Wall clock time and date at job start Tue Mar 31 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40158 * 125.79651 * 2 1 4 4 C 1.35114 * 107.98039 * 179.73404 * 3 2 1 5 5 C 1.50696 * 126.21571 * 180.26004 * 4 3 2 6 6 N 1.36168 * 107.57616 * 0.36844 * 4 3 2 7 7 C 1.34776 * 126.11412 * 179.90133 * 6 4 3 8 8 O 1.21578 * 120.00372 * 359.70808 * 7 6 4 9 9 C 1.46856 * 119.99681 * 179.71326 * 7 6 4 10 10 C 1.43206 * 120.00070 * 359.97438 * 9 7 6 11 11 N 3.98344 * 99.69590 * 179.97438 * 2 1 3 12 12 C 1.38031 * 120.00202 * 179.97438 * 9 7 6 13 13 C 1.46310 * 120.00474 * 187.29882 * 12 9 7 14 14 C 1.40345 * 120.11904 * 33.74437 * 13 12 9 15 15 C 1.36523 * 119.86693 * 179.97438 * 14 13 12 16 16 C 1.39283 * 120.12726 * 0.02562 * 15 14 13 17 17 O 1.35494 * 119.87389 * 179.97438 * 16 15 14 18 18 C 1.34737 * 117.00044 * 352.90968 * 17 16 15 19 19 H 1.08007 * 119.99615 * 5.11905 * 18 17 16 20 20 C 1.38780 * 120.00286 * 185.12516 * 18 17 16 21 21 N 1.31463 * 120.00071 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00157 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47365 * 59.99632 * 22 20 18 24 24 H 1.48504 * 109.47038 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46701 * 299.99155 * 22 20 18 26 26 C 1.39295 * 120.25781 * 359.97412 * 16 15 14 27 27 C 1.36524 * 120.12214 * 0.04920 * 26 16 15 28 28 N 1.30703 * 125.79955 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47463 * 270.01821 * 1 2 3 30 30 H 1.09002 * 109.47070 * 30.01854 * 1 2 3 31 31 H 1.08999 * 109.47082 * 150.01624 * 1 2 3 32 32 H 1.08001 * 126.01067 * 359.96371 * 3 2 1 33 33 H 1.09001 * 109.47192 * 270.13287 * 5 4 3 34 34 H 1.09012 * 109.46724 * 30.12666 * 5 4 3 35 35 H 1.09000 * 109.47272 * 150.12230 * 5 4 3 36 36 H 1.08007 * 119.99617 * 7.29580 * 12 9 7 37 37 H 1.07997 * 120.06479 * 0.26026 * 14 13 12 38 38 H 1.08001 * 119.93486 * 180.02562 * 15 14 13 39 39 H 0.96997 * 119.99928 * 180.02562 * 21 20 18 40 40 H 1.07998 * 119.94115 * 180.02562 * 26 16 15 41 41 H 1.07996 * 120.06628 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3267 1.1368 0.0000 4 6 3.6131 0.7234 0.0060 5 6 4.8327 1.6085 0.0137 6 7 3.6074 -0.6382 0.0013 7 6 4.6929 -1.4371 0.0029 8 8 5.8066 -0.9496 0.0037 9 6 4.5303 -2.8967 0.0036 10 6 3.2184 -3.4710 0.0032 11 7 2.1778 -3.9265 0.0018 12 6 5.6419 -3.7150 0.0048 13 6 5.4861 -5.1609 -0.1555 14 6 4.4616 -5.6733 -0.9663 15 6 4.3213 -7.0234 -1.1126 16 6 5.1922 -7.8917 -0.4586 17 8 5.0479 -9.2307 -0.6071 18 6 3.9600 -9.6582 -1.2771 19 1 3.2947 -8.9435 -1.7388 20 6 3.6941 -11.0169 -1.3740 21 7 4.5040 -11.8869 -0.8124 22 14 2.1861 -11.6096 -2.3036 23 1 2.2661 -11.1581 -3.7160 24 1 2.1296 -13.0929 -2.2610 25 1 0.9640 -11.0490 -1.6731 26 6 6.2109 -7.3888 0.3474 27 6 6.3603 -6.0406 0.5014 28 7 2.2715 -1.0601 0.0005 29 1 -0.3634 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5136 32 1 1.9896 2.1628 -0.0006 33 1 5.1307 1.8255 -1.0121 34 1 4.6019 2.5406 0.5299 35 1 5.6475 1.0999 0.5290 36 1 6.6267 -3.2878 0.1239 37 1 3.7884 -5.0008 -1.4771 38 1 3.5335 -7.4189 -1.7366 39 1 4.3183 -12.8365 -0.8804 40 1 6.8835 -8.0667 0.8517 41 1 7.1502 -5.6517 1.1268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408977290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:03 Heat of formation + Delta-G solvation = 92.005621 kcal Electronic energy + Delta-G solvation = -26977.828582 eV Core-core repulsion = 23019.528857 eV Total energy + Delta-G solvation = -3958.299724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.14295 -39.59109 -39.13264 -37.39639 -35.95510 -33.75756 -33.38324 -32.68408 -32.24761 -30.62677 -29.32700 -28.49709 -27.36591 -25.88549 -24.36859 -22.69911 -21.90523 -21.02606 -20.53683 -19.85769 -18.39221 -18.13860 -17.22779 -16.42715 -15.96991 -15.63379 -14.89695 -14.66641 -14.48738 -14.41949 -14.22876 -14.05424 -13.84602 -13.65077 -13.64306 -13.49969 -13.20810 -12.97035 -12.77012 -12.62689 -12.48916 -12.44672 -12.22469 -12.02740 -11.87356 -11.67951 -11.27486 -11.14905 -10.92963 -10.76290 -10.66087 -10.39072 -9.74312 -9.67328 -9.49638 -9.05411 -8.99318 -8.57803 -7.33645 -6.83593 -4.33566 0.21801 1.07316 2.08122 2.12444 2.22633 2.41271 2.77722 2.96807 2.99487 3.01240 3.26160 3.70634 3.89708 3.91421 4.29059 4.30864 4.34922 4.67544 4.76244 4.87069 4.90965 5.09160 5.16523 5.26278 5.29240 5.34349 5.35849 5.36529 5.44990 5.57476 5.67949 5.78239 5.85326 5.90991 5.95821 6.22635 6.26121 6.33947 6.58540 6.62382 6.75344 6.92991 7.07018 7.10734 7.17046 7.47845 7.59591 7.62584 8.12297 8.60140 9.24489 10.31457 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.002485 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.526660 B =11263.064548 C =12658.755829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.103 3.897 3 C -0.253 4.253 4 C 0.104 3.896 5 C -0.099 4.099 6 N -0.370 5.370 7 C 0.615 3.385 8 O -0.493 6.493 9 C -0.199 4.199 10 C 0.273 3.727 11 N -0.420 5.420 12 C 0.130 3.870 13 C -0.236 4.236 14 C -0.017 4.017 15 C -0.241 4.241 16 C 0.173 3.827 17 O -0.147 6.147 18 C -0.389 4.389 19 H 0.101 0.899 20 C 0.044 3.956 21 N -0.840 5.840 22 Si 0.947 3.053 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.265 1.265 26 C -0.199 4.199 27 C -0.023 4.023 28 N -0.267 5.267 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.279 0.721 40 H 0.125 0.875 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 22.121 1.173 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.280 4.280 4 C -0.013 4.013 5 C -0.156 4.156 6 N -0.167 5.167 7 C 0.412 3.588 8 O -0.366 6.366 9 C -0.206 4.206 10 C -0.041 4.041 11 N -0.097 5.097 12 C 0.107 3.893 13 C -0.237 4.237 14 C -0.036 4.036 15 C -0.260 4.260 16 C 0.114 3.886 17 O -0.046 6.046 18 C -0.463 4.463 19 H 0.118 0.882 20 C -0.164 4.164 21 N -0.471 5.471 22 Si 0.770 3.230 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.189 1.189 26 C -0.218 4.218 27 C -0.042 4.042 28 N -0.087 5.087 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.175 0.825 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.167 0.833 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.143 0.857 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.562 19.832 1.264 19.934 hybrid contribution -0.450 0.802 -0.512 1.053 sum -2.012 20.634 0.752 20.746 Atomic orbital electron populations 1.20292 0.85910 1.03876 1.03550 1.22806 0.97595 0.90553 0.95846 1.21439 0.90787 1.00223 1.15560 1.21693 0.97916 0.83983 0.97672 1.20693 0.93455 0.97500 1.04001 1.47166 1.06675 1.05198 1.57682 1.17630 0.81364 0.86200 0.73597 1.90801 1.22602 1.76122 1.47057 1.17356 0.88218 0.89924 1.25072 1.24718 0.92088 0.93206 0.94088 1.81101 1.10659 1.08657 1.09256 1.23127 0.96745 0.91973 0.77448 1.18372 1.03722 0.90893 1.10712 1.20916 0.93166 0.94978 0.94556 1.20823 1.04456 0.93072 1.07624 1.19717 0.93000 0.84371 0.91535 1.83842 1.41459 1.16696 1.62554 1.21601 1.00882 0.92354 1.31495 0.88155 1.25491 0.99356 0.94540 0.97047 1.69977 1.35601 1.02991 1.38517 0.85664 0.79503 0.78244 0.79575 1.18985 1.19825 1.18932 1.19925 1.01880 0.95109 1.04914 1.20593 0.95723 0.92105 0.95731 1.77638 0.85250 1.22054 1.23808 0.89895 0.89975 0.90276 0.82528 0.89773 0.89894 0.88831 0.83255 0.86924 0.85029 0.91110 0.85677 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.44 36.00 0.38 -0.27 16 2 C 0.10 1.23 7.21 -82.35 -0.59 0.63 16 3 C -0.25 -2.56 10.65 -39.97 -0.43 -2.99 16 4 C 0.10 1.20 6.90 -81.78 -0.56 0.64 16 5 C -0.10 -0.83 9.65 36.00 0.35 -0.48 16 6 N -0.37 -5.31 3.64 -9.51 -0.03 -5.35 16 7 C 0.62 9.00 7.79 -12.77 -0.10 8.90 16 8 O -0.49 -7.06 14.22 5.30 0.08 -6.98 16 9 C -0.20 -3.01 5.82 -104.56 -0.61 -3.62 16 10 C 0.27 4.82 9.20 -22.47 -0.21 4.62 16 11 N -0.42 -8.16 17.99 41.84 0.75 -7.41 16 12 C 0.13 1.78 9.43 -36.41 -0.34 1.44 16 13 C -0.24 -3.85 5.52 -105.07 -0.58 -4.43 16 14 C -0.02 -0.32 8.24 -39.41 -0.32 -0.65 16 15 C -0.24 -5.06 9.10 -39.81 -0.36 -5.42 16 16 C 0.17 3.87 6.66 -38.80 -0.26 3.61 16 17 O -0.15 -3.87 9.74 1.09 0.01 -3.86 16 18 C -0.39 -10.12 9.48 30.93 0.29 -9.83 16 19 H 0.10 2.43 5.19 -52.48 -0.27 2.16 16 20 C 0.04 1.12 5.50 -17.51 -0.10 1.02 16 21 N -0.84 -22.79 13.67 55.49 0.76 -22.03 16 22 Si 0.95 19.22 29.55 -169.99 -5.02 14.19 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 C -0.20 -3.78 9.93 -39.81 -0.40 -4.17 16 27 C -0.02 -0.36 9.75 -39.41 -0.38 -0.75 16 28 N -0.27 -4.05 9.63 33.71 0.32 -3.73 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.09 0.91 6.27 -51.93 -0.33 0.59 16 36 H 0.15 1.60 7.61 -52.48 -0.40 1.20 16 37 H 0.11 2.06 5.93 -52.49 -0.31 1.74 16 38 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 39 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -31.05 364.86 -5.99 -37.04 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.12 Total: 4.37 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -4.23 Total: -11.75 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 1.80 Total: -38.51 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.05 -5.99 -37.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408977290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.043 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds