Wall clock time and date at job start Tue Mar 31 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00012 * 2 1 4 4 C 1.50694 * 109.47608 * 124.99859 * 3 2 1 5 5 C 1.37715 * 119.95830 * 264.99994 * 4 3 2 6 6 C 1.39731 * 119.91419 * 179.97438 * 5 4 3 7 7 C 1.47554 * 120.09322 * 179.97438 * 6 5 4 8 8 O 1.21592 * 119.99791 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00291 * 180.02562 * 7 6 5 10 10 C 1.39129 * 119.99820 * 174.86109 * 9 7 6 11 11 C 1.39509 * 119.83925 * 326.01972 * 10 9 7 12 12 C 1.36352 * 120.16769 * 179.72895 * 11 10 9 13 13 C 1.40875 * 119.83308 * 0.27428 * 12 11 10 14 14 C 1.41141 * 120.16430 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99601 * 27.83659 * 14 13 12 16 16 C 1.39905 * 120.00284 * 207.83008 * 14 13 12 17 17 N 1.30879 * 119.99658 * 11.32898 * 16 14 13 18 18 Si 1.86796 * 120.00134 * 191.33008 * 16 14 13 19 19 H 1.48496 * 109.47265 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47406 * 120.00271 * 18 16 14 21 21 H 1.48511 * 109.47003 * 240.00061 * 18 16 14 22 22 C 1.40883 * 119.67734 * 0.02562 * 13 12 11 23 23 C 1.36359 * 119.83021 * 359.97438 * 22 13 12 24 24 C 1.39785 * 119.82106 * 0.25180 * 6 5 4 25 25 C 1.37678 * 119.90402 * 359.53458 * 24 6 5 26 26 C 1.38985 * 119.95563 * 85.01634 * 4 3 2 27 27 O 1.35712 * 119.91076 * 0.02562 * 26 4 3 28 28 C 1.42896 * 117.00195 * 179.97438 * 27 26 4 29 29 H 1.08008 * 119.99803 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00332 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00037 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47719 * 4.99031 * 3 2 1 33 33 H 1.09004 * 109.46918 * 244.99425 * 3 2 1 34 34 H 1.08003 * 120.03979 * 0.02562 * 5 4 3 35 35 H 0.97002 * 120.00183 * 354.85130 * 9 7 6 36 36 H 1.08000 * 119.91431 * 0.02562 * 11 10 9 37 37 H 1.07998 * 120.08505 * 180.30069 * 12 11 10 38 38 H 0.96999 * 119.99371 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.08482 * 180.02562 * 22 13 12 40 40 H 1.08001 * 119.91821 * 180.02562 * 23 22 13 41 41 H 1.07995 * 120.04956 * 179.72171 * 24 6 5 42 42 H 1.07993 * 119.95372 * 180.19112 * 25 24 6 43 43 H 1.09000 * 109.47192 * 300.01008 * 28 27 26 44 44 H 1.09003 * 109.46614 * 60.00096 * 28 27 26 45 45 H 1.08994 * 109.47314 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3328 1.1638 5 6 2.6457 1.9271 2.3482 6 6 3.5335 1.9518 3.4270 7 6 3.1363 2.5880 4.6977 8 8 2.0352 3.0922 4.8070 9 7 3.9943 2.6112 5.7368 10 6 3.6625 3.3030 6.8975 11 6 2.9094 4.4745 6.8161 12 6 2.5758 5.1548 7.9497 13 6 2.9985 4.6750 9.2050 14 6 2.6567 5.3733 10.3829 15 1 1.7562 5.9686 10.4156 16 6 3.4843 5.2943 11.5081 17 7 4.6763 4.7631 11.4077 18 14 2.8882 5.9468 13.1538 19 1 1.5161 6.4940 13.0016 20 1 2.8744 4.8439 14.1480 21 1 3.8005 7.0220 13.6198 22 6 3.7641 3.4946 9.2788 23 6 4.0901 2.8250 8.1365 24 6 4.8012 1.3772 3.2972 25 6 5.1665 0.7811 2.1111 26 6 4.2801 0.7588 1.0403 27 8 4.6460 0.1748 -0.1289 28 6 5.9550 -0.3953 -0.1875 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3586 2.1317 0.0894 33 1 2.6213 1.4025 -0.9314 34 1 1.6665 2.3728 2.4435 35 1 4.8430 2.1455 5.6755 36 1 2.5858 4.8409 5.8530 37 1 1.9886 6.0589 7.8855 38 1 5.2499 4.7080 12.1880 39 1 4.0913 3.1207 10.2377 40 1 4.6766 1.9198 8.1915 41 1 5.4919 1.3982 4.1271 42 1 6.1445 0.3343 2.0110 43 1 6.6979 0.3805 -0.0025 44 1 6.0464 -1.1738 0.5700 45 1 6.1193 -0.8273 -1.1746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408705241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:42 Heat of formation + Delta-G solvation = -8.402831 kcal Electronic energy + Delta-G solvation = -27141.071914 eV Core-core repulsion = 23281.958496 eV Total energy + Delta-G solvation = -3859.113418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.72795 -39.56273 -37.74479 -36.93799 -35.32500 -34.47820 -32.99966 -31.55460 -30.58604 -29.57357 -28.85628 -27.81986 -26.59525 -25.08893 -23.29496 -22.10853 -21.50805 -20.77630 -20.07617 -19.44791 -18.30402 -17.47827 -17.21616 -16.83730 -16.10519 -15.86507 -15.43869 -15.16498 -14.74431 -14.62332 -14.23426 -14.15197 -13.91710 -13.79092 -13.37912 -13.08160 -12.82160 -12.61483 -12.54407 -12.20503 -12.11791 -11.93449 -11.76245 -11.52718 -11.42172 -11.22042 -11.11819 -11.04924 -10.90631 -10.53844 -10.08451 -9.74074 -9.53841 -9.41657 -9.22737 -9.09055 -8.73711 -8.36711 -7.54848 -6.94021 -6.72417 -4.30648 0.83447 1.11728 2.14316 2.60149 2.92450 2.99358 3.07689 3.10356 3.14058 3.26859 3.71126 3.92413 3.94886 4.42889 4.53518 4.66037 4.71051 4.78590 4.81665 4.93348 4.98813 5.08074 5.11085 5.14415 5.34115 5.43421 5.65067 5.69686 5.77447 5.78947 6.01799 6.05120 6.18890 6.27355 6.41866 6.43102 6.52743 6.60134 6.76735 6.93554 7.04859 7.05357 7.19957 7.28559 7.60966 7.73284 7.88632 8.04511 8.27486 8.29374 8.60264 8.75849 8.89521 8.99831 10.21046 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.002063 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.396384 B =13569.373633 C =14427.923442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C -0.045 4.045 4 C -0.119 4.119 5 C -0.019 4.019 6 C -0.157 4.157 7 C 0.543 3.457 8 O -0.531 6.531 9 N -0.645 5.645 10 C -0.003 4.003 11 C -0.077 4.077 12 C -0.212 4.212 13 C 0.104 3.896 14 C -0.456 4.456 15 H 0.078 0.922 16 C 0.072 3.928 17 N -0.801 5.801 18 Si 0.911 3.089 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.148 4.148 23 C -0.115 4.115 24 C -0.051 4.051 25 C -0.214 4.214 26 C 0.148 3.852 27 O -0.311 6.311 28 C 0.025 3.975 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.143 0.857 35 H 0.393 0.607 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.279 0.721 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -10.773 -20.145 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.160 4.160 3 C -0.081 4.081 4 C -0.120 4.120 5 C -0.038 4.038 6 C -0.160 4.160 7 C 0.332 3.668 8 O -0.409 6.409 9 N -0.287 5.287 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.232 4.232 13 C 0.102 3.898 14 C -0.486 4.486 15 H 0.096 0.904 16 C -0.145 4.145 17 N -0.427 5.427 18 Si 0.736 3.264 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.200 1.200 22 C -0.168 4.168 23 C -0.135 4.135 24 C -0.070 4.070 25 C -0.232 4.232 26 C 0.102 3.898 27 O -0.223 6.223 28 C -0.070 4.070 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.161 0.839 35 H 0.228 0.772 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.143 0.857 40 H 0.108 0.892 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.945 -10.465 -20.113 22.863 hybrid contribution 0.760 -0.129 0.966 1.236 sum 3.706 -10.594 -19.147 22.194 Atomic orbital electron populations 1.23854 0.95838 1.01926 1.01651 1.22818 0.95711 0.98084 0.99367 1.19576 0.96445 0.96082 0.96042 1.19021 0.93050 1.03197 0.96737 1.21007 0.99205 0.93917 0.89696 1.19981 0.95622 1.04981 0.95444 1.18090 0.84657 0.80569 0.83532 1.90768 1.20841 1.46528 1.82781 1.42898 1.19782 1.51803 1.14264 1.17164 1.11426 0.96658 0.84238 1.20262 0.98391 0.93149 0.97913 1.20703 1.08920 1.01321 0.92253 1.17699 0.89649 0.90488 0.92002 1.19594 1.07566 1.25813 0.95622 0.90380 1.25919 0.94022 0.93740 1.00798 1.69820 1.06617 1.34957 1.31352 0.86210 0.80072 0.79073 0.81053 1.18441 1.19793 1.20021 1.20977 1.03193 0.95789 0.96835 1.20249 1.02504 0.99054 0.91729 1.21125 0.94956 0.93971 0.96957 1.21114 1.00726 1.07391 0.94001 1.19033 0.93176 0.92640 0.84962 1.86034 1.33915 1.70152 1.32248 1.23103 0.82368 0.97890 1.03660 0.88450 0.88541 0.87489 0.90346 0.89629 0.83939 0.77234 0.87972 0.88605 0.91038 0.85744 0.89161 0.85244 0.84911 0.92448 0.92464 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 14.32 29.02 0.42 -1.31 16 2 C -0.14 -1.34 9.50 -36.03 -0.34 -1.69 16 3 C -0.04 -0.43 5.50 -29.04 -0.16 -0.59 16 4 C -0.12 -1.37 5.12 -104.54 -0.54 -1.90 16 5 C -0.02 -0.26 9.21 -39.22 -0.36 -0.62 16 6 C -0.16 -2.26 5.87 -104.96 -0.62 -2.88 16 7 C 0.54 10.03 7.49 -12.46 -0.09 9.93 16 8 O -0.53 -11.78 14.02 5.28 0.07 -11.71 16 9 N -0.64 -11.78 5.25 -10.67 -0.06 -11.83 16 10 C 0.00 -0.06 6.28 -83.60 -0.52 -0.58 16 11 C -0.08 -1.88 8.57 -39.79 -0.34 -2.23 16 12 C -0.21 -5.44 9.74 -39.26 -0.38 -5.82 16 13 C 0.10 2.81 5.56 -106.80 -0.59 2.22 16 14 C -0.46 -12.17 9.05 -37.86 -0.34 -12.51 16 15 H 0.08 2.02 7.87 -52.49 -0.41 1.60 16 16 C 0.07 1.79 5.25 -17.33 -0.09 1.70 16 17 N -0.80 -20.51 10.80 55.55 0.60 -19.92 16 18 Si 0.91 18.74 29.57 -169.99 -5.03 13.71 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.15 -3.82 8.61 -39.26 -0.34 -4.16 16 23 C -0.12 -2.66 9.89 -39.78 -0.39 -3.05 16 24 C -0.05 -0.59 9.53 -39.21 -0.37 -0.96 16 25 C -0.21 -2.11 9.01 -39.49 -0.36 -2.47 16 26 C 0.15 1.57 6.67 -39.01 -0.26 1.31 16 27 O -0.31 -2.84 9.61 -18.84 -0.18 -3.02 16 28 C 0.02 0.14 9.81 101.05 0.99 1.13 16 29 H 0.10 0.81 7.84 -52.48 -0.41 0.39 16 30 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 33 H 0.09 0.78 7.68 -51.93 -0.40 0.38 16 34 H 0.14 1.96 7.64 -52.48 -0.40 1.56 16 35 H 0.39 5.69 6.85 -40.82 -0.28 5.41 16 36 H 0.10 2.46 6.43 -52.49 -0.34 2.12 16 37 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 39 H 0.12 3.29 6.16 -52.49 -0.32 2.96 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.13 1.22 6.41 -52.49 -0.34 0.88 16 42 H 0.13 0.95 6.28 -52.49 -0.33 0.62 16 43 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 44 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 45 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -31.23 380.38 -9.23 -40.46 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.67 Total: 11.06 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -4.70 Total: -24.48 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.54 Total: -31.75 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.11 Total: -14.73 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.23 -9.23 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408705241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.055 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds