Wall clock time and date at job start Tue Mar 31 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.34132 * 2 1 4 4 C 1.53247 * 109.40659 * 119.79807 * 2 1 3 5 5 S 1.81901 * 108.50495 * 182.12286 * 4 2 1 6 6 C 1.81897 * 101.91653 * 308.69545 * 5 4 2 7 7 C 1.53248 * 108.50320 * 51.30390 * 6 5 4 8 8 N 1.46466 * 109.40849 * 240.19882 * 2 1 3 9 9 C 1.46899 * 111.00102 * 42.11170 * 8 2 1 10 10 C 1.53002 * 109.47034 * 176.79379 * 9 8 2 11 11 H 1.08997 * 109.47023 * 296.54014 * 10 9 8 12 12 O 1.42899 * 109.46800 * 56.54184 * 10 9 8 13 13 C 1.53007 * 109.46769 * 176.54047 * 10 9 8 14 14 O 1.42896 * 109.46669 * 175.00177 * 13 10 9 15 15 C 1.35679 * 116.99761 * 180.02562 * 14 13 10 16 16 C 1.39308 * 119.81557 * 359.72352 * 15 14 13 17 17 C 1.36438 * 120.18366 * 179.76453 * 16 15 14 18 18 C 1.40838 * 119.81187 * 0.50984 * 17 16 15 19 19 C 1.41208 * 120.18027 * 179.77006 * 18 17 16 20 20 H 1.08003 * 119.99862 * 206.39382 * 19 18 17 21 21 C 1.39884 * 120.00422 * 26.38739 * 19 18 17 22 22 N 1.30885 * 119.99831 * 13.31127 * 21 19 18 23 23 Si 1.86803 * 120.00500 * 193.30947 * 21 19 18 24 24 H 1.48496 * 109.47034 * 90.00139 * 23 21 19 25 25 H 1.48500 * 109.47386 * 210.00402 * 23 21 19 26 26 H 1.48501 * 109.46779 * 330.00370 * 23 21 19 27 27 C 1.40831 * 119.63965 * 359.73957 * 18 17 16 28 28 C 1.36444 * 119.81130 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47133 * 300.19681 * 1 2 3 30 30 H 1.08994 * 109.47138 * 60.20105 * 1 2 3 31 31 H 1.09000 * 109.46869 * 180.19919 * 1 2 3 32 32 H 1.08998 * 109.63642 * 301.82621 * 4 2 1 33 33 H 1.08996 * 109.63019 * 62.22099 * 4 2 1 34 34 H 1.08996 * 109.63351 * 171.00795 * 6 5 4 35 35 H 1.09004 * 109.63164 * 291.60085 * 6 5 4 36 36 H 1.09009 * 109.40761 * 58.11771 * 7 6 5 37 37 H 1.09005 * 109.40640 * 177.87703 * 7 6 5 38 38 H 1.09006 * 109.47122 * 296.79739 * 9 8 2 39 39 H 1.09004 * 109.46896 * 56.79596 * 9 8 2 40 40 H 0.96696 * 114.00340 * 60.00588 * 12 10 9 41 41 H 1.08995 * 109.47090 * 295.00115 * 13 10 9 42 42 H 1.08993 * 109.47100 * 55.00154 * 13 10 9 43 43 H 1.08002 * 119.90803 * 359.97438 * 16 15 14 44 44 H 1.08002 * 120.09463 * 180.25411 * 17 16 15 45 45 H 0.96996 * 119.99904 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.09460 * 180.02562 * 27 18 17 47 47 H 1.08004 * 119.90688 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8910 1.0285 0.0000 4 6 2.0391 -0.7183 1.2543 5 16 3.8568 -0.6488 1.2615 6 6 4.2629 -1.2664 -0.4005 7 6 3.4475 -0.4726 -1.4269 8 7 2.0167 -0.6866 -1.1987 9 6 1.2321 -0.3033 -2.3800 10 6 1.8187 -0.9768 -3.6223 11 1 2.8320 -0.6117 -3.7892 12 8 1.8482 -2.3922 -3.4276 13 6 0.9510 -0.6473 -4.8387 14 8 1.5611 -1.1782 -6.0168 15 6 0.9148 -0.9717 -7.1917 16 6 -0.2906 -0.2734 -7.2058 17 6 -0.9445 -0.0573 -8.3836 18 6 -0.4029 -0.5516 -9.5860 19 6 -1.0756 -0.3366 -10.8088 20 1 -0.9367 -1.0245 -11.6298 21 6 -1.9219 0.7674 -10.9570 22 7 -1.8952 1.7352 -10.0762 23 14 -3.0899 0.8604 -12.4118 24 1 -4.3845 0.2304 -12.0481 25 1 -3.3161 2.2824 -12.7749 26 1 -2.4976 0.1422 -13.5688 27 6 0.8135 -1.2610 -9.5623 28 6 1.4571 -1.4643 -8.3766 29 1 -0.3633 0.5169 0.8882 30 1 -0.3633 0.5107 -0.8917 31 1 -0.3633 -1.0277 0.0036 32 1 1.6502 -0.2224 2.1436 33 1 1.7095 -1.7571 1.2406 34 1 5.3270 -1.1286 -0.5925 35 1 4.0092 -2.3242 -0.4702 36 1 3.6753 0.5888 -1.3279 37 1 3.7078 -0.8054 -2.4318 38 1 0.1979 -0.6216 -2.2482 39 1 1.2662 0.7792 -2.5033 40 1 0.9788 -2.7862 -3.2732 41 1 -0.0371 -1.0891 -4.7106 42 1 0.8557 0.4342 -4.9348 43 1 -0.7070 0.1007 -6.2821 44 1 -1.8768 0.4878 -8.3933 45 1 -2.4818 2.5008 -10.1791 46 1 1.2356 -1.6429 -10.4801 47 1 2.3903 -2.0078 -8.3566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408512954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:23 Heat of formation + Delta-G solvation = -59.250473 kcal Electronic energy + Delta-G solvation = -26615.921269 eV Core-core repulsion = 22890.046883 eV Total energy + Delta-G solvation = -3725.874386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.76375 -38.74494 -37.03243 -35.94484 -33.35031 -33.23673 -31.80582 -29.80995 -29.58779 -28.65593 -27.68071 -25.46293 -24.45021 -23.51584 -21.87717 -20.95322 -20.44821 -20.28628 -17.39957 -17.22916 -17.05242 -16.57481 -16.55399 -16.04602 -15.31714 -15.16251 -14.93865 -14.58286 -14.42373 -14.07773 -13.94074 -13.64064 -13.33060 -12.92420 -12.81274 -12.62298 -12.56500 -12.48196 -12.29737 -12.12979 -11.96212 -11.77561 -11.54451 -11.46860 -11.26871 -11.15367 -11.04928 -10.66980 -10.50633 -10.05405 -9.96480 -9.90584 -9.79148 -9.38694 -9.08493 -8.70894 -7.98479 -7.69316 -7.01688 -6.72371 -4.29715 1.49371 2.21678 2.73592 2.93311 3.06535 3.10070 3.18270 3.18752 3.90049 3.93655 4.30358 4.40533 4.49118 4.60954 4.67354 4.73416 4.79117 4.87521 4.89584 5.04864 5.08272 5.11175 5.20282 5.26932 5.31883 5.42049 5.50841 5.54002 5.59686 5.63449 5.63936 5.78100 5.95481 6.05950 6.24922 6.56342 6.68555 6.70294 6.85487 7.04219 7.26031 7.37558 7.52841 7.67031 7.87139 7.97678 8.12595 8.40926 8.62140 8.88215 8.95845 10.22077 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.027221 B = 0.001969 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.382963 B =14213.524640 C =14890.659682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 H 0.054 0.946 4 C -0.067 4.067 5 S -0.283 6.283 6 C -0.069 4.069 7 C 0.047 3.953 8 N -0.534 5.534 9 C 0.028 3.972 10 C 0.110 3.890 11 H 0.106 0.894 12 O -0.539 6.539 13 C 0.039 3.961 14 O -0.318 6.318 15 C -0.007 4.007 16 C -0.177 4.177 17 C -0.130 4.130 18 C 0.085 3.915 19 C -0.461 4.461 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.806 5.806 23 Si 0.910 3.090 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.193 4.193 28 C -0.114 4.114 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.373 0.627 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.278 0.722 46 H 0.100 0.900 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.099 -1.555 20.000 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 H 0.072 0.928 4 C -0.215 4.215 5 S -0.056 6.056 6 C -0.217 4.217 7 C -0.082 4.082 8 N -0.260 5.260 9 C -0.100 4.100 10 C 0.050 3.950 11 H 0.123 0.877 12 O -0.343 6.343 13 C -0.038 4.038 14 O -0.234 6.234 15 C -0.050 4.050 16 C -0.196 4.196 17 C -0.150 4.150 18 C 0.083 3.917 19 C -0.492 4.492 20 H 0.095 0.905 21 C -0.144 4.144 22 N -0.433 5.433 23 Si 0.735 3.265 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.213 4.213 28 C -0.133 4.133 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.220 0.780 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.142 0.858 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.477 -1.485 20.899 21.656 hybrid contribution -2.066 0.841 -1.541 2.712 sum 3.411 -0.644 19.357 19.666 Atomic orbital electron populations 1.22029 0.93425 1.03072 1.02558 1.21797 0.95891 0.95704 0.89401 0.92767 1.23538 0.92888 1.04813 1.00292 1.86924 1.08354 1.87034 1.23268 1.23491 1.02757 1.03341 0.92130 1.22388 0.87144 0.98344 1.00327 1.61096 1.03025 1.59299 1.02537 1.22764 0.98760 0.98712 0.89783 1.21994 1.00322 0.82535 0.90169 0.87657 1.86601 1.34524 1.19035 1.94185 1.23089 0.96331 0.98643 0.85769 1.85857 1.48898 1.75694 1.12941 1.18607 0.95432 1.06585 0.84415 1.20606 0.96516 1.04159 0.98283 1.21016 1.00566 1.02706 0.90691 1.17619 0.90271 0.90592 0.93244 1.19480 1.22657 1.08223 0.98817 0.90531 1.25874 0.96388 0.94626 0.97492 1.69811 1.32866 1.06334 1.34329 0.86280 0.80660 0.78043 0.81510 1.19419 1.20400 1.18687 1.20638 0.96951 1.08238 0.95437 1.19623 0.99941 1.03172 0.90574 0.91721 0.91665 0.91351 0.87693 0.88936 0.87553 0.88654 0.93611 0.88226 0.89247 0.93416 0.78048 0.92763 0.92452 0.88940 0.85816 0.91082 0.88157 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.29 37.16 0.31 -0.68 16 2 C 0.08 0.65 2.49 -67.82 -0.17 0.48 16 3 H 0.05 0.47 7.92 -51.93 -0.41 0.06 16 4 C -0.07 -0.52 5.97 37.29 0.22 -0.30 16 5 S -0.28 -2.71 22.40 -107.50 -2.41 -5.12 16 6 C -0.07 -0.61 6.69 37.29 0.25 -0.36 16 7 C 0.05 0.43 5.19 -3.93 -0.02 0.41 16 8 N -0.53 -4.78 4.23 -227.03 -0.96 -5.74 16 9 C 0.03 0.25 3.71 -3.82 -0.01 0.24 16 10 C 0.11 1.28 2.62 -26.73 -0.07 1.21 16 11 H 0.11 1.29 6.16 -51.93 -0.32 0.97 16 12 O -0.54 -6.80 13.10 -40.08 -0.53 -7.32 16 13 C 0.04 0.58 4.37 37.16 0.16 0.74 16 14 O -0.32 -6.32 10.09 -23.59 -0.24 -6.56 16 15 C -0.01 -0.16 6.71 -38.79 -0.26 -0.42 16 16 C -0.18 -4.06 8.96 -39.83 -0.36 -4.42 16 17 C -0.13 -3.34 8.62 -39.25 -0.34 -3.68 16 18 C 0.08 2.25 5.57 -106.81 -0.59 1.66 16 19 C -0.46 -12.16 9.05 -37.84 -0.34 -12.50 16 20 H 0.08 1.94 7.88 -52.48 -0.41 1.53 16 21 C 0.07 1.80 5.22 -17.34 -0.09 1.70 16 22 N -0.81 -20.72 10.81 55.54 0.60 -20.12 16 23 Si 0.91 18.62 29.58 -169.99 -5.03 13.59 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 27 C -0.19 -4.73 9.74 -39.25 -0.38 -5.12 16 28 C -0.11 -2.65 9.92 -39.83 -0.40 -3.05 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.43 6.39 -51.93 -0.33 0.10 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.43 7.92 -51.92 -0.41 0.02 16 37 H 0.10 0.99 5.28 -51.93 -0.27 0.72 16 38 H 0.09 0.73 6.44 -51.93 -0.33 0.40 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.37 3.67 9.05 45.56 0.41 4.08 16 41 H 0.05 0.76 7.63 -51.93 -0.40 0.36 16 42 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 43 H 0.09 1.86 6.27 -52.49 -0.33 1.53 16 44 H 0.12 3.26 6.12 -52.49 -0.32 2.94 16 45 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 46 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 47 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -29.13 380.76 -11.38 -40.51 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.47 Total: 9.09 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -2.09 Total: -24.08 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: -0.36 Total: -25.86 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.76 Total: -13.88 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.41 Total: -5.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.13 -11.38 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408512954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.736 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds