Wall clock time and date at job start Tue Mar 31 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.47007 * 2 1 4 4 C 1.34872 * 116.99772 * 180.02562 * 3 2 1 5 5 O 1.21603 * 120.00090 * 359.97438 * 4 3 2 6 6 C 1.46736 * 119.99634 * 179.97438 * 4 3 2 7 7 C 1.43204 * 120.00242 * 359.97438 * 6 4 3 8 8 N 5.00543 * 99.40035 * 359.97438 * 2 1 3 9 9 C 1.38525 * 119.99672 * 179.97438 * 6 4 3 10 10 C 1.41163 * 119.99893 * 180.02562 * 9 6 4 11 11 C 1.40527 * 120.78246 * 310.03713 * 10 9 6 12 12 O 1.35284 * 119.86814 * 0.02562 * 11 10 9 13 13 C 1.34691 * 116.99882 * 185.93782 * 12 11 10 14 14 H 1.07998 * 119.99706 * 5.39653 * 13 12 11 15 15 C 1.38853 * 119.99960 * 185.40347 * 13 12 11 16 16 N 1.31408 * 120.00085 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99908 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47173 * 90.00163 * 17 15 13 19 19 H 1.48496 * 109.46874 * 210.00283 * 17 15 13 20 20 H 1.48505 * 109.47355 * 329.99969 * 17 15 13 21 21 C 1.39534 * 120.26298 * 180.02562 * 11 10 9 22 22 C 1.35835 * 121.81760 * 359.97438 * 21 11 10 23 23 C 1.40815 * 120.96674 * 359.97172 * 22 21 11 24 24 C 1.40439 * 121.17445 * 180.02562 * 23 22 21 25 25 C 1.36292 * 119.66284 * 179.97438 * 24 23 22 26 26 C 1.39155 * 120.96346 * 0.03894 * 25 24 23 27 27 C 1.36485 * 120.84720 * 359.97438 * 26 25 24 28 28 C 1.39772 * 119.64291 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47364 * 60.00051 * 1 2 3 30 30 H 1.08993 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46866 * 300.00064 * 1 2 3 32 32 H 1.09001 * 109.47342 * 239.99903 * 2 1 3 33 33 H 1.08998 * 109.47364 * 119.99949 * 2 1 3 34 34 H 1.07997 * 120.00083 * 359.97438 * 9 6 4 35 35 H 0.97002 * 120.00161 * 179.97438 * 16 15 13 36 36 H 1.07993 * 119.09067 * 180.02562 * 21 11 10 37 37 H 1.07994 * 119.51300 * 179.97438 * 22 21 11 38 38 H 1.07993 * 120.16811 * 359.95370 * 24 23 22 39 39 H 1.07991 * 119.51801 * 180.02562 * 25 24 23 40 40 H 1.07993 * 119.57295 * 180.25777 * 26 25 24 41 41 H 1.08002 * 120.18016 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3511 1.5457 -0.0005 5 8 4.0919 0.5813 -0.0005 6 6 3.9119 2.9017 -0.0011 7 6 3.0396 4.0374 -0.0017 8 7 2.3476 4.9382 -0.0022 9 6 5.2852 3.0832 -0.0012 10 6 5.8248 4.3876 -0.0012 11 6 5.3820 5.3490 -0.9255 12 8 4.4272 5.0264 -1.8280 13 6 4.1335 5.9494 -2.7639 14 1 4.7114 6.8597 -2.8245 15 6 3.0877 5.7305 -3.6508 16 7 2.8009 6.6313 -4.5635 17 14 2.0886 4.1557 -3.5462 18 1 0.9391 4.3588 -2.6283 19 1 1.5862 3.7977 -4.8970 20 1 2.9462 3.0586 -3.0303 21 6 5.9232 6.6351 -0.9162 22 6 6.8829 7.0018 -0.0276 23 6 7.3725 6.0901 0.9274 24 6 8.3642 6.4648 1.8485 25 6 8.8155 5.5575 2.7600 26 6 8.3084 4.2621 2.7922 27 6 7.3443 3.8658 1.9110 28 6 6.8588 4.7719 0.9639 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.9431 2.2267 -0.0003 35 1 2.0705 6.4782 -5.1833 36 1 5.5687 7.3591 -1.6348 37 1 7.2760 8.0073 -0.0539 38 1 8.7675 7.4665 1.8344 39 1 9.5778 5.8482 3.4675 40 1 8.6792 3.5627 3.5267 41 1 6.9581 2.8578 1.9459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408921180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:31 Heat of formation + Delta-G solvation = -17.716362 kcal Electronic energy + Delta-G solvation = -28502.150874 eV Core-core repulsion = 24506.800496 eV Total energy + Delta-G solvation = -3995.350378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.34628 -39.92353 -38.62072 -36.59721 -35.94143 -35.16552 -33.87760 -32.83157 -31.78200 -31.03251 -29.50867 -28.59277 -25.83769 -24.90466 -23.18794 -22.76605 -22.08484 -21.25755 -20.72031 -18.86748 -18.32598 -17.54631 -16.75085 -16.47135 -16.34246 -16.13883 -15.32614 -14.99788 -14.45974 -14.29750 -14.11958 -14.04378 -13.68596 -13.60214 -13.15362 -12.94490 -12.93065 -12.75742 -12.69213 -12.51050 -12.46959 -12.11536 -11.85222 -11.72897 -11.67832 -11.50213 -11.12645 -10.95319 -10.78858 -10.50580 -10.42037 -10.39485 -10.26013 -9.89708 -9.67200 -9.14172 -8.79830 -7.99264 -7.21170 -6.88211 -4.42836 0.42329 1.27352 1.52490 2.35850 2.87338 2.88005 3.02869 3.13456 3.22169 3.36949 3.58390 3.95711 4.17697 4.33556 4.40187 4.66410 4.72036 4.91542 4.95107 4.99364 5.09317 5.16363 5.24659 5.27777 5.30112 5.41887 5.55412 5.63668 5.67492 5.71005 5.77392 5.95959 5.98032 6.11396 6.13621 6.30349 6.40490 6.52620 6.55456 6.64130 6.74422 6.81355 6.88172 7.12130 7.23508 7.32343 7.55132 7.99355 8.41225 8.42586 8.99538 10.15025 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009332 B = 0.005439 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.564762 B = 5146.327784 C = 7660.773732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.355 6.355 4 C 0.530 3.470 5 O -0.521 6.521 6 C -0.162 4.162 7 C 0.268 3.732 8 N -0.414 5.414 9 C 0.124 3.876 10 C -0.248 4.248 11 C 0.191 3.809 12 O -0.162 6.162 13 C -0.378 4.378 14 H 0.117 0.883 15 C 0.080 3.920 16 N -0.840 5.840 17 Si 0.887 3.113 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.249 1.249 21 C -0.174 4.174 22 C -0.055 4.055 23 C -0.108 4.108 24 C -0.081 4.081 25 C -0.159 4.159 26 C -0.099 4.099 27 C -0.136 4.136 28 C 0.042 3.958 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.289 0.711 36 H 0.143 0.857 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.438 -7.016 9.777 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.272 6.272 4 C 0.377 3.623 5 O -0.412 6.412 6 C -0.167 4.167 7 C -0.047 4.047 8 N -0.091 5.091 9 C 0.102 3.898 10 C -0.250 4.250 11 C 0.132 3.868 12 O -0.060 6.060 13 C -0.452 4.452 14 H 0.134 0.866 15 C -0.130 4.130 16 N -0.472 5.472 17 Si 0.710 3.290 18 H -0.182 1.182 19 H -0.202 1.202 20 H -0.173 1.173 21 C -0.192 4.192 22 C -0.073 4.073 23 C -0.108 4.108 24 C -0.099 4.099 25 C -0.177 4.177 26 C -0.117 4.117 27 C -0.154 4.154 28 C 0.042 3.958 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.100 0.900 36 H 0.160 0.840 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.171 -6.058 9.455 11.979 hybrid contribution -0.213 -0.844 -0.351 0.939 sum 3.958 -6.902 9.104 12.091 Atomic orbital electron populations 1.21811 0.92928 1.02656 1.03693 1.22987 0.95195 0.80432 1.02521 1.86666 1.24123 1.31906 1.84493 1.20435 0.80383 0.89003 0.72436 1.90821 1.60244 1.41769 1.48390 1.17058 0.91043 0.85293 1.23334 1.24923 0.93209 0.92906 0.93617 1.81107 1.09251 1.09465 1.09290 1.21445 0.91567 0.96734 0.80092 1.17453 1.08017 0.93554 1.06018 1.19255 0.88074 0.91515 0.87970 1.83485 1.45275 1.42671 1.34581 1.21035 1.16944 1.00481 1.06696 0.86624 1.24536 0.95644 0.98818 0.93978 1.69541 1.28233 1.33542 1.15914 0.86420 0.81573 0.82567 0.78430 1.18198 1.20192 1.17294 1.21060 0.99463 0.96763 1.01908 1.20873 0.94913 0.98436 0.93107 1.17849 0.99958 0.93952 0.99063 1.20935 0.95473 0.99069 0.94395 1.20607 1.02246 0.94167 1.00657 1.20789 0.96528 0.96070 0.98306 1.20757 0.98886 0.99297 0.96449 1.18432 0.91758 0.92567 0.93066 0.91489 0.90336 0.91480 0.91226 0.91158 0.83650 0.89985 0.83979 0.85834 0.86211 0.86747 0.86509 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.16 0.38 -1.25 16 2 C 0.06 0.83 6.20 37.16 0.23 1.06 16 3 O -0.35 -6.32 9.76 -40.96 -0.40 -6.72 16 4 C 0.53 9.91 7.87 34.16 0.27 10.18 16 5 O -0.52 -9.71 16.09 -19.34 -0.31 -10.02 16 6 C -0.16 -3.18 5.58 -104.43 -0.58 -3.76 16 7 C 0.27 5.95 10.26 -22.47 -0.23 5.72 16 8 N -0.41 -9.97 18.17 41.84 0.76 -9.21 16 9 C 0.12 2.21 7.90 -38.37 -0.30 1.91 16 10 C -0.25 -4.67 5.28 -104.56 -0.55 -5.22 16 11 C 0.19 4.05 5.82 -38.24 -0.22 3.82 16 12 O -0.16 -3.89 5.03 1.85 0.01 -3.88 16 13 C -0.38 -9.71 9.89 30.96 0.31 -9.40 16 14 H 0.12 2.96 5.48 -52.49 -0.29 2.67 16 15 C 0.08 2.11 5.50 -17.51 -0.10 2.02 16 16 N -0.84 -22.54 13.96 55.49 0.77 -21.76 16 17 Si 0.89 21.36 27.80 -169.99 -4.73 16.63 16 18 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.25 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.17 -3.34 8.99 -39.96 -0.36 -3.70 16 22 C -0.05 -0.88 9.69 -39.47 -0.38 -1.26 16 23 C -0.11 -1.72 5.74 -106.84 -0.61 -2.33 16 24 C -0.08 -1.05 9.77 -39.45 -0.39 -1.44 16 25 C -0.16 -1.90 9.95 -39.94 -0.40 -2.29 16 26 C -0.10 -1.21 9.96 -39.87 -0.40 -1.61 16 27 C -0.14 -1.92 9.44 -39.64 -0.37 -2.29 16 28 C 0.04 0.70 5.90 -104.71 -0.62 0.09 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.15 2.19 7.43 -52.49 -0.39 1.80 16 35 H 0.29 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.14 2.79 5.62 -52.49 -0.29 2.50 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.55 7.20 -52.49 -0.38 1.17 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -29.71 363.12 -7.04 -36.75 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.29 Total: 2.50 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -4.33 Total: -9.76 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 1.53 Total: -30.97 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.70 Total: -20.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.73 Total: 16.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.71 -7.04 -36.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408921180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.036 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds