Wall clock time and date at job start Tue Mar 31 2020 05:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48495 * 109.47271 * 271.31104 * 3 2 1 5 5 H 1.48499 * 109.46900 * 31.31282 * 3 2 1 6 6 H 1.48501 * 109.46948 * 151.30627 * 3 2 1 7 7 C 1.39901 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99885 * 358.31630 * 7 2 1 9 9 C 1.41144 * 120.00028 * 178.31635 * 7 2 1 10 10 C 1.40900 * 120.15786 * 321.55543 * 9 7 2 11 11 C 1.36367 * 119.84861 * 179.97438 * 10 9 7 12 12 C 1.39468 * 120.18171 * 0.28528 * 11 10 9 13 13 N 1.39271 * 119.84191 * 179.72347 * 12 11 10 14 14 C 1.34775 * 119.99584 * 333.07066 * 13 12 11 15 15 O 1.21275 * 120.00314 * 4.95256 * 14 13 12 16 16 C 1.50706 * 119.99742 * 184.95695 * 14 13 12 17 17 H 1.08996 * 109.60206 * 96.05195 * 16 14 13 18 18 C 1.52982 * 109.60283 * 216.38118 * 16 14 13 19 19 C 1.51783 * 110.88398 * 33.28951 * 18 16 14 20 20 C 1.51788 * 113.80615 * 66.99635 * 19 18 16 21 21 C 1.53061 * 110.74824 * 293.18870 * 20 19 18 22 22 C 1.51427 * 108.49282 * 84.92617 * 21 20 19 23 23 O 1.21278 * 119.89738 * 108.80276 * 22 21 20 24 24 N 1.33367 * 120.20919 * 288.77755 * 22 21 20 25 25 C 1.39586 * 120.32069 * 359.43928 * 12 11 10 26 26 Cl 1.73599 * 119.92619 * 180.26318 * 25 12 11 27 27 C 1.36475 * 120.14290 * 0.55393 * 25 12 11 28 28 H 0.96996 * 120.00013 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.07531 * 359.96308 * 10 9 7 30 30 H 1.08003 * 119.91110 * 180.02562 * 11 10 9 31 31 H 0.97001 * 120.00006 * 153.07137 * 13 12 11 32 32 H 1.09000 * 109.19973 * 153.65447 * 18 16 14 33 33 H 1.09008 * 109.19557 * 272.97492 * 18 16 14 34 34 H 1.08990 * 108.61817 * 188.11373 * 19 18 16 35 35 H 1.09003 * 108.61243 * 305.88248 * 19 18 16 36 36 H 1.09005 * 109.22383 * 53.51581 * 20 19 18 37 37 H 1.09003 * 109.22127 * 172.90577 * 20 19 18 38 38 H 1.09003 * 109.63289 * 204.62275 * 21 20 19 39 39 H 1.08999 * 109.63470 * 325.01912 * 21 20 19 40 40 H 0.97006 * 119.78666 * 179.72508 * 24 22 21 41 41 H 1.08001 * 120.08796 * 179.74734 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4625 2.0625 -1.3996 5 1 1.4543 2.6444 0.7276 6 1 3.5538 1.4323 0.6722 7 6 2.0083 -1.2116 -0.0005 8 1 1.4687 -2.1467 0.0265 9 6 3.4193 -1.2118 -0.0365 10 6 4.1074 -0.2686 -0.8252 11 6 5.4708 -0.2742 -0.8548 12 6 6.1844 -1.2141 -0.1116 13 7 7.5766 -1.2171 -0.1516 14 6 8.2204 -0.7448 -1.2373 15 8 7.5923 -0.2352 -2.1410 16 6 9.7210 -0.8500 -1.3285 17 1 9.9913 -1.7390 -1.8983 18 6 10.2817 0.3936 -2.0209 19 6 9.4484 1.6186 -1.6908 20 6 9.5272 2.0389 -0.2344 21 6 8.8795 0.9870 0.6693 22 6 9.9075 -0.0818 0.9757 23 8 10.3812 -0.1635 2.0891 24 7 10.2934 -0.9339 0.0250 25 6 5.5103 -2.1482 0.6767 26 17 6.4090 -3.3092 1.6030 27 6 4.1461 -2.1545 0.7162 28 1 -0.4850 0.8400 0.0004 29 1 3.5564 0.4570 -1.4052 30 1 5.9993 0.4486 -1.4588 31 1 8.0827 -1.5590 0.6019 32 1 11.3068 0.5574 -1.6888 33 1 10.2753 0.2368 -3.0996 34 1 9.7881 2.4479 -2.3111 35 1 8.4075 1.4078 -1.9363 36 1 10.5730 2.1598 0.0482 37 1 9.0088 2.9892 -0.1066 38 1 8.5495 1.4544 1.5971 39 1 8.0250 0.5421 0.1593 40 1 10.9553 -1.6136 0.2270 41 1 3.6254 -2.8802 1.3233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408519962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:36 Heat of formation + Delta-G solvation = -33.814103 kcal Electronic energy + Delta-G solvation = -27831.029101 eV Core-core repulsion = 23930.266486 eV Total energy + Delta-G solvation = -3900.762616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84878 -39.33447 -38.11605 -36.29378 -35.92995 -35.04536 -34.16491 -33.25385 -31.20495 -29.99681 -29.93120 -27.31075 -25.28779 -24.42445 -22.32553 -22.16778 -20.83507 -20.35604 -19.46687 -17.92170 -17.77740 -17.65273 -17.25416 -15.98580 -15.58530 -15.38474 -15.04084 -14.50924 -14.32151 -14.28806 -14.19661 -13.82528 -13.55886 -13.07332 -12.95119 -12.82905 -12.79838 -12.60506 -12.46970 -11.84769 -11.72631 -11.24816 -11.22682 -11.10477 -10.98674 -10.70772 -10.61521 -10.44266 -10.20953 -10.00049 -9.92938 -9.74348 -9.62972 -9.19102 -9.04060 -7.93361 -7.35241 -7.00144 -4.64251 1.91216 2.32392 2.41596 2.61496 2.73711 2.96599 3.04428 3.13839 3.21158 3.23323 3.87844 4.27791 4.29880 4.35463 4.50573 4.66754 4.81037 4.94472 5.06762 5.09689 5.33329 5.47664 5.55566 5.74761 5.76220 5.80714 5.94165 5.99493 6.03523 6.15456 6.36529 6.39564 6.48978 6.54136 6.80280 6.85481 6.99768 7.08845 7.24050 7.60674 7.64225 7.70806 7.99496 8.16026 8.19312 8.38037 8.60517 9.99971 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.004522 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.275086 B = 6191.018143 C = 7156.509133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.081 3.919 3 Si 0.906 3.094 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.238 1.238 7 C -0.438 4.438 8 H 0.095 0.905 9 C 0.094 3.906 10 C -0.211 4.211 11 C -0.069 4.069 12 C 0.004 3.996 13 N -0.647 5.647 14 C 0.500 3.500 15 O -0.509 6.509 16 C 0.124 3.876 17 H 0.128 0.872 18 C -0.114 4.114 19 C -0.156 4.156 20 C -0.107 4.107 21 C -0.185 4.185 22 C 0.520 3.480 23 O -0.542 6.542 24 N -0.725 5.725 25 C -0.005 4.005 26 Cl -0.109 7.109 27 C -0.179 4.179 28 H 0.287 0.713 29 H 0.109 0.891 30 H 0.138 0.862 31 H 0.403 0.597 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.405 0.595 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.466 1.322 -3.125 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.161 1.161 7 C -0.467 4.467 8 H 0.113 0.887 9 C 0.091 3.909 10 C -0.230 4.230 11 C -0.089 4.089 12 C -0.090 4.090 13 N -0.292 5.292 14 C 0.288 3.712 15 O -0.386 6.386 16 C 0.016 3.984 17 H 0.146 0.854 18 C -0.153 4.153 19 C -0.193 4.193 20 C -0.145 4.145 21 C -0.225 4.225 22 C 0.308 3.692 23 O -0.419 6.419 24 N -0.381 5.381 25 C -0.033 4.033 26 Cl -0.081 7.081 27 C -0.200 4.200 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.155 0.845 31 H 0.240 0.760 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.242 0.758 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.928 1.767 -3.144 17.308 hybrid contribution 0.792 0.018 0.505 0.940 sum 17.720 1.785 -2.639 18.004 Atomic orbital electron populations 1.69611 1.07833 1.30376 1.35763 1.26113 0.94967 1.01462 0.91148 0.86409 0.81109 0.79662 0.79552 1.19347 1.21752 1.16077 1.19436 0.89486 0.95419 1.42359 0.88700 1.17722 0.93928 0.90490 0.88798 1.20858 0.93619 1.04570 1.03976 1.20743 0.93941 0.96427 0.97752 1.16878 0.80791 1.02094 1.09240 1.43403 1.06093 1.61157 1.18553 1.20392 0.89669 0.79223 0.81959 1.90612 1.67090 1.42382 1.38515 1.21640 0.90155 1.02332 0.84285 0.85445 1.21561 0.99624 0.93031 1.01100 1.21643 1.04388 0.97415 0.95896 1.21171 1.00822 0.98121 0.94390 1.22889 0.99283 0.96366 1.03964 1.20734 0.82680 0.81920 0.83895 1.90757 1.56996 1.72202 1.21922 1.46058 1.45309 1.35762 1.10938 1.20256 0.92184 0.92340 0.98547 1.98287 1.76232 1.59830 1.73721 1.20660 0.90060 1.05085 1.04170 0.90204 0.87374 0.84505 0.75963 0.90542 0.89561 0.91440 0.87974 0.92063 0.90515 0.88261 0.85950 0.75818 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.85 13.93 55.55 0.77 -20.08 16 2 C 0.08 2.04 5.51 -17.34 -0.10 1.94 16 3 Si 0.91 19.68 24.45 -169.99 -4.16 15.53 16 4 H -0.27 -5.64 6.86 56.52 0.39 -5.25 16 5 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.24 -5.20 6.26 56.52 0.35 -4.85 16 7 C -0.44 -11.16 9.60 -37.86 -0.36 -11.52 16 8 H 0.10 2.54 8.06 -52.49 -0.42 2.11 16 9 C 0.09 2.23 5.08 -106.80 -0.54 1.68 16 10 C -0.21 -4.73 6.66 -39.25 -0.26 -4.99 16 11 C -0.07 -1.41 8.67 -39.80 -0.34 -1.76 16 12 C 0.00 0.07 6.25 -83.52 -0.52 -0.45 16 13 N -0.65 -9.99 3.14 -9.71 -0.03 -10.02 16 14 C 0.50 6.86 4.07 -10.98 -0.04 6.82 16 15 O -0.51 -8.23 11.03 5.56 0.06 -8.17 16 16 C 0.12 1.16 3.80 -68.71 -0.26 0.90 16 17 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.11 -0.96 5.34 -27.36 -0.15 -1.11 16 19 C -0.16 -1.60 5.16 -27.96 -0.14 -1.74 16 20 C -0.11 -1.15 5.66 -27.31 -0.15 -1.30 16 21 C -0.18 -2.40 5.31 -27.49 -0.15 -2.55 16 22 C 0.52 6.84 5.49 -11.25 -0.06 6.78 16 23 O -0.54 -9.02 17.92 5.56 0.10 -8.92 16 24 N -0.72 -7.05 4.62 -54.57 -0.25 -7.30 16 25 C -0.01 -0.10 6.30 -39.71 -0.25 -0.35 16 26 Cl -0.11 -1.84 27.77 -51.86 -1.44 -3.28 16 27 C -0.18 -3.89 9.50 -39.23 -0.37 -4.27 16 28 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 29 H 0.11 2.42 4.65 -52.49 -0.24 2.17 16 30 H 0.14 2.68 5.56 -52.48 -0.29 2.39 16 31 H 0.40 5.89 5.74 -40.82 -0.23 5.66 16 32 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 33 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 1.31 4.78 -51.93 -0.25 1.06 16 36 H 0.06 0.62 7.86 -51.93 -0.41 0.21 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 39 H 0.12 1.78 3.19 -51.93 -0.17 1.61 16 40 H 0.40 3.13 8.91 -40.82 -0.36 2.77 16 41 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -28.21 329.36 -8.22 -36.43 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.53 Total: 12.76 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -3.71 Total: -11.91 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.49 Total: -37.40 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.16 Total: -17.09 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.16 Total: 15.53 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -1.44 Total: -3.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.21 -8.22 -36.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408519962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.614 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds