Wall clock time and date at job start Tue Mar 31 2020 04:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.40521 * 120.87722 * 186.25482 * 3 2 1 5 5 N 1.38415 * 119.85495 * 0.25948 * 4 3 2 6 6 N 1.31936 * 120.28568 * 180.23713 * 4 3 2 7 7 C 1.32949 * 122.91993 * 359.86664 * 6 4 3 8 8 C 1.37418 * 120.52756 * 359.54584 * 7 6 4 9 9 C 1.40277 * 119.38500 * 0.89541 * 8 7 6 10 10 C 1.48034 * 120.68512 * 179.52311 * 9 8 7 11 11 C 1.39582 * 120.06249 * 64.95204 * 10 9 8 12 12 C 1.37774 * 119.93169 * 180.23109 * 11 10 9 13 13 C 1.39045 * 120.06496 * 359.51488 * 12 11 10 14 14 O 1.35653 * 119.93882 * 180.25062 * 13 12 11 15 15 C 1.34807 * 116.99785 * 354.45574 * 14 13 12 16 16 H 1.08000 * 119.99979 * 5.05635 * 15 14 13 17 17 C 1.38671 * 120.00185 * 185.05091 * 15 14 13 18 18 N 1.31543 * 119.99823 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00445 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46721 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47444 * 119.99946 * 19 17 15 22 22 H 1.48503 * 109.46914 * 240.00201 * 19 17 15 23 23 C 1.39051 * 120.12771 * 0.28120 * 13 12 11 24 24 C 1.37768 * 120.06419 * 359.95158 * 23 13 12 25 25 C 1.50538 * 122.88182 * 180.51709 * 8 7 6 26 26 C 1.52755 * 110.66044 * 342.68590 * 25 8 7 27 27 C 1.53323 * 108.31097 * 50.66972 * 26 25 8 28 28 C 1.50821 * 117.22009 * 179.57643 * 7 6 4 29 29 H 0.97003 * 120.00225 * 359.97438 * 5 4 3 30 30 H 0.96997 * 119.99776 * 179.97438 * 5 4 3 31 31 H 1.07995 * 120.03753 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.96086 * 179.79563 * 12 11 10 33 33 H 0.97006 * 119.99896 * 179.97438 * 18 17 15 34 34 H 1.08004 * 119.97150 * 179.97438 * 23 13 12 35 35 H 1.08005 * 120.03238 * 180.02562 * 24 23 13 36 36 H 1.08996 * 109.38652 * 222.27612 * 25 8 7 37 37 H 1.09000 * 109.02305 * 102.86349 * 25 8 7 38 38 H 1.09000 * 109.69419 * 290.96168 * 26 25 8 39 39 H 1.08997 * 109.72562 * 170.39252 * 26 25 8 40 40 H 1.09005 * 109.67507 * 170.48648 * 27 26 25 41 41 H 1.08997 * 109.67477 * 49.95302 * 27 26 25 42 42 H 1.09000 * 109.24580 * 282.35848 * 28 7 6 43 43 H 1.09000 * 109.24728 * 41.80701 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2886 1.1998 0.1314 5 7 2.6113 2.3992 0.2684 6 7 4.6079 1.1874 0.1252 7 6 5.3193 0.0712 0.0005 8 6 4.6930 -1.1459 -0.1209 9 6 3.2913 -1.2007 -0.1313 10 6 2.5870 -2.4951 -0.2712 11 6 2.7005 -3.4644 0.7267 12 6 2.0476 -4.6701 0.5915 13 6 1.2681 -4.9178 -0.5329 14 8 0.6223 -6.1039 -0.6610 15 6 0.8690 -7.0396 0.2775 16 1 1.4902 -6.8006 1.1281 17 6 0.3253 -8.3089 0.1509 18 7 -0.4318 -8.5998 -0.8847 19 14 0.6666 -9.6054 1.4518 20 1 1.5393 -9.0302 2.5068 21 1 -0.6150 -10.0493 2.0565 22 1 1.3474 -10.7673 0.8260 23 6 1.1497 -3.9524 -1.5267 24 6 1.8041 -2.7468 -1.3991 25 6 5.4458 -2.4427 -0.2535 26 6 6.8960 -2.1852 -0.6584 27 6 7.4832 -1.1371 0.2942 28 6 6.8214 0.2071 -0.0001 29 1 1.6414 2.4107 0.2731 30 1 3.1067 3.2281 0.3596 31 1 3.3022 -3.2708 1.6024 32 1 2.1378 -5.4217 1.3618 33 1 -0.8119 -9.4879 -0.9734 34 1 0.5438 -4.1477 -2.3992 35 1 1.7115 -1.9972 -2.1711 36 1 4.9663 -3.0636 -1.0103 37 1 5.4271 -2.9639 0.7036 38 1 6.9309 -1.8119 -1.6819 39 1 7.4682 -3.1099 -0.5850 40 1 8.5588 -1.0590 0.1359 41 1 7.2837 -1.4263 1.3260 42 1 7.1496 0.5629 -0.9767 43 1 7.1174 0.9272 0.7627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408980902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:52 Heat of formation + Delta-G solvation = 47.047074 kcal Electronic energy + Delta-G solvation = -27674.623732 eV Core-core repulsion = 23877.519031 eV Total energy + Delta-G solvation = -3797.104700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91213 -39.05225 -37.53541 -36.89461 -35.98390 -34.11510 -33.41889 -32.31230 -30.51368 -30.06915 -29.26296 -28.40808 -25.59799 -24.48511 -23.40892 -22.74232 -21.96811 -20.61380 -20.40417 -18.52445 -18.14636 -17.62156 -17.15857 -16.75696 -15.74649 -15.25628 -14.74614 -14.60695 -14.58463 -14.33274 -14.20726 -13.88325 -13.75563 -13.58489 -13.33880 -13.12593 -12.95541 -12.87286 -12.79367 -12.55695 -12.28160 -12.19084 -11.81759 -11.38964 -11.19828 -11.04663 -10.93591 -10.86376 -10.82409 -10.67820 -10.50570 -10.35931 -9.55770 -9.54089 -9.29713 -8.92117 -8.34745 -7.88977 -7.30155 -6.57160 -4.14932 0.68449 1.30475 2.11205 2.14474 2.82277 3.06072 3.07261 3.07710 3.13548 3.19907 3.87263 3.90237 3.99812 4.28545 4.42914 4.53363 4.80519 4.81750 4.92277 4.94314 4.98464 5.14041 5.31017 5.40670 5.45770 5.51510 5.53861 5.62694 5.65319 5.70107 5.81773 5.92466 5.97246 6.07053 6.13886 6.22559 6.25030 6.37714 6.46990 6.55049 6.75823 6.90969 6.99947 7.08514 7.18811 7.20070 7.30111 7.64216 7.66115 7.87498 8.06407 8.87921 9.55615 10.60078 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.003192 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.836760 B = 8770.826933 C =10181.406503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.267 3.733 3 C -0.157 4.157 4 C 0.453 3.547 5 N -0.844 5.844 6 N -0.559 5.559 7 C 0.209 3.791 8 C -0.178 4.178 9 C 0.128 3.872 10 C -0.183 4.183 11 C -0.038 4.038 12 C -0.235 4.235 13 C 0.165 3.835 14 O -0.168 6.168 15 C -0.393 4.393 16 H 0.096 0.904 17 C 0.041 3.959 18 N -0.856 5.856 19 Si 0.943 3.057 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.274 1.274 23 C -0.192 4.192 24 C -0.045 4.045 25 C -0.066 4.066 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.069 4.069 29 H 0.408 0.592 30 H 0.407 0.593 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.272 0.728 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.036 16.480 2.253 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.048 4.048 3 C -0.168 4.168 4 C 0.210 3.790 5 N -0.387 5.387 6 N -0.278 5.278 7 C 0.073 3.927 8 C -0.183 4.183 9 C 0.118 3.882 10 C -0.184 4.184 11 C -0.057 4.057 12 C -0.254 4.254 13 C 0.110 3.890 14 O -0.070 6.070 15 C -0.469 4.469 16 H 0.113 0.887 17 C -0.165 4.165 18 N -0.490 5.490 19 Si 0.767 3.233 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.211 4.211 24 C -0.064 4.064 25 C -0.103 4.103 26 C -0.159 4.159 27 C -0.157 4.157 28 C -0.106 4.106 29 H 0.238 0.762 30 H 0.237 0.763 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.403 16.921 2.076 21.686 hybrid contribution -0.257 -1.013 0.625 1.218 sum 13.146 15.908 2.701 20.813 Atomic orbital electron populations 1.81244 1.11661 1.06910 1.10069 1.25168 0.92133 0.94022 0.93487 1.16418 0.85411 0.93838 1.21110 1.17815 0.87931 0.85001 0.88259 1.42138 1.09200 1.06067 1.81313 1.66960 1.05106 1.31526 1.24186 1.20765 0.95616 0.86575 0.89714 1.20205 0.92373 0.96297 1.09419 1.19029 0.91592 0.91073 0.86545 1.17974 1.07499 0.93732 0.99219 1.20658 0.96710 0.91827 0.96462 1.21071 1.04916 0.98825 1.00614 1.19492 0.89622 0.87339 0.92578 1.83948 1.56313 1.18691 1.48084 1.21445 1.32963 0.90075 1.02417 0.88694 1.25349 0.95858 0.97275 0.97972 1.70044 1.29546 1.21690 1.27683 0.85619 0.78626 0.79708 0.79345 1.18935 1.20031 1.19978 1.20101 1.06807 0.93980 1.00196 1.20551 0.94350 0.95598 0.95869 1.20297 0.93982 0.93340 1.02725 1.21599 0.95763 0.99153 0.99392 1.21582 0.99598 0.94184 1.00384 1.20422 0.88124 0.98690 1.03402 0.76205 0.76305 0.87097 0.85085 0.91824 0.86179 0.87158 0.89965 0.90725 0.91598 0.91172 0.91042 0.91323 0.89578 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.34 18.54 41.84 0.78 -6.56 16 2 C 0.27 4.16 12.78 -22.48 -0.29 3.87 16 3 C -0.16 -2.20 5.80 -106.13 -0.62 -2.82 16 4 C 0.45 5.52 7.77 -155.46 -1.21 4.31 16 5 N -0.84 -7.68 8.98 31.21 0.28 -7.40 16 6 N -0.56 -6.73 10.17 -8.47 -0.09 -6.82 16 7 C 0.21 2.38 6.63 -82.35 -0.55 1.83 16 8 C -0.18 -2.22 5.76 -104.23 -0.60 -2.82 16 9 C 0.13 1.85 5.37 -104.13 -0.56 1.29 16 10 C -0.18 -3.07 3.61 -104.88 -0.38 -3.45 16 11 C -0.04 -0.66 8.69 -39.25 -0.34 -1.00 16 12 C -0.24 -4.85 9.15 -39.45 -0.36 -5.21 16 13 C 0.17 3.86 6.65 -38.98 -0.26 3.60 16 14 O -0.17 -4.67 9.75 0.41 0.00 -4.67 16 15 C -0.39 -10.62 9.48 30.89 0.29 -10.33 16 16 H 0.10 2.35 5.19 -52.49 -0.27 2.08 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -24.50 13.67 55.48 0.76 -23.74 16 19 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.19 -3.99 9.98 -39.45 -0.39 -4.39 16 24 C -0.05 -0.81 9.07 -39.25 -0.36 -1.17 16 25 C -0.07 -0.74 4.46 -28.09 -0.13 -0.86 16 26 C -0.12 -1.04 5.99 -26.69 -0.16 -1.20 16 27 C -0.12 -0.87 5.97 -26.73 -0.16 -1.03 16 28 C -0.07 -0.57 5.90 -27.98 -0.17 -0.73 16 29 H 0.41 3.51 7.69 -40.82 -0.31 3.19 16 30 H 0.41 2.83 8.95 -40.82 -0.37 2.46 16 31 H 0.11 1.66 7.85 -52.49 -0.41 1.25 16 32 H 0.13 2.69 5.62 -52.49 -0.30 2.40 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 35 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.08 1.05 7.40 -51.93 -0.38 0.67 16 37 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 38 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -30.98 364.10 -9.08 -40.06 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.95 Total: 7.90 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -6.32 Total: -19.12 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 1.73 Total: -44.52 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.00 Total: -4.67 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.98 -9.08 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408980902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.107 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds