Wall clock time and date at job start Tue Mar 31 2020 05:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48495 * 109.47271 * 271.31104 * 3 2 1 5 5 H 1.48499 * 109.46900 * 31.31282 * 3 2 1 6 6 H 1.48501 * 109.46948 * 151.30627 * 3 2 1 7 7 C 1.39901 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99885 * 358.31630 * 7 2 1 9 9 C 1.41144 * 120.00028 * 178.31635 * 7 2 1 10 10 C 1.40900 * 120.15786 * 321.55543 * 9 7 2 11 11 C 1.36367 * 119.84861 * 179.97438 * 10 9 7 12 12 C 1.39468 * 120.18171 * 0.28528 * 11 10 9 13 13 N 1.39271 * 119.84191 * 179.72347 * 12 11 10 14 14 C 1.34775 * 119.99584 * 333.07066 * 13 12 11 15 15 O 1.21275 * 120.00314 * 4.95256 * 14 13 12 16 16 C 1.50706 * 119.99742 * 184.95695 * 14 13 12 17 17 H 1.08996 * 109.60206 * 96.05195 * 16 14 13 18 18 C 1.52982 * 109.60283 * 216.38118 * 16 14 13 19 19 C 1.51783 * 110.88398 * 33.28951 * 18 16 14 20 20 C 1.51788 * 113.80615 * 66.99635 * 19 18 16 21 21 C 1.53061 * 110.74824 * 293.18870 * 20 19 18 22 22 C 1.51427 * 108.49282 * 84.92617 * 21 20 19 23 23 O 1.21278 * 119.89738 * 108.80276 * 22 21 20 24 24 N 1.33367 * 120.20919 * 288.77755 * 22 21 20 25 25 C 1.39586 * 120.32069 * 359.43928 * 12 11 10 26 26 Cl 1.73599 * 119.92619 * 180.26318 * 25 12 11 27 27 C 1.36475 * 120.14290 * 0.55393 * 25 12 11 28 28 H 0.96996 * 120.00013 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.07531 * 359.96308 * 10 9 7 30 30 H 1.08003 * 119.91110 * 180.02562 * 11 10 9 31 31 H 0.97001 * 120.00006 * 153.07137 * 13 12 11 32 32 H 1.09000 * 109.19973 * 153.65447 * 18 16 14 33 33 H 1.09008 * 109.19557 * 272.97492 * 18 16 14 34 34 H 1.08990 * 108.61817 * 188.11373 * 19 18 16 35 35 H 1.09003 * 108.61243 * 305.88248 * 19 18 16 36 36 H 1.09005 * 109.22383 * 53.51581 * 20 19 18 37 37 H 1.09003 * 109.22127 * 172.90577 * 20 19 18 38 38 H 1.09003 * 109.63289 * 204.62275 * 21 20 19 39 39 H 1.08999 * 109.63470 * 325.01912 * 21 20 19 40 40 H 0.97006 * 119.78666 * 179.72508 * 24 22 21 41 41 H 1.08001 * 120.08796 * 179.74734 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4625 2.0625 -1.3996 5 1 1.4543 2.6444 0.7276 6 1 3.5538 1.4323 0.6722 7 6 2.0083 -1.2116 -0.0005 8 1 1.4687 -2.1467 0.0265 9 6 3.4193 -1.2118 -0.0365 10 6 4.1074 -0.2686 -0.8252 11 6 5.4708 -0.2742 -0.8548 12 6 6.1844 -1.2141 -0.1116 13 7 7.5766 -1.2171 -0.1516 14 6 8.2204 -0.7448 -1.2373 15 8 7.5923 -0.2352 -2.1410 16 6 9.7210 -0.8500 -1.3285 17 1 9.9913 -1.7390 -1.8983 18 6 10.2817 0.3936 -2.0209 19 6 9.4484 1.6186 -1.6908 20 6 9.5272 2.0389 -0.2344 21 6 8.8795 0.9870 0.6693 22 6 9.9075 -0.0818 0.9757 23 8 10.3812 -0.1635 2.0891 24 7 10.2934 -0.9339 0.0250 25 6 5.5103 -2.1482 0.6767 26 17 6.4090 -3.3092 1.6030 27 6 4.1461 -2.1545 0.7162 28 1 -0.4850 0.8400 0.0004 29 1 3.5564 0.4570 -1.4052 30 1 5.9993 0.4486 -1.4588 31 1 8.0827 -1.5590 0.6019 32 1 11.3068 0.5574 -1.6888 33 1 10.2753 0.2368 -3.0996 34 1 9.7881 2.4479 -2.3111 35 1 8.4075 1.4078 -1.9363 36 1 10.5730 2.1598 0.0482 37 1 9.0088 2.9892 -0.1066 38 1 8.5495 1.4544 1.5971 39 1 8.0250 0.5421 0.1593 40 1 10.9553 -1.6136 0.2270 41 1 3.6254 -2.8802 1.3233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408519962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:35 Heat of formation + Delta-G solvation = -51.989071 kcal Electronic energy + Delta-G solvation = -27831.817227 eV Core-core repulsion = 23930.266486 eV Total energy + Delta-G solvation = -3901.550741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.93970 -40.60143 -39.58296 -37.47718 -37.34425 -36.42352 -35.23600 -34.83013 -32.14072 -31.68442 -31.56252 -28.39332 -26.72322 -25.41705 -23.86549 -23.57220 -22.25694 -21.30040 -20.62864 -19.54350 -18.91656 -18.83083 -18.53904 -17.33729 -16.88048 -16.60121 -16.18416 -16.12408 -15.81885 -15.38103 -15.17229 -14.89461 -14.73555 -14.71246 -14.53187 -14.31942 -14.02237 -13.66788 -13.62271 -13.43671 -12.96622 -12.74103 -12.69718 -12.30861 -12.12411 -12.02030 -11.87393 -11.75044 -11.68128 -11.51638 -11.31695 -10.99821 -10.82667 -10.76124 -10.18840 -9.60654 -9.00878 -8.81923 -6.53710 0.34943 0.60145 1.15850 1.25668 1.34892 1.39062 1.44061 1.47776 1.96911 2.10515 2.15484 2.53353 3.24935 3.32604 3.38849 3.70965 3.84099 3.98890 4.08170 4.09933 4.26955 4.34918 4.47621 4.63502 4.66238 4.68754 4.81388 4.88704 4.95659 5.01186 5.09032 5.15150 5.23071 5.32375 5.34320 5.47937 5.62097 5.71599 5.80707 5.92498 5.98810 6.26219 6.33785 6.54616 6.73608 6.99417 7.05705 8.22156 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.004522 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.275086 B = 6191.018143 C = 7156.509133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.046 3.954 3 Si 0.955 3.045 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.242 1.242 7 C -0.475 4.475 8 H 0.061 0.939 9 C 0.077 3.923 10 C -0.212 4.212 11 C -0.078 4.078 12 C 0.037 3.963 13 N -0.652 5.652 14 C 0.501 3.499 15 O -0.527 6.527 16 C 0.133 3.867 17 H 0.170 0.830 18 C -0.112 4.112 19 C -0.157 4.157 20 C -0.104 4.104 21 C -0.187 4.187 22 C 0.522 3.478 23 O -0.581 6.581 24 N -0.707 5.707 25 C -0.017 4.017 26 Cl -0.077 7.077 27 C -0.183 4.183 28 H 0.293 0.707 29 H 0.107 0.893 30 H 0.151 0.849 31 H 0.409 0.591 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.419 0.581 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.799 1.638 -4.165 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.167 4.167 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.074 3.926 10 C -0.232 4.232 11 C -0.098 4.098 12 C -0.058 4.058 13 N -0.298 5.298 14 C 0.291 3.709 15 O -0.404 6.404 16 C 0.025 3.975 17 H 0.187 0.813 18 C -0.151 4.151 19 C -0.194 4.194 20 C -0.142 4.142 21 C -0.228 4.228 22 C 0.310 3.690 23 O -0.461 6.461 24 N -0.362 5.362 25 C -0.045 4.045 26 Cl -0.048 7.048 27 C -0.204 4.204 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.168 0.832 31 H 0.248 0.752 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.259 0.741 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 21.310 2.055 -4.220 21.821 hybrid contribution -0.220 -0.201 0.806 0.860 sum 21.090 1.854 -3.414 21.445 Atomic orbital electron populations 1.69655 1.08885 1.31271 1.38714 1.26711 0.95507 1.03776 0.90687 0.85665 0.79724 0.76668 0.80031 1.18127 1.20922 1.16551 1.19346 0.90540 0.94619 1.45984 0.92048 1.17766 0.93324 0.91819 0.89713 1.20950 0.94537 1.04119 1.03600 1.20932 0.93295 0.97155 0.98397 1.17025 0.82828 0.99774 1.06189 1.43497 1.04397 1.62039 1.19852 1.21257 0.91579 0.77399 0.80709 1.90617 1.68149 1.42565 1.39064 1.21851 0.86323 1.05018 0.84265 0.81269 1.21630 1.00053 0.91246 1.02148 1.21624 1.03201 0.99076 0.95480 1.21181 1.01104 0.97499 0.94409 1.22864 0.99024 0.97123 1.03800 1.20708 0.82392 0.82135 0.83773 1.90750 1.58462 1.73305 1.23568 1.45913 1.44777 1.35005 1.10544 1.20286 0.91916 0.93202 0.99122 1.98293 1.75176 1.58532 1.72825 1.20741 0.91122 1.04624 1.03871 0.89655 0.87512 0.83211 0.75230 0.88458 0.87720 0.89848 0.90566 0.91136 0.90236 0.89395 0.87387 0.74115 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.48 13.93 21.82 0.30 -46.18 16 2 C 0.05 2.43 5.51 85.24 0.47 2.90 16 3 Si 0.96 41.36 24.45 68.60 1.68 43.03 16 4 H -0.26 -10.48 6.86 99.48 0.68 -9.79 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.24 -10.48 6.26 99.48 0.62 -9.86 16 7 C -0.47 -25.64 9.60 23.39 0.22 -25.42 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 9 C 0.08 3.73 5.08 -21.28 -0.11 3.63 16 10 C -0.21 -9.54 6.66 22.49 0.15 -9.39 16 11 C -0.08 -3.10 8.67 22.13 0.19 -2.91 16 12 C 0.04 1.34 6.25 38.58 0.24 1.58 16 13 N -0.65 -18.30 3.14 -303.02 -0.95 -19.25 16 14 C 0.50 11.99 4.07 87.66 0.36 12.35 16 15 O -0.53 -15.43 11.03 -3.01 -0.03 -15.47 16 16 C 0.13 1.82 3.80 44.11 0.17 1.99 16 17 H 0.17 1.11 8.14 -2.39 -0.02 1.09 16 18 C -0.11 -1.31 5.34 30.19 0.16 -1.15 16 19 C -0.16 -2.62 5.16 29.80 0.15 -2.47 16 20 C -0.10 -1.93 5.66 30.22 0.17 -1.76 16 21 C -0.19 -4.48 5.31 30.10 0.16 -4.32 16 22 C 0.52 12.25 5.49 88.11 0.48 12.73 16 23 O -0.58 -18.18 17.92 -3.02 -0.05 -18.24 16 24 N -0.71 -10.75 4.62 -445.73 -2.06 -12.80 16 25 C -0.02 -0.64 6.30 22.18 0.14 -0.50 16 26 Cl -0.08 -2.43 27.77 -2.72 -0.08 -2.51 16 27 C -0.18 -8.04 9.50 22.49 0.21 -7.83 16 28 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 29 H 0.11 4.78 4.65 -2.91 -0.01 4.77 16 30 H 0.15 5.61 5.56 -2.91 -0.02 5.59 16 31 H 0.41 10.71 5.74 -92.71 -0.53 10.18 16 32 H 0.10 0.85 8.05 -2.39 -0.02 0.83 16 33 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.73 4.78 -2.39 -0.01 1.72 16 36 H 0.07 1.20 7.86 -2.38 -0.02 1.18 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 2.27 8.13 -2.39 -0.02 2.25 16 39 H 0.11 2.89 3.19 -2.39 -0.01 2.89 16 40 H 0.42 4.53 8.91 -92.70 -0.83 3.71 16 41 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -64.36 329.36 1.64 -62.72 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -0.35 Total: 29.24 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 3.18 Total: -20.56 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -2.71 Total: -78.23 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.09 Total: -33.70 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.68 Total: 43.03 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.08 Total: -2.51 kcal Total: -64.36 1.64 -62.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408519962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.732 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds