Wall clock time and date at job start Tue Mar 31 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86803 * 120.00250 * 2 1 4 4 H 1.48502 * 109.46786 * 270.86769 * 3 2 1 5 5 H 1.48498 * 109.46936 * 30.86840 * 3 2 1 6 6 H 1.48500 * 109.47112 * 150.86861 * 3 2 1 7 7 C 1.39901 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99777 * 357.15945 * 7 2 1 9 9 C 1.41148 * 120.00575 * 177.15628 * 7 2 1 10 10 C 1.40894 * 120.15639 * 321.84838 * 9 7 2 11 11 C 1.36368 * 119.85353 * 179.97438 * 10 9 7 12 12 C 1.39474 * 120.17589 * 359.97438 * 11 10 9 13 13 N 1.39268 * 119.83879 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99821 * 326.44005 * 13 12 11 15 15 O 1.21289 * 120.00050 * 5.48266 * 14 13 12 16 16 C 1.50701 * 119.99759 * 185.48515 * 14 13 12 17 17 H 1.09002 * 109.60313 * 264.65848 * 16 14 13 18 18 C 1.52993 * 109.60117 * 144.33392 * 16 14 13 19 19 C 1.51777 * 110.88098 * 326.70809 * 18 16 14 20 20 C 1.51791 * 113.81102 * 293.00138 * 19 18 16 21 21 C 1.53064 * 110.74368 * 66.81438 * 20 19 18 22 22 C 1.51422 * 108.49317 * 275.07826 * 21 20 19 23 23 O 1.21281 * 119.89338 * 251.19940 * 22 21 20 24 24 N 1.33368 * 120.21848 * 71.22239 * 22 21 20 25 25 C 1.39582 * 120.32156 * 0.27741 * 12 11 10 26 26 Cl 1.73596 * 119.92368 * 179.74531 * 25 12 11 27 27 C 1.36471 * 120.14441 * 359.48444 * 25 12 11 28 28 H 0.96998 * 119.99467 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.07372 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.91616 * 179.97438 * 11 10 9 31 31 H 0.96996 * 119.99890 * 146.43678 * 13 12 11 32 32 H 1.09001 * 109.19577 * 87.06799 * 18 16 14 33 33 H 1.09000 * 109.19151 * 206.39023 * 18 16 14 34 34 H 1.08995 * 108.61656 * 54.11985 * 19 18 16 35 35 H 1.08996 * 108.61388 * 172.02655 * 19 18 16 36 36 H 1.08998 * 109.22107 * 187.13878 * 20 19 18 37 37 H 1.09000 * 109.22191 * 306.49535 * 20 19 18 38 38 H 1.08998 * 109.63747 * 34.77967 * 21 20 19 39 39 H 1.08998 * 109.63193 * 155.38064 * 21 20 19 40 40 H 0.96994 * 119.79413 * 180.31595 * 24 22 21 41 41 H 1.08003 * 120.08977 * 180.26126 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4720 2.0569 -1.4000 5 1 1.4496 2.6473 0.7183 6 1 3.5495 1.4349 0.6816 7 6 2.0083 -1.2116 0.0005 8 1 1.4692 -2.1464 0.0473 9 6 3.4185 -1.2125 -0.0601 10 6 4.0928 -0.2743 -0.8663 11 6 5.4555 -0.2804 -0.9199 12 6 6.1821 -1.2120 -0.1787 13 7 7.5735 -1.2116 -0.2383 14 6 8.1988 -0.8738 -1.3834 15 8 7.5553 -0.4747 -2.3309 16 6 9.6977 -0.9919 -1.4865 17 1 10.1566 -0.0285 -1.2642 18 6 10.0819 -1.4293 -2.9013 19 6 9.0286 -2.3518 -3.4871 20 6 8.9319 -3.6947 -2.7861 21 6 8.4141 -3.5236 -1.3559 22 6 9.5874 -3.1965 -0.4563 23 8 9.9892 -4.0213 0.3369 24 7 10.1801 -2.0042 -0.5330 25 6 5.5213 -2.1482 0.6183 26 17 6.4357 -3.3074 1.5314 27 6 4.1582 -2.1508 0.6855 28 1 -0.4849 0.8401 -0.0004 29 1 3.5319 0.4482 -1.4407 30 1 5.9734 0.4381 -1.5379 31 1 8.0924 -1.4545 0.5444 32 1 10.1788 -0.5478 -3.5351 33 1 11.0373 -1.9530 -2.8674 34 1 8.0596 -1.8567 -3.4259 35 1 9.2637 -2.5258 -4.5371 36 1 8.2501 -4.3402 -3.3398 37 1 9.9188 -4.1566 -2.7576 38 1 7.6897 -2.7098 -1.3235 39 1 7.9445 -4.4493 -1.0233 40 1 10.9341 -1.8029 0.0430 41 1 3.6480 -2.8729 1.3058 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408519963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:38 Heat of formation + Delta-G solvation = -36.403575 kcal Electronic energy + Delta-G solvation = -27949.867300 eV Core-core repulsion = 24048.992397 eV Total energy + Delta-G solvation = -3900.874903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74693 -39.25222 -38.09517 -36.22247 -35.87639 -35.00664 -34.09297 -33.24812 -31.10961 -29.99815 -29.89859 -27.24205 -25.29894 -24.32153 -22.26149 -22.13063 -20.84562 -20.14860 -19.55242 -17.92372 -17.75185 -17.50168 -17.21116 -15.89456 -15.69242 -15.20863 -15.04556 -14.51993 -14.26573 -14.20274 -14.18686 -13.80188 -13.34490 -13.00041 -12.93834 -12.84119 -12.67929 -12.59091 -12.51229 -11.80475 -11.62555 -11.22547 -11.19575 -11.00952 -10.85652 -10.64527 -10.59399 -10.40690 -10.22792 -9.97383 -9.83395 -9.68799 -9.60268 -9.24500 -8.99713 -7.92731 -7.38694 -7.02061 -4.65856 1.94083 2.33344 2.52797 2.62622 2.78884 3.00828 3.02407 3.12314 3.19795 3.29123 3.86415 4.28115 4.39417 4.40334 4.55933 4.71356 4.87379 5.03605 5.09616 5.14804 5.42601 5.53845 5.62873 5.76074 5.84491 5.89954 6.02319 6.05977 6.12889 6.20052 6.39674 6.45399 6.54051 6.57403 6.81110 6.91932 7.04060 7.08081 7.25170 7.60826 7.63025 7.71383 8.10000 8.15561 8.21656 8.38195 8.59387 9.98285 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.004299 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.090128 B = 6510.919935 C = 7331.166004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.081 3.919 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.240 1.240 7 C -0.437 4.437 8 H 0.096 0.904 9 C 0.097 3.903 10 C -0.215 4.215 11 C -0.056 4.056 12 C -0.002 4.002 13 N -0.649 5.649 14 C 0.500 3.500 15 O -0.510 6.510 16 C 0.124 3.876 17 H 0.125 0.875 18 C -0.113 4.113 19 C -0.157 4.157 20 C -0.108 4.108 21 C -0.178 4.178 22 C 0.526 3.474 23 O -0.542 6.542 24 N -0.727 5.727 25 C -0.003 4.003 26 Cl -0.102 7.102 27 C -0.182 4.182 28 H 0.288 0.712 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.402 0.598 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.403 0.597 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.182 0.504 -3.459 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.163 1.163 7 C -0.466 4.466 8 H 0.114 0.886 9 C 0.093 3.907 10 C -0.235 4.235 11 C -0.076 4.076 12 C -0.095 4.095 13 N -0.295 5.295 14 C 0.288 3.712 15 O -0.386 6.386 16 C 0.016 3.984 17 H 0.143 0.857 18 C -0.152 4.152 19 C -0.194 4.194 20 C -0.146 4.146 21 C -0.218 4.218 22 C 0.313 3.687 23 O -0.418 6.418 24 N -0.383 5.383 25 C -0.031 4.031 26 Cl -0.073 7.073 27 C -0.202 4.202 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.239 0.761 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.115 0.885 40 H 0.240 0.760 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.566 0.276 -3.766 16.991 hybrid contribution 0.859 0.611 0.708 1.270 sum 17.425 0.886 -3.058 17.713 Atomic orbital electron populations 1.69618 1.07852 1.30402 1.35562 1.26124 0.94959 1.01494 0.91139 0.86368 0.80955 0.79622 0.79536 1.19353 1.21763 1.16294 1.19455 0.89544 0.95448 1.42134 0.88646 1.17719 0.93881 0.90397 0.88687 1.20845 0.93685 1.04861 1.04091 1.20495 0.93759 0.95960 0.97416 1.16791 0.80894 1.02166 1.09698 1.43312 1.06051 1.66654 1.13461 1.20437 0.89781 0.78238 0.82791 1.90653 1.66284 1.44717 1.36995 1.21592 0.91772 0.93536 0.91538 0.85726 1.21540 0.99558 1.00822 0.93254 1.21665 1.02669 0.95443 0.99618 1.21181 1.01371 0.97972 0.94066 1.22819 0.97152 1.06911 0.94930 1.20713 0.84164 0.80841 0.82965 1.90741 1.65503 1.47178 1.38422 1.46048 1.36241 1.14655 1.41386 1.20343 0.92146 0.92231 0.98424 1.98317 1.75101 1.59580 1.74336 1.20676 0.90076 1.05216 1.04282 0.90185 0.87348 0.85520 0.76131 0.89696 0.90607 0.87715 0.91619 0.90624 0.92294 0.85773 0.88461 0.76006 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.72 13.93 55.55 0.77 -19.95 16 2 C 0.08 2.03 5.51 -17.34 -0.10 1.93 16 3 Si 0.91 19.64 24.44 -169.99 -4.15 15.49 16 4 H -0.27 -5.63 6.82 56.52 0.39 -5.24 16 5 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.24 -5.24 6.36 56.52 0.36 -4.88 16 7 C -0.44 -11.09 9.59 -37.86 -0.36 -11.45 16 8 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 9 C 0.10 2.28 5.06 -106.80 -0.54 1.74 16 10 C -0.22 -4.82 6.71 -39.25 -0.26 -5.08 16 11 C -0.06 -1.16 8.64 -39.79 -0.34 -1.50 16 12 C 0.00 -0.04 5.71 -83.52 -0.48 -0.52 16 13 N -0.65 -9.92 3.09 -9.71 -0.03 -9.96 16 14 C 0.50 6.87 4.05 -10.98 -0.04 6.83 16 15 O -0.51 -8.33 11.33 5.55 0.06 -8.26 16 16 C 0.12 1.17 3.80 -68.71 -0.26 0.91 16 17 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 18 C -0.11 -1.00 5.34 -27.36 -0.15 -1.14 16 19 C -0.16 -1.72 5.16 -27.97 -0.14 -1.87 16 20 C -0.11 -1.26 5.67 -27.31 -0.15 -1.42 16 21 C -0.18 -2.48 5.35 -27.50 -0.15 -2.62 16 22 C 0.53 7.14 5.73 -11.26 -0.06 7.08 16 23 O -0.54 -9.20 17.92 5.56 0.10 -9.10 16 24 N -0.73 -7.22 4.58 -54.56 -0.25 -7.47 16 25 C 0.00 -0.06 6.30 -39.72 -0.25 -0.31 16 26 Cl -0.10 -1.76 27.89 -51.86 -1.45 -3.21 16 27 C -0.18 -3.94 9.50 -39.24 -0.37 -4.31 16 28 H 0.29 6.68 8.30 -40.82 -0.34 6.35 16 29 H 0.11 2.42 4.68 -52.48 -0.25 2.18 16 30 H 0.13 2.50 6.05 -52.49 -0.32 2.18 16 31 H 0.40 5.73 6.52 -40.82 -0.27 5.47 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 34 H 0.10 1.45 4.75 -51.93 -0.25 1.21 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 38 H 0.12 1.92 2.88 -51.93 -0.15 1.77 16 39 H 0.10 1.46 8.13 -51.93 -0.42 1.03 16 40 H 0.40 3.15 8.91 -40.82 -0.36 2.78 16 41 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -28.09 330.41 -8.20 -36.30 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -4.57 Total: 12.93 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.67 Total: -11.74 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.49 Total: -37.37 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.16 Total: -17.37 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.15 Total: 15.49 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.45 Total: -3.21 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.09 -8.20 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408519963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.108 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds