213.094108 eV Core-core repulsion = 21660.647748 eV Total energy + Delta-G solvation = -3552.446360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.29263 -37.52632 -36.86085 -35.79517 -35.45801 -32.74079 -32.14232 -29.75078 -29.54887 -27.47628 -26.55855 -24.37215 -22.84071 -21.50666 -21.35436 -20.06720 -18.25384 -18.06029 -17.03288 -17.02079 -16.39240 -16.22456 -15.65853 -14.97318 -14.56911 -14.13398 -13.85964 -13.66244 -13.52795 -13.18924 -12.97934 -12.77401 -12.56149 -12.45812 -12.34632 -12.20124 -11.93930 -11.72836 -11.66799 -11.46540 -11.41588 -11.25478 -11.06615 -10.79429 -10.56566 -10.43927 -10.36378 -9.71348 -9.02947 -8.82951 -8.69526 -8.48358 -8.42917 -7.85578 -6.19546 -4.20814 0.65326 0.94038 1.62941 1.70080 1.78792 2.04413 2.56181 3.22698 3.28892 3.31973 3.42663 3.97931 4.17930 4.30748 4.71805 5.03433 5.05541 5.12123 5.13727 5.30352 5.39832 5.45824 5.57242 5.66524 5.70480 5.73996 5.91870 5.96919 6.14398 6.22404 6.34240 6.37096 6.53485 6.63572 6.69585 6.76071 6.84021 6.95898 7.06112 7.42632 7.56480 8.34598 8.84378 9.39363 10.92618 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.007999 B = 0.007271 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.538608 B = 3850.118235 C = 5791.405810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 C -0.136 4.136 4 C -0.098 4.098 5 C -0.143 4.143 6 C 0.191 3.809 7 N -0.931 5.931 8 C 0.210 3.790 9 C -0.541 4.541 10 H 0.083 0.917 11 C 0.080 3.920 12 N -0.890 5.890 13 Si 0.865 3.135 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.263 1.263 17 S 2.704 3.296 18 O -0.962 6.962 19 O -0.948 6.948 20 C -0.666 4.666 21 C -0.047 4.047 22 C -0.217 4.217 23 S 0.117 5.883 24 C -0.102 4.102 25 C -0.122 4.122 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.266 0.734 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.179 0.821 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 7.737 -9.485 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.117 4.117 5 C -0.164 4.164 6 C 0.096 3.904 7 N -0.761 5.761 8 C 0.089 3.911 9 C -0.580 4.580 10 H 0.101 0.899 11 C -0.124 4.124 12 N -0.527 5.527 13 Si 0.691 3.309 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.187 1.187 17 S 2.793 3.207 18 O -0.953 6.953 19 O -0.938 6.938 20 C -0.767 4.767 21 C -0.075 4.075 22 C -0.353 4.353 23 S 0.379 5.621 24 C -0.241 4.241 25 C -0.143 4.143 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.187 0.813 37 H 0.197 0.803 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.668 8.323 -10.169 13.157 hybrid contribution -0.748 -1.547 1.232 2.114 sum -1.415 6.775 -8.937 11.304 Atomic orbital electron populations 1.20767 0.91302 1.02480 1.02245 1.19705 0.95799 0.92724 0.99356 1.20900 0.94113 0.97181 1.03238 1.20863 0.94159 0.97191 0.99470 1.21311 1.00103 0.92053 1.02894 1.17233 0.90862 0.84635 0.97638 1.55179 1.55950 1.25770 1.39175 1.19881 0.99209 0.87799 0.84214 1.21346 1.22347 1.15415 0.98887 0.89883 1.24793 0.95061 0.97094 0.95439 1.69880 1.36989 1.39734 1.06112 0.87011 0.82074 0.83918 0.77858 1.19537 1.20902 1.18742 1.01713 0.72824 0.73639 0.72505 1.93551 1.79040 1.75335 1.47339 1.93557 1.85989 1.28067 1.86200 1.30121 1.25554 1.06999 1.13982 1.19770 0.90800 1.01505 0.95435 1.25656 1.03709 0.97711 1.08184 1.83993 1.12815 1.20293 1.44988 1.25677 0.99250 0.98041 1.01101 1.21035 0.92915 0.98099 1.02244 0.91206 0.91720 0.91633 0.86324 0.85999 0.86138 0.93816 0.93039 0.92432 0.82299 0.81279 0.80334 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.08 -1.09 5.88 -104.66 -0.62 -1.71 16 3 C -0.14 -1.85 9.70 -39.55 -0.38 -2.24 16 4 C -0.10 -1.43 10.04 -39.61 -0.40 -1.83 16 5 C -0.14 -2.48 9.69 -39.38 -0.38 -2.86 16 6 C 0.19 3.65 4.87 -83.79 -0.41 3.24 16 7 N -0.93 -19.19 2.82 -59.81 -0.17 -19.36 16 8 C 0.21 4.84 4.41 -5.19 -0.02 4.82 16 9 C -0.54 -14.21 9.92 -34.44 -0.34 -14.55 16 10 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 11 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 13 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 17 S 2.70 53.60 5.50 -107.50 -0.59 53.00 16 18 O -0.96 -19.22 16.80 -57.17 -0.96 -20.18 16 19 O -0.95 -20.79 16.26 -57.17 -0.93 -21.72 16 20 C -0.67 -11.94 5.53 -41.21 -0.23 -12.16 16 21 C -0.05 -0.86 9.76 -41.21 -0.40 -1.26 16 22 C -0.22 -3.35 11.23 29.04 0.33 -3.02 16 23 S 0.12 1.56 23.34 -107.50 -2.51 -0.95 16 24 C -0.10 -1.55 9.10 29.04 0.26 -1.28 16 25 C -0.12 -2.09 9.08 -39.39 -0.36 -2.45 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.12 2.02 5.96 -52.49 -0.31 1.71 16 32 H 0.04 0.98 6.69 -51.93 -0.35 0.64 16 33 H 0.05 1.19 6.32 -51.93 -0.33 0.87 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.16 3.03 8.06 -52.48 -0.42 2.61 16 36 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.18 2.33 7.92 -52.49 -0.42 1.91 16 38 H 0.12 2.01 7.99 -52.48 -0.42 1.59 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -31.56 349.36 -10.84 -42.40 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.37 Total: 4.85 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: -2.68 Total: -34.09 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.60 Total: -44.26 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.89 Total: -41.90 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Atomic # 16 Polarization: 55.15 SS G_CDS: -3.10 Total: 52.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.56 -10.84 -42.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349969063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.140 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds