Wall clock time and date at job start Tue Mar 31 2020 05:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46960 * 222.09009 * 3 2 1 5 5 C 1.36940 * 119.99937 * 263.95580 * 4 3 2 6 6 H 1.08005 * 119.99580 * 201.09290 * 5 4 3 7 7 C 1.38803 * 120.00106 * 21.09169 * 5 4 3 8 8 N 1.31619 * 119.99998 * 15.40845 * 7 5 4 9 9 Si 1.86799 * 120.00221 * 195.40917 * 7 5 4 10 10 H 1.48506 * 109.47266 * 59.99695 * 9 7 5 11 11 H 1.48501 * 109.47421 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46910 * 300.00197 * 9 7 5 13 13 C 1.46500 * 119.99871 * 83.95453 * 4 3 2 14 14 C 1.50707 * 109.46889 * 270.00039 * 13 4 3 15 15 O 1.21284 * 120.00001 * 359.97438 * 14 13 4 16 16 N 1.34777 * 119.99625 * 180.02562 * 14 13 4 17 17 C 1.39961 * 119.99814 * 184.47051 * 16 14 13 18 18 C 1.38866 * 120.06303 * 146.26938 * 17 16 14 19 19 C 1.38106 * 119.93681 * 180.24907 * 18 17 16 20 20 C 1.38356 * 120.06174 * 359.47833 * 19 18 17 21 21 Br 1.89107 * 119.93734 * 180.27400 * 20 19 18 22 22 C 1.38355 * 120.12306 * 0.24761 * 20 19 18 23 23 C 1.38108 * 120.05949 * 0.02562 * 22 20 19 24 24 H 4.40644 * 5.51446 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47511 * 102.09064 * 3 2 1 26 26 H 1.09005 * 109.47661 * 342.08774 * 3 2 1 27 27 H 0.97003 * 120.00229 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47122 * 150.00039 * 13 4 3 29 29 H 1.09001 * 109.47613 * 29.99725 * 13 4 3 30 30 H 0.97001 * 120.00652 * 4.46697 * 16 14 13 31 31 H 1.07998 * 120.02702 * 0.02562 * 18 17 16 32 32 H 1.08005 * 119.96797 * 179.74693 * 19 18 17 33 33 H 1.07998 * 119.97183 * 180.02562 * 22 20 19 34 34 H 1.08007 * 120.03001 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0259 0.9259 5 6 3.4792 2.2647 0.4555 6 1 4.1396 2.8962 1.0314 7 6 2.9807 2.7089 -0.7614 8 7 1.9575 2.0950 -1.3169 9 14 3.7620 4.1777 -1.6108 10 1 5.1900 3.8842 -1.8937 11 1 3.0507 4.4483 -2.8860 12 1 3.6668 5.3682 -0.7281 13 6 3.2521 0.7258 2.3549 14 6 1.9603 1.0721 3.0495 15 8 1.0324 1.5254 2.4135 16 7 1.8365 0.8790 4.3776 17 6 0.6084 1.1117 5.0072 18 6 0.2224 0.3316 6.0892 19 6 -0.9924 0.5602 6.7052 20 6 -1.8196 1.5724 6.2521 21 35 -3.4788 1.8873 7.1031 22 6 -1.4351 2.3549 5.1779 23 6 -0.2239 2.1271 4.5545 24 1 -1.0502 -0.0001 -0.0004 25 1 3.0093 0.2161 -1.0048 26 1 3.0099 -0.9770 0.3161 27 1 1.6093 2.4051 -2.1676 28 1 4.0640 1.3133 2.7836 29 1 3.4625 -0.3355 2.4872 30 1 2.5986 0.5786 4.8972 31 1 0.8699 -0.4555 6.4462 32 1 -1.2949 -0.0490 7.5442 33 1 -2.0825 3.1446 4.8265 34 1 0.0761 2.7385 3.7162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408515757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:28 Heat of formation + Delta-G solvation = 90.693706 kcal Electronic energy + Delta-G solvation = -20382.586399 eV Core-core repulsion = 17136.962067 eV Total energy + Delta-G solvation = -3245.624332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 336.021 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.08932 -38.19041 -35.77651 -34.31520 -31.68077 -31.44704 -31.10487 -30.95519 -28.66820 -26.83505 -25.89139 -23.06960 -22.63375 -21.41440 -19.80547 -17.70481 -17.43014 -16.65937 -16.17341 -15.83057 -15.13196 -14.99773 -14.33431 -14.11640 -13.61497 -13.42990 -13.39235 -13.19886 -12.91515 -12.41999 -11.74619 -11.56927 -11.40491 -11.34051 -11.05114 -10.86688 -10.75451 -10.32616 -10.28727 -10.09424 -9.72165 -9.23367 -8.93523 -8.83008 -8.63844 -8.30718 -7.86281 -7.04262 -5.78951 -3.29544 1.16074 1.39000 1.67472 3.29058 3.33126 3.40126 3.42164 3.46895 3.82816 4.28693 4.50367 4.63226 4.81649 4.92997 5.27647 5.34082 5.43370 5.53071 5.55911 5.72689 5.93258 5.99997 6.01874 6.07049 6.14287 6.32645 6.45509 6.63088 6.69992 7.13956 7.22112 7.54040 7.67252 7.81650 8.23509 8.86148 9.05295 9.41622 9.68092 10.12534 11.21967 Molecular weight = 336.02amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.002908 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.182896 B = 9625.645962 C = 9904.583230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.095 4.095 3 C 0.271 3.729 4 N -0.556 5.556 5 C -0.274 4.274 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.877 5.877 9 Si 0.906 3.094 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.130 3.870 14 C 0.461 3.539 15 O -0.468 6.468 16 N -0.692 5.692 17 C 0.182 3.818 18 C -0.156 4.156 19 C -0.073 4.073 20 C -0.119 4.119 21 Br -0.067 7.067 22 C -0.070 4.070 23 C -0.120 4.120 24 H 0.183 0.817 25 H 0.099 0.901 26 H 0.034 0.966 27 H 0.256 0.744 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.404 0.596 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -4.527 17.414 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.097 4.097 3 C 0.147 3.853 4 N -0.273 5.273 5 C -0.403 4.403 6 H 0.092 0.908 7 C -0.188 4.188 8 N -0.518 5.518 9 Si 0.736 3.264 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.210 1.210 13 C -0.002 4.002 14 C 0.246 3.754 15 O -0.336 6.336 16 N -0.340 5.340 17 C 0.085 3.915 18 C -0.178 4.178 19 C -0.093 4.093 20 C -0.199 4.199 21 Br 0.017 6.983 22 C -0.090 4.090 23 C -0.142 4.142 24 H 0.200 0.800 25 H 0.117 0.883 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.239 0.761 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.346 -4.031 16.890 18.168 hybrid contribution 0.367 0.796 -0.283 0.921 sum -4.979 -3.235 16.607 17.636 Atomic orbital electron populations 1.23957 0.95127 1.06488 1.05105 1.23833 0.94921 0.94838 0.96139 1.17854 0.83273 0.88284 0.95919 1.44161 1.72651 1.11936 0.98502 1.19122 1.23123 0.94337 1.03746 0.90770 1.25077 0.95818 0.98137 0.99718 1.70079 1.21956 1.41508 1.18282 0.86331 0.78719 0.82458 0.78917 1.20815 1.21602 1.20964 1.21169 0.92374 0.99897 0.86806 1.24066 0.93753 0.77741 0.79867 1.90756 1.40037 1.38868 1.63968 1.44528 1.10468 1.69113 1.09913 1.18097 0.88102 0.92820 0.92495 1.20879 0.97414 1.00654 0.98822 1.20780 0.93093 0.96104 0.99367 1.21604 0.94094 1.02981 1.01241 1.96636 1.26101 1.96163 1.79351 1.21023 0.96358 0.98295 0.93357 1.21482 0.94216 0.97331 1.01124 0.79955 0.88314 0.94821 0.93360 0.90076 0.90916 0.76109 0.85172 0.85221 0.85152 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.09 18.77 29.55 0.55 -6.54 16 2 C -0.09 -2.37 9.88 -37.13 -0.37 -2.74 16 3 C 0.27 6.31 5.45 -6.83 -0.04 6.28 16 4 N -0.56 -12.94 2.09 -177.94 -0.37 -13.31 16 5 C -0.27 -7.11 9.67 -15.06 -0.15 -7.25 16 6 H 0.07 1.86 7.86 -52.48 -0.41 1.45 16 7 C 0.01 0.36 4.99 -17.43 -0.09 0.28 16 8 N -0.88 -24.89 9.25 55.49 0.51 -24.38 16 9 Si 0.91 21.23 29.58 -169.99 -5.03 16.20 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.13 2.34 6.18 -5.19 -0.03 2.31 16 14 C 0.46 8.74 7.65 -10.98 -0.08 8.66 16 15 O -0.47 -11.24 11.79 5.55 0.07 -11.17 16 16 N -0.69 -9.91 5.34 -9.85 -0.05 -9.97 16 17 C 0.18 2.71 6.32 -83.68 -0.53 2.19 16 18 C -0.16 -1.89 9.96 -39.40 -0.39 -2.28 16 19 C -0.07 -0.87 9.78 -39.59 -0.39 -1.26 16 20 C -0.12 -1.58 6.22 -39.49 -0.25 -1.82 16 21 Br -0.07 -0.78 33.70 -68.01 -2.29 -3.08 16 22 C -0.07 -1.02 9.78 -39.59 -0.39 -1.41 16 23 C -0.12 -2.00 8.70 -39.40 -0.34 -2.35 16 24 H 0.18 4.01 7.80 -54.08 -0.42 3.59 16 25 H 0.10 2.49 6.50 -51.93 -0.34 2.15 16 26 H 0.03 0.67 7.98 -51.93 -0.41 0.25 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 29 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 30 H 0.40 4.11 8.82 -40.82 -0.36 3.75 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.15 2.96 6.15 -52.48 -0.32 2.64 16 LS Contribution 320.00 15.07 4.82 4.82 Total: -1.00 -32.17 320.00 -8.33 -40.50 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.50 Total: 6.33 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.48 Total: -5.95 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.09 Total: -47.65 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -2.29 Total: -3.08 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.17 -8.33 -40.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408515757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.192 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds