Wall clock time and date at job start Tue Mar 31 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30596 * 1 3 3 Si 1.86807 * 119.99776 * 2 1 4 4 H 1.48502 * 109.46803 * 274.98699 * 3 2 1 5 5 H 1.48502 * 109.47018 * 34.98058 * 3 2 1 6 6 H 1.48499 * 109.47126 * 154.98657 * 3 2 1 7 7 C 1.40213 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99947 * 186.27210 * 7 2 1 9 9 C 1.40827 * 119.99825 * 6.27825 * 7 2 1 10 10 O 1.21955 * 119.99517 * 353.72044 * 9 7 2 11 11 N 1.34768 * 119.99939 * 173.72353 * 9 7 2 12 12 N 1.40107 * 119.99817 * 179.97438 * 11 9 7 13 13 C 1.30604 * 119.99988 * 180.02562 * 12 11 9 14 14 C 1.46826 * 120.00143 * 179.97438 * 13 12 11 15 15 C 1.39609 * 120.33501 * 179.97438 * 14 13 12 16 16 C 1.40360 * 117.95836 * 180.02562 * 15 14 13 17 17 C 1.40640 * 121.14688 * 179.97438 * 16 15 14 18 18 C 1.36286 * 119.60721 * 180.02562 * 17 16 15 19 19 Cl 1.73604 * 119.60138 * 179.97438 * 18 17 16 20 20 C 1.39400 * 120.79273 * 359.97438 * 18 17 16 21 21 C 1.36250 * 121.08437 * 359.97438 * 20 18 17 22 22 C 1.40422 * 119.86507 * 0.04651 * 21 20 18 23 23 N 1.33910 * 120.72010 * 179.67806 * 22 21 20 24 24 C 1.30819 * 121.79759 * 179.71582 * 23 22 21 25 25 Cl 1.73600 * 119.28635 * 180.31408 * 24 23 22 26 26 H 0.97002 * 120.00261 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00524 * 359.97438 * 11 9 7 28 28 H 1.08003 * 120.00155 * 359.97438 * 13 12 11 29 29 H 1.08002 * 121.02155 * 0.02562 * 15 14 13 30 30 H 1.08006 * 120.19357 * 0.04262 * 17 16 15 31 31 H 1.07997 * 119.45899 * 180.02562 * 20 18 17 32 32 H 1.08003 * 120.06543 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.3820 2.1073 -1.3948 5 1 1.4939 2.6201 0.8027 6 1 3.5862 1.4122 0.5920 7 6 2.0071 -1.2142 0.0005 8 1 3.0823 -1.2169 0.1027 9 6 1.3094 -2.4303 -0.1323 10 8 0.0899 -2.4366 -0.1326 11 7 1.9894 -3.5869 -0.2590 12 7 1.2952 -4.7968 -0.3906 13 6 1.9541 -5.9178 -0.5129 14 6 1.2267 -7.1857 -0.6502 15 6 1.9240 -8.3880 -0.7819 16 6 1.1786 -9.5704 -0.9105 17 6 1.8123 -10.8184 -1.0477 18 6 1.0578 -11.9467 -1.1709 19 17 1.8400 -13.4871 -1.3409 20 6 -0.3345 -11.8786 -1.1620 21 6 -0.9797 -10.6858 -1.0298 22 6 -0.2382 -9.5003 -0.9007 23 7 -0.8546 -8.3181 -0.7763 24 6 -0.1849 -7.2015 -0.6493 25 17 -1.0507 -5.7060 -0.4841 26 1 -0.4850 0.8400 -0.0004 27 1 2.9594 -3.5819 -0.2591 28 1 3.0341 -5.9121 -0.5130 29 1 3.0038 -8.4077 -0.7848 30 1 2.8904 -10.8824 -1.0551 31 1 -0.9113 -12.7863 -1.2607 32 1 -2.0592 -10.6522 -1.0246 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408728766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:03 Heat of formation + Delta-G solvation = 54.496975 kcal Electronic energy + Delta-G solvation = -22184.200149 eV Core-core repulsion = 18390.884054 eV Total energy + Delta-G solvation = -3793.316095 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 337.013 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96295 -38.09785 -37.61843 -36.64314 -35.81120 -35.35165 -33.78750 -32.70591 -31.64919 -30.12998 -29.48452 -26.73055 -24.54613 -24.17097 -22.55864 -21.44258 -20.01872 -18.54767 -18.00727 -17.51842 -16.78018 -16.04539 -15.63252 -15.04254 -14.95443 -14.79645 -14.52750 -14.05513 -13.57762 -13.55402 -13.46738 -13.19244 -12.74539 -12.41375 -12.12649 -11.91182 -11.57688 -11.47733 -11.27912 -11.14991 -11.01115 -10.72208 -10.55104 -10.48907 -10.41811 -9.93482 -9.15436 -9.05575 -8.88365 -8.45894 -7.83507 -7.45226 -6.47440 -5.01208 -0.02618 0.32574 1.57817 1.74022 2.17900 2.18283 2.94078 3.03429 3.06977 3.11244 3.51132 3.83228 3.99122 4.20645 4.27050 4.38163 4.44206 4.57186 4.65165 4.86040 4.96869 5.25886 5.43467 5.51928 5.59830 5.67254 5.80245 5.84037 5.89701 6.11279 6.35645 6.46041 7.14953 7.57585 7.72802 7.91280 8.48144 8.69978 9.17967 10.31672 10.55055 Molecular weight = 337.01amu Principal moments of inertia in cm(-1) A = 0.034965 B = 0.002233 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.600796 B =12538.319616 C =13323.903781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.088 3.912 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.555 3.445 10 O -0.545 6.545 11 N -0.581 5.581 12 N -0.148 5.148 13 C -0.012 4.012 14 C -0.040 4.040 15 C -0.046 4.046 16 C -0.091 4.091 17 C -0.080 4.080 18 C -0.035 4.035 19 Cl -0.070 7.070 20 C -0.100 4.100 21 C -0.072 4.072 22 C 0.138 3.862 23 N -0.472 5.472 24 C 0.215 3.785 25 Cl 0.048 6.952 26 H 0.275 0.725 27 H 0.369 0.631 28 H 0.118 0.882 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -21.497 -2.346 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.364 3.636 10 O -0.424 6.424 11 N -0.327 5.327 12 N 0.040 4.960 13 C -0.219 4.219 14 C -0.045 4.045 15 C -0.075 4.075 16 C -0.094 4.094 17 C -0.100 4.100 18 C -0.061 4.061 19 Cl -0.041 7.041 20 C -0.121 4.121 21 C -0.091 4.091 22 C 0.015 3.985 23 N -0.183 5.183 24 C 0.035 3.965 25 Cl 0.077 6.923 26 H 0.086 0.914 27 H 0.205 0.795 28 H 0.135 0.865 29 H 0.171 0.829 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.327 -20.790 -2.277 21.043 hybrid contribution 2.772 0.486 -0.045 2.814 sum 5.098 -20.304 -2.322 21.063 Atomic orbital electron populations 1.69999 1.07360 1.28176 1.31351 1.25759 0.94669 1.00696 0.92443 0.86205 0.80199 0.80576 0.78988 1.19473 1.20108 1.18609 1.19773 0.94999 0.89733 1.52673 0.91015 1.16867 0.87882 0.80241 0.78639 1.90727 1.13245 1.84555 1.53884 1.48421 1.07728 1.02799 1.73742 1.75505 1.26705 0.93001 1.00832 1.23650 0.96865 0.90353 1.11003 1.19239 0.91376 0.93160 1.00771 1.21757 1.00363 0.89274 0.96111 1.18545 0.93808 0.93912 1.03131 1.20886 1.00367 0.89690 0.99065 1.20579 0.93085 0.86942 1.05520 1.98380 1.80750 1.28852 1.96093 1.20750 0.92139 0.98831 1.00377 1.20764 1.00793 0.89345 0.98167 1.18773 0.89720 0.91554 0.98438 1.67398 1.39854 0.96965 1.14108 1.22694 0.89277 0.90241 0.94332 1.98586 1.76673 1.23085 1.93977 0.91394 0.79485 0.86451 0.82892 0.83977 0.84246 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.10 11.74 55.56 0.65 -20.45 16 2 C 0.09 2.32 5.49 -17.34 -0.10 2.22 16 3 Si 0.92 18.84 29.57 -169.99 -5.03 13.81 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.54 -14.20 9.26 -37.86 -0.35 -14.55 16 8 H 0.07 1.70 7.86 -52.49 -0.41 1.29 16 9 C 0.56 15.32 7.65 -15.28 -0.12 15.20 16 10 O -0.55 -17.22 15.23 4.96 0.08 -17.14 16 11 N -0.58 -12.97 6.26 28.95 0.18 -12.79 16 12 N -0.15 -3.08 7.60 32.14 0.24 -2.84 16 13 C -0.01 -0.18 10.76 -14.60 -0.16 -0.34 16 14 C -0.04 -0.59 5.89 -104.80 -0.62 -1.21 16 15 C -0.05 -0.50 9.69 -38.27 -0.37 -0.88 16 16 C -0.09 -1.03 5.74 -106.81 -0.61 -1.64 16 17 C -0.08 -0.72 9.52 -39.38 -0.37 -1.09 16 18 C -0.03 -0.30 6.28 -39.85 -0.25 -0.55 16 19 Cl -0.07 -0.55 28.92 -51.86 -1.50 -2.05 16 20 C -0.10 -0.85 9.72 -39.86 -0.39 -1.24 16 21 C -0.07 -0.74 9.97 -39.48 -0.39 -1.13 16 22 C 0.14 1.80 6.61 -84.75 -0.56 1.24 16 23 N -0.47 -7.47 10.26 -7.70 -0.08 -7.54 16 24 C 0.22 3.64 7.32 -16.87 -0.12 3.52 16 25 Cl 0.05 0.96 25.82 -51.86 -1.34 -0.38 16 26 H 0.28 7.03 8.29 -40.82 -0.34 6.69 16 27 H 0.37 6.81 8.61 -182.59 -1.57 5.23 16 28 H 0.12 1.43 8.03 -52.48 -0.42 1.01 16 29 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -33.67 325.63 -9.53 -43.19 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.23 Total: 1.73 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -4.41 Total: -0.45 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 1.00 Total: -43.62 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.08 Total: -17.14 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -2.84 Total: -2.43 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.67 -9.53 -43.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408728766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.692 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds