Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.34513 * 2 1 4 4 C 1.53250 * 109.40803 * 119.80990 * 2 1 3 5 5 S 1.81903 * 108.50672 * 182.12405 * 4 2 1 6 6 C 1.81897 * 101.90985 * 308.68740 * 5 4 2 7 7 C 1.53251 * 108.50704 * 51.30807 * 6 5 4 8 8 N 1.46464 * 109.85705 * 297.99474 * 7 6 5 9 9 C 1.46901 * 110.99935 * 197.76378 * 8 7 6 10 10 C 1.52998 * 109.47029 * 77.00820 * 9 8 7 11 11 H 1.08997 * 109.46900 * 53.45295 * 10 9 8 12 12 O 1.42901 * 109.47398 * 293.44455 * 10 9 8 13 13 C 1.53007 * 109.46947 * 173.44658 * 10 9 8 14 14 O 1.42901 * 109.46719 * 184.99952 * 13 10 9 15 15 C 1.35680 * 116.99614 * 179.97438 * 14 13 10 16 16 C 1.39309 * 119.81672 * 359.72790 * 15 14 13 17 17 C 1.36437 * 120.18062 * 179.75731 * 16 15 14 18 18 C 1.40835 * 119.81153 * 0.51392 * 17 16 15 19 19 C 1.41214 * 120.17706 * 179.76242 * 18 17 16 20 20 H 1.08001 * 120.00336 * 205.52105 * 19 18 17 21 21 C 1.39894 * 120.00097 * 25.51733 * 19 18 17 22 22 N 1.30876 * 119.99837 * 16.95756 * 21 19 18 23 23 Si 1.86805 * 120.00009 * 196.95503 * 21 19 18 24 24 H 1.48506 * 109.46981 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47107 * 120.00081 * 23 21 19 26 26 H 1.48500 * 109.47059 * 240.00200 * 23 21 19 27 27 C 1.40827 * 119.64346 * 359.74391 * 18 17 16 28 28 C 1.36437 * 119.81349 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.46770 * 171.13880 * 1 2 3 30 30 H 1.09001 * 109.46628 * 291.13754 * 1 2 3 31 31 H 1.09003 * 109.46843 * 51.13847 * 1 2 3 32 32 H 1.08998 * 109.63805 * 62.41095 * 4 2 1 33 33 H 1.09008 * 109.79117 * 301.92092 * 4 2 1 34 34 H 1.09000 * 109.63210 * 291.59917 * 6 5 4 35 35 H 1.09001 * 109.62704 * 171.01553 * 6 5 4 36 36 H 1.08997 * 109.40680 * 177.87630 * 7 6 5 37 37 H 1.09004 * 109.33807 * 58.07414 * 7 6 5 38 38 H 1.09000 * 109.46888 * 317.01309 * 9 8 7 39 39 H 1.08992 * 109.47521 * 197.01227 * 9 8 7 40 40 H 0.96695 * 114.00167 * 300.00237 * 12 10 9 41 41 H 1.08996 * 109.47242 * 305.00211 * 13 10 9 42 42 H 1.08994 * 109.47232 * 65.00600 * 13 10 9 43 43 H 1.07994 * 119.90932 * 359.97438 * 16 15 14 44 44 H 1.08000 * 120.09313 * 180.25701 * 17 16 15 45 45 H 0.97006 * 119.99662 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.09355 * 180.02562 * 27 18 17 47 47 H 1.07995 * 119.91227 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8911 1.0285 0.0000 4 6 2.0392 -0.7185 1.2542 5 16 3.8569 -0.6490 1.2615 6 6 4.2629 -1.2665 -0.4007 7 6 3.4475 -0.4726 -1.4271 8 7 2.0167 -0.6866 -1.1988 9 6 1.2320 -0.3032 -2.3800 10 6 1.3482 -1.3949 -3.4457 11 1 1.0773 -2.3571 -3.0111 12 8 2.6929 -1.4507 -3.9260 13 6 0.4045 -1.0762 -4.6072 14 8 0.4260 -2.1523 -5.5473 15 6 -0.3624 -2.0274 -6.6444 16 6 -1.1473 -0.8881 -6.8073 17 6 -1.9391 -0.7525 -7.9102 18 6 -1.9696 -1.7734 -8.8799 19 6 -2.7901 -1.6434 -10.0219 20 1 -3.1426 -2.5249 -10.5368 21 6 -3.1464 -0.3728 -10.4862 22 7 -2.4764 0.6799 -10.0914 23 14 -4.5784 -0.1786 -11.6700 24 1 -5.1654 -1.5116 -11.9597 25 1 -5.6113 0.6954 -11.0581 26 1 -4.0964 0.4347 -12.9336 27 6 -1.1771 -2.9243 -8.7049 28 6 -0.3864 -3.0417 -7.5992 29 1 -0.3633 -1.0154 -0.1583 30 1 -0.3632 0.3706 0.9586 31 1 -0.3633 0.6448 -0.8002 32 1 1.7125 -1.7583 1.2387 33 1 1.6504 -0.2258 2.1454 34 1 4.0092 -2.3243 -0.4704 35 1 5.3270 -1.1288 -0.5926 36 1 3.7077 -0.8054 -2.4319 37 1 3.6757 0.5885 -1.3265 38 1 1.6129 0.6366 -2.7798 39 1 0.1865 -0.1809 -2.0977 40 1 3.0019 -0.6267 -4.3268 41 1 -0.6086 -0.9459 -4.2270 42 1 0.7292 -0.1587 -5.0979 43 1 -1.1264 -0.1084 -6.0604 44 1 -2.5439 0.1332 -8.0371 45 1 -2.7237 1.5610 -10.4131 46 1 -1.1946 -3.7114 -9.4442 47 1 0.2222 -3.9234 -7.4635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408512957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -58.752327 kcal Electronic energy + Delta-G solvation = -26611.855395 eV Core-core repulsion = 22886.002611 eV Total energy + Delta-G solvation = -3725.852785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.74032 -38.73521 -37.07587 -35.99420 -33.37340 -33.09381 -31.96814 -29.80161 -29.58018 -28.66311 -27.71259 -25.46026 -24.43847 -23.04192 -22.08517 -20.94550 -20.65002 -20.24606 -17.39146 -17.16689 -17.10611 -16.73887 -16.43516 -16.06773 -15.29327 -15.20432 -14.96317 -14.67659 -14.16322 -14.07470 -13.94906 -13.69913 -13.30521 -13.10898 -12.80303 -12.66563 -12.49932 -12.43633 -12.36710 -12.04080 -11.87989 -11.77025 -11.52843 -11.39215 -11.23138 -11.16517 -11.00333 -10.77508 -10.62239 -10.19215 -9.95997 -9.81170 -9.69386 -9.39401 -9.05235 -8.69825 -7.97870 -7.69046 -7.03374 -6.75217 -4.28319 1.50406 2.22882 2.73085 2.93157 3.06530 3.11874 3.17685 3.20626 3.92743 3.95163 4.26066 4.38344 4.50868 4.59227 4.67646 4.76387 4.84313 4.90331 4.98960 5.02073 5.07695 5.15944 5.22443 5.29245 5.32327 5.43471 5.56726 5.57927 5.63361 5.64840 5.68690 5.79657 6.02407 6.06102 6.25513 6.62086 6.69342 6.73361 6.86030 7.04098 7.25021 7.37347 7.52576 7.54863 7.86703 7.97565 8.12354 8.41516 8.62217 8.87660 8.96120 10.19851 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.027436 B = 0.001953 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.316261 B =14331.150927 C =14830.156629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.081 3.919 3 H 0.054 0.946 4 C -0.067 4.067 5 S -0.287 6.287 6 C -0.068 4.068 7 C 0.039 3.961 8 N -0.539 5.539 9 C 0.020 3.980 10 C 0.118 3.882 11 H 0.113 0.887 12 O -0.546 6.546 13 C 0.039 3.961 14 O -0.318 6.318 15 C -0.009 4.009 16 C -0.175 4.175 17 C -0.133 4.133 18 C 0.087 3.913 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.802 5.802 23 Si 0.907 3.093 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.275 1.275 27 C -0.194 4.194 28 C -0.113 4.113 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.369 0.631 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.278 0.722 46 H 0.100 0.900 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 2.458 18.784 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.029 4.029 3 H 0.072 0.928 4 C -0.215 4.215 5 S -0.060 6.060 6 C -0.217 4.217 7 C -0.090 4.090 8 N -0.264 5.264 9 C -0.108 4.108 10 C 0.058 3.942 11 H 0.131 0.869 12 O -0.351 6.351 13 C -0.038 4.038 14 O -0.233 6.233 15 C -0.052 4.052 16 C -0.194 4.194 17 C -0.152 4.152 18 C 0.084 3.916 19 C -0.493 4.493 20 H 0.096 0.904 21 C -0.142 4.142 22 N -0.428 5.428 23 Si 0.731 3.269 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.201 1.201 27 C -0.214 4.214 28 C -0.131 4.131 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.117 0.883 40 H 0.216 0.784 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.245 1.782 19.938 21.649 hybrid contribution -1.407 1.564 -1.753 2.738 sum 6.838 3.346 18.185 19.714 Atomic orbital electron populations 1.22071 0.93519 1.03270 1.02386 1.21788 0.95804 0.95724 0.89571 0.92843 1.23546 0.92828 1.04866 1.00294 1.86914 1.08456 1.87057 1.23539 1.23501 1.02802 1.03269 0.92104 1.22679 0.86621 0.98044 1.01632 1.61054 1.03365 1.59401 1.02567 1.22869 1.00144 0.96792 0.90974 1.21953 0.81522 1.00250 0.90438 0.86889 1.86613 1.28377 1.40484 1.79582 1.23086 0.99425 0.90849 0.90438 1.85868 1.64244 1.41933 1.31287 1.18595 0.99451 0.97421 0.89736 1.20585 1.01901 0.96757 1.00169 1.20930 1.00770 1.00950 0.92597 1.17607 0.90671 0.90877 0.92413 1.19501 1.26932 0.92792 1.10045 0.90448 1.25876 0.96243 0.95560 0.96560 1.69842 1.34577 0.99906 1.38521 0.86286 0.81301 0.79419 0.79847 1.18435 1.19818 1.20078 1.20619 1.01437 1.00940 0.98415 1.19627 1.01990 0.97104 0.94426 0.91038 0.91576 0.91665 0.88959 0.87687 0.88885 0.87626 0.86400 0.94052 0.93724 0.88286 0.78371 0.92387 0.92985 0.88962 0.86179 0.91093 0.88168 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.02 37.16 0.30 -0.73 16 2 C 0.08 0.64 2.49 -67.81 -0.17 0.48 16 3 H 0.05 0.46 7.91 -51.93 -0.41 0.05 16 4 C -0.07 -0.53 5.95 37.29 0.22 -0.31 16 5 S -0.29 -2.77 22.40 -107.50 -2.41 -5.17 16 6 C -0.07 -0.60 6.69 37.29 0.25 -0.35 16 7 C 0.04 0.34 5.21 -3.93 -0.02 0.32 16 8 N -0.54 -4.85 4.23 -227.04 -0.96 -5.81 16 9 C 0.02 0.18 4.51 -3.82 -0.02 0.16 16 10 C 0.12 1.38 3.47 -26.73 -0.09 1.29 16 11 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 12 O -0.55 -6.56 10.56 -40.09 -0.42 -6.98 16 13 C 0.04 0.58 4.36 37.16 0.16 0.74 16 14 O -0.32 -6.32 10.09 -23.60 -0.24 -6.56 16 15 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 16 C -0.18 -4.02 8.96 -39.83 -0.36 -4.37 16 17 C -0.13 -3.40 8.63 -39.25 -0.34 -3.74 16 18 C 0.09 2.29 5.57 -106.81 -0.59 1.70 16 19 C -0.46 -12.18 9.04 -37.83 -0.34 -12.52 16 20 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 21 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 22 N -0.80 -20.56 10.97 55.54 0.61 -19.95 16 23 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 27 C -0.19 -4.77 9.74 -39.25 -0.38 -5.16 16 28 C -0.11 -2.62 9.92 -39.83 -0.40 -3.01 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.06 0.43 6.48 -51.93 -0.34 0.09 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.12 1.07 4.82 -51.93 -0.25 0.82 16 37 H 0.04 0.37 7.91 -51.93 -0.41 -0.04 16 38 H 0.04 0.38 7.98 -51.93 -0.41 -0.04 16 39 H 0.10 0.82 5.00 -51.93 -0.26 0.56 16 40 H 0.37 3.31 8.83 45.56 0.40 3.71 16 41 H 0.06 0.81 7.63 -51.93 -0.40 0.42 16 42 H 0.05 0.74 7.66 -51.93 -0.40 0.35 16 43 H 0.09 1.85 6.27 -52.49 -0.33 1.52 16 44 H 0.12 3.15 6.20 -52.49 -0.33 2.83 16 45 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 46 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 47 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -29.22 379.56 -11.34 -40.56 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.48 Total: 8.91 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -2.13 Total: -24.22 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: -0.35 Total: -25.76 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.66 Total: -13.53 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.41 Total: -5.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.22 -11.34 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408512957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.189 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds