Wall clock time and date at job start Tue Mar 31 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.40975 * 2 1 4 4 C 1.53252 * 109.40705 * 240.23563 * 2 1 3 5 5 S 1.81896 * 108.50666 * 177.87947 * 4 2 1 6 6 C 1.81895 * 101.91664 * 51.30258 * 5 4 2 7 7 C 1.53246 * 108.50641 * 308.69852 * 6 5 4 8 8 N 1.46467 * 109.40540 * 119.83952 * 2 1 3 9 9 C 1.46905 * 111.00179 * 317.88338 * 8 2 1 10 10 C 1.52996 * 109.46743 * 166.27168 * 9 8 2 11 11 H 1.09004 * 109.47319 * 60.00344 * 10 9 8 12 12 O 1.42897 * 109.47599 * 299.99862 * 10 9 8 13 13 C 1.53004 * 109.46445 * 179.97438 * 10 9 8 14 14 O 1.42905 * 109.46991 * 184.99802 * 13 10 9 15 15 C 1.35673 * 117.00121 * 180.02562 * 14 13 10 16 16 C 1.39314 * 119.81590 * 359.72645 * 15 14 13 17 17 C 1.36436 * 120.17932 * 179.75936 * 16 15 14 18 18 C 1.40830 * 119.81689 * 0.51508 * 17 16 15 19 19 C 1.41216 * 120.18225 * 179.76265 * 18 17 16 20 20 H 1.08003 * 119.99892 * 28.42856 * 19 18 17 21 21 C 1.39888 * 119.99864 * 208.42749 * 19 18 17 22 22 N 1.30878 * 120.00141 * 15.38685 * 21 19 18 23 23 Si 1.86803 * 119.99803 * 195.38353 * 21 19 18 24 24 H 1.48498 * 109.47308 * 59.99924 * 23 21 19 25 25 H 1.48494 * 109.47298 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46928 * 300.00134 * 23 21 19 27 27 C 1.40835 * 119.63890 * 359.73907 * 18 17 16 28 28 C 1.36437 * 119.81261 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47293 * 307.64534 * 1 2 3 30 30 H 1.09004 * 109.47451 * 67.64497 * 1 2 3 31 31 H 1.08997 * 109.47590 * 187.64649 * 1 2 3 32 32 H 1.08996 * 109.63063 * 297.58512 * 4 2 1 33 33 H 1.09000 * 109.62723 * 57.97202 * 4 2 1 34 34 H 1.09003 * 109.62767 * 68.40047 * 6 5 4 35 35 H 1.08995 * 109.63358 * 188.78938 * 6 5 4 36 36 H 1.09003 * 109.40512 * 301.88282 * 7 6 5 37 37 H 1.09002 * 109.40834 * 182.11965 * 7 6 5 38 38 H 1.08995 * 109.46877 * 46.27006 * 9 8 2 39 39 H 1.08999 * 109.46523 * 286.27334 * 9 8 2 40 40 H 0.96703 * 113.99642 * 300.00801 * 12 10 9 41 41 H 1.08997 * 109.47385 * 304.99891 * 13 10 9 42 42 H 1.08997 * 109.47383 * 65.00414 * 13 10 9 43 43 H 1.07998 * 119.90916 * 0.02562 * 16 15 14 44 44 H 1.08008 * 120.09111 * 180.25453 * 17 16 15 45 45 H 0.97003 * 119.99854 * 180.02562 * 22 21 19 46 46 H 1.08003 * 120.09082 * 179.97438 * 27 18 17 47 47 H 1.08004 * 119.90649 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0392 -0.7176 -1.2548 5 16 3.8568 -0.6482 -1.2620 6 6 4.2629 -1.2667 0.3997 7 6 3.4475 -0.4736 1.4266 8 7 2.0166 -0.6874 1.1983 9 6 1.2320 -0.3048 2.3799 10 6 1.5291 -1.2748 3.5252 11 1 2.5914 -1.2373 3.7667 12 8 1.1772 -2.6019 3.1290 13 6 0.7124 -0.8759 4.7560 14 8 1.0756 -1.7087 5.8590 15 6 0.4388 -1.4847 7.0359 16 6 -0.5162 -0.4744 7.1254 17 6 -1.1647 -0.2459 8.3038 18 6 -0.8585 -1.0277 9.4345 19 6 -1.5214 -0.7945 10.6595 20 1 -2.5226 -0.3895 10.6631 21 6 -0.8812 -1.0883 11.8681 22 7 0.4121 -1.2878 11.8921 23 14 -1.8723 -1.1956 13.4479 24 1 -2.8983 -2.2612 13.3172 25 1 -0.9663 -1.5165 14.5798 26 1 -2.5402 0.1060 13.7027 27 6 0.1120 -2.0435 9.3369 28 6 0.7479 -2.2623 8.1497 29 1 -0.3634 0.6277 0.8137 30 1 -0.3634 0.3909 -0.9504 31 1 -0.3634 -1.0185 0.1367 32 1 1.7124 -1.7573 -1.2400 33 1 1.6473 -0.2232 -2.1437 34 1 4.0091 -2.3245 0.4688 35 1 5.3275 -1.1324 0.5904 36 1 3.6753 0.5878 1.3282 37 1 3.7077 -0.8070 2.4313 38 1 0.1698 -0.3423 2.1384 39 1 1.5005 0.7074 2.6821 40 1 0.2441 -2.7092 2.8989 41 1 0.9154 0.1657 5.0049 42 1 -0.3495 -0.9983 4.5427 43 1 -0.7469 0.1269 6.2584 44 1 -1.9077 0.5351 8.3705 45 1 0.8559 -1.4918 12.7301 46 1 0.3528 -2.6471 10.1995 47 1 1.4927 -3.0407 8.0732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408512955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:26 Heat of formation + Delta-G solvation = -60.686791 kcal Electronic energy + Delta-G solvation = -26514.545766 eV Core-core repulsion = 22788.609096 eV Total energy + Delta-G solvation = -3725.936669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.70959 -38.76057 -37.04062 -35.93240 -33.31498 -33.28840 -31.82288 -30.05310 -29.27165 -28.75844 -27.73976 -25.47342 -24.46700 -23.34468 -21.96148 -20.74177 -20.65350 -20.36890 -17.38950 -17.27094 -17.09000 -16.67591 -16.45697 -15.90409 -15.31558 -15.18053 -14.94534 -14.71139 -14.39173 -14.09933 -13.93711 -13.65944 -13.34346 -13.03351 -12.88544 -12.64744 -12.58465 -12.40669 -12.24943 -12.16517 -11.98792 -11.81104 -11.51673 -11.42282 -11.25708 -11.13267 -10.95070 -10.70347 -10.61074 -10.03623 -10.01558 -9.93123 -9.84121 -9.34789 -9.06857 -8.71984 -8.00659 -7.68003 -7.01917 -6.71608 -4.28450 1.46781 2.19084 2.77352 2.91216 3.07617 3.10058 3.15047 3.19845 3.92861 3.95763 4.26814 4.39885 4.45856 4.61544 4.63244 4.73033 4.76989 4.85021 4.93653 5.03096 5.07696 5.10217 5.18108 5.23214 5.26420 5.39067 5.43985 5.51420 5.56090 5.59912 5.62979 5.75171 5.95803 6.01662 6.18990 6.55269 6.67393 6.69409 6.94420 7.08206 7.16861 7.41790 7.53245 7.70432 7.74916 7.98559 8.17395 8.41839 8.62733 8.88676 8.95987 10.24283 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.035042 B = 0.001856 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.845565 B =15084.602721 C =15494.209068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.083 3.917 3 H 0.054 0.946 4 C -0.068 4.068 5 S -0.281 6.281 6 C -0.071 4.071 7 C 0.052 3.948 8 N -0.534 5.534 9 C 0.022 3.978 10 C 0.116 3.884 11 H 0.103 0.897 12 O -0.538 6.538 13 C 0.038 3.962 14 O -0.317 6.317 15 C -0.006 4.006 16 C -0.170 4.170 17 C -0.195 4.195 18 C 0.089 3.911 19 C -0.467 4.467 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.803 5.803 23 Si 0.908 3.092 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.267 1.267 27 C -0.128 4.128 28 C -0.120 4.120 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.369 0.631 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.280 0.720 46 H 0.123 0.877 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 2.430 -21.636 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 H 0.072 0.928 4 C -0.216 4.216 5 S -0.053 6.053 6 C -0.220 4.220 7 C -0.077 4.077 8 N -0.260 5.260 9 C -0.106 4.106 10 C 0.056 3.944 11 H 0.121 0.879 12 O -0.341 6.341 13 C -0.039 4.039 14 O -0.232 6.232 15 C -0.049 4.049 16 C -0.189 4.189 17 C -0.215 4.215 18 C 0.087 3.913 19 C -0.497 4.497 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.430 5.430 23 Si 0.733 3.267 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.192 1.192 27 C -0.147 4.147 28 C -0.139 4.139 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.216 0.784 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.141 0.859 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.439 1.985 -22.311 22.834 hybrid contribution -1.734 0.907 1.732 2.613 sum 2.705 2.892 -20.579 20.956 Atomic orbital electron populations 1.22041 0.93482 1.03154 1.02398 1.21772 0.95853 0.95673 0.89398 0.92797 1.23555 0.92869 1.04942 1.00264 1.86922 1.08386 1.86932 1.23100 1.23492 1.02767 1.03389 0.92320 1.22291 0.87195 0.98454 0.99749 1.61042 1.02865 1.59386 1.02662 1.22845 0.99637 0.97588 0.90493 1.21882 1.00188 0.82901 0.89448 0.87949 1.86636 1.30995 1.27661 1.88839 1.23104 0.98553 0.94889 0.87373 1.85888 1.62841 1.57328 1.17175 1.18626 0.99617 1.01449 0.85202 1.20393 1.00492 0.99788 0.98193 1.20597 1.04742 1.02185 0.93979 1.17592 0.91656 0.89732 0.92315 1.19398 1.01650 1.38642 0.90027 0.90637 1.25855 0.94693 0.92628 1.01019 1.69809 1.08936 1.35282 1.28956 0.86371 0.80323 0.79765 0.80234 1.18919 1.20412 1.19156 1.20935 0.99517 0.98880 0.95396 1.19845 1.02112 1.00363 0.91594 0.91797 0.91623 0.91109 0.88863 0.87654 0.88627 0.87483 0.93427 0.89023 0.88907 0.93408 0.78418 0.92582 0.92883 0.88974 0.88724 0.90902 0.85932 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.00 37.15 0.30 -0.62 16 2 C 0.08 0.62 2.49 -67.82 -0.17 0.45 16 3 H 0.05 0.44 7.91 -51.93 -0.41 0.03 16 4 C -0.07 -0.51 5.96 37.29 0.22 -0.29 16 5 S -0.28 -2.62 22.39 -107.50 -2.41 -5.03 16 6 C -0.07 -0.61 6.69 37.28 0.25 -0.36 16 7 C 0.05 0.46 5.28 -3.93 -0.02 0.44 16 8 N -0.53 -4.67 4.17 -227.04 -0.95 -5.61 16 9 C 0.02 0.20 4.14 -3.82 -0.02 0.18 16 10 C 0.12 1.36 3.19 -26.73 -0.09 1.27 16 11 H 0.10 1.29 6.33 -51.93 -0.33 0.96 16 12 O -0.54 -6.94 13.17 -40.06 -0.53 -7.47 16 13 C 0.04 0.55 4.37 37.16 0.16 0.72 16 14 O -0.32 -6.34 10.09 -23.55 -0.24 -6.57 16 15 C -0.01 -0.13 6.71 -38.78 -0.26 -0.39 16 16 C -0.17 -3.75 8.96 -39.83 -0.36 -4.11 16 17 C -0.20 -4.74 9.74 -39.25 -0.38 -5.12 16 18 C 0.09 2.37 5.53 -106.80 -0.59 1.78 16 19 C -0.47 -12.34 9.03 -37.83 -0.34 -12.68 16 20 H 0.08 1.91 7.89 -52.48 -0.41 1.50 16 21 C 0.07 1.87 5.16 -17.34 -0.09 1.78 16 22 N -0.80 -20.86 11.07 55.54 0.62 -20.25 16 23 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 C -0.13 -3.33 8.61 -39.25 -0.34 -3.67 16 28 C -0.12 -2.91 9.92 -39.83 -0.40 -3.30 16 29 H 0.06 0.38 6.59 -51.93 -0.34 0.04 16 30 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 31 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.42 7.91 -51.93 -0.41 0.00 16 37 H 0.09 0.83 5.99 -51.93 -0.31 0.52 16 38 H 0.09 0.71 5.45 -51.93 -0.28 0.43 16 39 H 0.05 0.41 8.10 -51.93 -0.42 -0.01 16 40 H 0.37 3.62 9.05 45.56 0.41 4.03 16 41 H 0.06 0.79 7.64 -51.93 -0.40 0.39 16 42 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 43 H 0.09 1.73 6.27 -52.49 -0.33 1.41 16 44 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 45 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 46 H 0.12 3.26 6.36 -52.48 -0.33 2.93 16 47 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -29.58 381.96 -11.37 -40.95 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.48 Total: 8.46 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -2.12 Total: -23.91 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: -0.33 Total: -25.86 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.77 Total: -14.04 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.41 Total: -5.03 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.58 -11.37 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408512955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.733 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds