Wall clock time and date at job start Tue Mar 31 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86792 * 120.00548 * 2 1 4 4 H 1.48498 * 109.47486 * 269.99784 * 3 2 1 5 5 H 1.48499 * 109.47190 * 29.99571 * 3 2 1 6 6 H 1.48508 * 109.47505 * 149.99664 * 3 2 1 7 7 C 1.40125 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00309 * 180.02562 * 7 2 1 9 9 C 1.41291 * 119.99821 * 0.02562 * 7 2 1 10 10 O 1.21855 * 120.00179 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99818 * 180.02562 * 9 7 2 12 12 C 1.39137 * 119.99792 * 174.21848 * 11 9 7 13 13 C 1.38977 * 120.13391 * 335.22180 * 12 11 9 14 14 C 1.38180 * 119.97308 * 179.97438 * 13 12 11 15 15 F 1.35106 * 119.87369 * 179.97438 * 14 13 12 16 16 C 1.38883 * 120.25014 * 0.02562 * 14 13 12 17 17 C 1.38006 * 120.26223 * 359.69159 * 16 14 13 18 18 C 1.38968 * 120.02195 * 0.56541 * 17 16 14 19 19 N 1.39254 * 120.12382 * 179.74249 * 18 17 16 20 20 C 1.39610 * 120.00184 * 245.65365 * 19 18 17 21 21 C 1.38986 * 120.07097 * 4.74439 * 20 19 18 22 22 C 1.38065 * 119.96676 * 179.77321 * 21 20 19 23 23 C 1.38559 * 120.10519 * 0.50674 * 22 21 20 24 24 F 1.35096 * 119.93634 * 179.76983 * 23 22 21 25 25 C 1.38509 * 120.13297 * 359.74519 * 23 22 21 26 26 C 1.38247 * 120.03870 * 0.02562 * 25 23 22 27 27 F 1.35097 * 120.05038 * 179.97438 * 26 25 23 28 28 H 0.97010 * 119.99552 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00305 * 354.21602 * 11 9 7 30 30 H 1.08002 * 120.01227 * 359.95568 * 13 12 11 31 31 H 1.07998 * 119.86567 * 180.02562 * 16 14 13 32 32 H 1.08004 * 119.99164 * 180.28024 * 17 16 14 33 33 H 0.97006 * 119.99634 * 65.37244 * 19 18 17 34 34 H 1.08001 * 120.01215 * 0.02562 * 21 20 19 35 35 H 1.08001 * 119.95308 * 180.25324 * 22 21 20 36 36 H 1.08005 * 119.98130 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.4881 2.0463 -1.4000 5 1 1.4380 2.6526 0.6999 6 1 3.5381 1.4400 0.7001 7 6 2.0069 -1.2135 0.0005 8 1 3.0869 -1.2137 0.0010 9 6 1.3004 -2.4371 0.0005 10 8 0.0818 -2.4371 0.0005 11 7 1.9742 -3.6043 0.0016 12 6 1.2836 -4.8061 0.1230 13 6 0.0382 -4.8360 0.7390 14 6 -0.6449 -6.0313 0.8573 15 9 -1.8553 -6.0581 1.4571 16 6 -0.0916 -7.2053 0.3630 17 6 1.1418 -7.1862 -0.2558 18 6 1.8410 -5.9912 -0.3760 19 7 3.0881 -5.9704 -0.9952 20 6 4.2295 -5.6550 -0.2557 21 6 4.1375 -5.4582 1.1171 22 6 5.2684 -5.1510 1.8471 23 6 6.4936 -5.0281 1.2117 24 9 7.5972 -4.7228 1.9286 25 6 6.5892 -5.2181 -0.1570 26 6 5.4613 -5.5306 -0.8927 27 9 5.5542 -5.7155 -2.2278 28 1 -0.4850 0.8402 -0.0004 29 1 2.9405 -3.6066 -0.0823 30 1 -0.3953 -3.9254 1.1254 31 1 -0.6312 -8.1360 0.4584 32 1 1.5660 -8.1010 -0.6426 33 1 3.1643 -6.1791 -1.9395 34 1 3.1825 -5.5496 1.6132 35 1 5.1974 -5.0022 2.9144 36 1 7.5456 -5.1222 -0.6497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357645303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:21 Heat of formation + Delta-G solvation = -109.455540 kcal Electronic energy + Delta-G solvation = -28426.345595 eV Core-core repulsion = 23847.045935 eV Total energy + Delta-G solvation = -4579.299660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.083 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.92690 -48.82389 -48.45161 -40.27413 -38.58059 -37.26487 -35.09153 -33.65871 -32.53020 -30.83982 -30.13550 -29.45730 -27.51116 -26.45842 -23.56135 -22.85553 -22.53261 -21.31103 -20.14503 -18.43688 -18.00262 -17.80657 -17.21312 -17.09248 -16.17969 -16.06382 -15.88433 -15.57223 -15.40289 -15.21708 -15.11815 -14.94343 -14.46242 -14.23752 -14.12918 -13.61629 -13.20855 -13.03342 -12.95598 -12.78896 -12.56298 -12.32289 -12.13260 -11.73599 -11.48171 -11.35872 -11.21995 -11.06293 -10.75845 -10.43490 -10.33138 -9.65836 -9.08654 -9.03717 -8.46864 -7.83921 -7.64774 -7.07962 -6.51115 -5.06594 0.97692 1.06213 1.47416 1.70409 2.98174 3.06416 3.09801 3.24370 3.40474 3.82292 3.88218 3.93974 4.29443 4.32020 4.37713 4.56837 4.76585 4.82640 5.10317 5.13275 5.35441 5.40729 5.54995 5.75437 5.82014 5.85782 5.87616 5.99017 6.12138 6.15286 6.33999 6.55857 6.65686 6.74857 7.09039 7.15932 7.30406 7.55013 7.65556 7.86075 7.96274 8.65862 9.04878 10.20840 10.39869 Molecular weight = 336.08amu Principal moments of inertia in cm(-1) A = 0.007326 B = 0.005623 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3821.310494 B = 4978.467377 C = 7705.973281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.531 4.531 8 H 0.071 0.929 9 C 0.537 3.463 10 O -0.562 6.562 11 N -0.684 5.684 12 C 0.228 3.772 13 C -0.174 4.174 14 C 0.123 3.877 15 F -0.143 7.143 16 C -0.200 4.200 17 C -0.069 4.069 18 C 0.048 3.952 19 N -0.673 5.673 20 C 0.177 3.823 21 C -0.136 4.136 22 C -0.106 4.106 23 C 0.066 3.934 24 F -0.140 7.140 25 C -0.142 4.142 26 C 0.050 3.950 27 F -0.135 7.135 28 H 0.275 0.725 29 H 0.394 0.606 30 H 0.169 0.831 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.411 0.589 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.055 -11.737 0.793 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.566 4.566 8 H 0.089 0.911 9 C 0.348 3.652 10 O -0.446 6.446 11 N -0.324 5.324 12 C 0.122 3.878 13 C -0.196 4.196 14 C 0.102 3.898 15 F -0.121 7.121 16 C -0.221 4.221 17 C -0.089 4.089 18 C -0.049 4.049 19 N -0.297 5.297 20 C 0.073 3.927 21 C -0.159 4.159 22 C -0.126 4.126 23 C 0.044 3.956 24 F -0.118 7.118 25 C -0.162 4.162 26 C 0.026 3.974 27 F -0.114 7.114 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.187 0.813 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.248 0.752 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.902 -11.436 0.876 13.928 hybrid contribution 0.964 0.741 -0.583 1.349 sum 8.866 -10.695 0.293 13.895 Atomic orbital electron populations 1.69999 1.07316 1.28233 1.31218 1.25763 0.94691 1.00803 0.92351 0.86261 0.80298 0.80521 0.79242 1.19378 1.20042 1.18497 1.19959 0.94506 0.89971 1.52161 0.91101 1.17006 0.87653 0.81958 0.78598 1.90644 1.13365 1.85595 1.54964 1.44317 1.10119 1.04295 1.73628 1.17992 0.91692 0.86029 0.92043 1.21567 0.96022 0.98756 1.03298 1.17675 0.81506 0.94334 0.96240 1.91464 1.42084 1.97320 1.81250 1.20703 0.97886 0.97195 1.06313 1.20696 0.94198 0.96105 0.97926 1.17222 0.88342 0.92594 1.06729 1.41340 1.01651 1.75525 1.11205 1.17971 0.85798 0.97123 0.91806 1.20592 0.99767 1.04564 0.90959 1.20985 0.90433 0.99905 1.01245 1.17076 0.83322 1.06332 0.88821 1.91486 1.51513 1.91089 1.77747 1.20756 0.98929 1.03568 0.92977 1.16670 0.92576 1.10380 0.77746 1.91472 1.96749 1.93436 1.29744 0.91378 0.77068 0.81337 0.85365 0.85369 0.75150 0.83799 0.84004 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.56 11.72 55.55 0.65 -19.91 16 2 C 0.09 2.28 5.50 -17.35 -0.10 2.18 16 3 Si 0.91 18.83 29.56 -169.99 -5.02 13.80 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.53 -13.94 9.29 -37.71 -0.35 -14.29 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.54 14.15 7.35 -15.10 -0.11 14.04 16 10 O -0.56 -16.59 12.02 5.05 0.06 -16.53 16 11 N -0.68 -14.52 5.05 -12.38 -0.06 -14.58 16 12 C 0.23 4.36 5.27 -83.56 -0.44 3.92 16 13 C -0.17 -3.54 8.68 -39.33 -0.34 -3.88 16 14 C 0.12 2.15 7.30 -39.36 -0.29 1.87 16 15 F -0.14 -2.55 17.26 2.25 0.04 -2.51 16 16 C -0.20 -2.85 10.02 -39.43 -0.40 -3.24 16 17 C -0.07 -0.92 9.96 -39.40 -0.39 -1.31 16 18 C 0.05 0.74 4.99 -83.50 -0.42 0.32 16 19 N -0.67 -9.11 5.15 -8.15 -0.04 -9.16 16 20 C 0.18 2.37 5.31 -83.67 -0.44 1.92 16 21 C -0.14 -1.80 7.97 -39.37 -0.31 -2.11 16 22 C -0.11 -1.28 10.02 -39.53 -0.40 -1.67 16 23 C 0.07 0.81 7.30 -39.36 -0.29 0.52 16 24 F -0.14 -1.76 17.26 2.25 0.04 -1.73 16 25 C -0.14 -1.68 10.00 -39.48 -0.39 -2.08 16 26 C 0.05 0.64 7.31 -39.21 -0.29 0.36 16 27 F -0.14 -1.75 16.65 2.25 0.04 -1.71 16 28 H 0.28 6.90 8.29 -40.82 -0.34 6.56 16 29 H 0.39 7.65 6.05 -40.82 -0.25 7.41 16 30 H 0.17 4.07 5.78 -52.49 -0.30 3.76 16 31 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 33 H 0.41 5.03 8.32 -40.82 -0.34 4.69 16 34 H 0.14 2.00 6.35 -52.49 -0.33 1.67 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.15 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 327.13 15.07 4.93 4.93 Total: -1.00 -29.67 327.13 -6.79 -36.45 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -2.46 Total: 14.40 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -4.95 Total: -3.45 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.55 Total: -43.65 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.06 Total: -16.53 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.12 Total: -5.95 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.67 -6.79 -36.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357645303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.001 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds