Wall clock time and date at job start Tue Mar 31 2020 04:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.40521 * 120.87722 * 186.25482 * 3 2 1 5 5 N 1.38415 * 119.85495 * 0.25948 * 4 3 2 6 6 N 1.31936 * 120.28568 * 180.23713 * 4 3 2 7 7 C 1.32949 * 122.91993 * 359.86664 * 6 4 3 8 8 C 1.37418 * 120.52756 * 359.54584 * 7 6 4 9 9 C 1.40277 * 119.38500 * 0.89541 * 8 7 6 10 10 C 1.48034 * 120.68512 * 179.52311 * 9 8 7 11 11 C 1.39582 * 120.06249 * 64.95204 * 10 9 8 12 12 C 1.37774 * 119.93169 * 180.23109 * 11 10 9 13 13 C 1.39045 * 120.06496 * 359.51488 * 12 11 10 14 14 O 1.35653 * 119.93882 * 180.25062 * 13 12 11 15 15 C 1.34807 * 116.99785 * 354.45574 * 14 13 12 16 16 H 1.08000 * 119.99979 * 5.05635 * 15 14 13 17 17 C 1.38671 * 120.00185 * 185.05091 * 15 14 13 18 18 N 1.31543 * 119.99823 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00445 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46721 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47444 * 119.99946 * 19 17 15 22 22 H 1.48503 * 109.46914 * 240.00201 * 19 17 15 23 23 C 1.39051 * 120.12771 * 0.28120 * 13 12 11 24 24 C 1.37768 * 120.06419 * 359.95158 * 23 13 12 25 25 C 1.50538 * 122.88182 * 180.51709 * 8 7 6 26 26 C 1.52755 * 110.66044 * 342.68590 * 25 8 7 27 27 C 1.53323 * 108.31097 * 50.66972 * 26 25 8 28 28 C 1.50821 * 117.22009 * 179.57643 * 7 6 4 29 29 H 0.97003 * 120.00225 * 359.97438 * 5 4 3 30 30 H 0.96997 * 119.99776 * 179.97438 * 5 4 3 31 31 H 1.07995 * 120.03753 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.96086 * 179.79563 * 12 11 10 33 33 H 0.97006 * 119.99896 * 179.97438 * 18 17 15 34 34 H 1.08004 * 119.97150 * 179.97438 * 23 13 12 35 35 H 1.08005 * 120.03238 * 180.02562 * 24 23 13 36 36 H 1.08996 * 109.38652 * 222.27612 * 25 8 7 37 37 H 1.09000 * 109.02305 * 102.86349 * 25 8 7 38 38 H 1.09000 * 109.69419 * 290.96168 * 26 25 8 39 39 H 1.08997 * 109.72562 * 170.39252 * 26 25 8 40 40 H 1.09005 * 109.67507 * 170.48648 * 27 26 25 41 41 H 1.08997 * 109.67477 * 49.95302 * 27 26 25 42 42 H 1.09000 * 109.24580 * 282.35848 * 28 7 6 43 43 H 1.09000 * 109.24728 * 41.80701 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2886 1.1998 0.1314 5 7 2.6113 2.3992 0.2684 6 7 4.6079 1.1874 0.1252 7 6 5.3193 0.0712 0.0005 8 6 4.6930 -1.1459 -0.1209 9 6 3.2913 -1.2007 -0.1313 10 6 2.5870 -2.4951 -0.2712 11 6 2.7005 -3.4644 0.7267 12 6 2.0476 -4.6701 0.5915 13 6 1.2681 -4.9178 -0.5329 14 8 0.6223 -6.1039 -0.6610 15 6 0.8690 -7.0396 0.2775 16 1 1.4902 -6.8006 1.1281 17 6 0.3253 -8.3089 0.1509 18 7 -0.4318 -8.5998 -0.8847 19 14 0.6666 -9.6054 1.4518 20 1 1.5393 -9.0302 2.5068 21 1 -0.6150 -10.0493 2.0565 22 1 1.3474 -10.7673 0.8260 23 6 1.1497 -3.9524 -1.5267 24 6 1.8041 -2.7468 -1.3991 25 6 5.4458 -2.4427 -0.2535 26 6 6.8960 -2.1852 -0.6584 27 6 7.4832 -1.1371 0.2942 28 6 6.8214 0.2071 -0.0001 29 1 1.6414 2.4107 0.2731 30 1 3.1067 3.2281 0.3596 31 1 3.3022 -3.2708 1.6024 32 1 2.1378 -5.4217 1.3618 33 1 -0.8119 -9.4879 -0.9734 34 1 0.5438 -4.1477 -2.3992 35 1 1.7115 -1.9972 -2.1711 36 1 4.9663 -3.0636 -1.0103 37 1 5.4271 -2.9639 0.7036 38 1 6.9309 -1.8119 -1.6819 39 1 7.4682 -3.1099 -0.5850 40 1 8.5588 -1.0590 0.1359 41 1 7.2837 -1.4263 1.3260 42 1 7.1496 0.5629 -0.9767 43 1 7.1174 0.9272 0.7627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408980902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:51 Heat of formation + Delta-G solvation = 29.366338 kcal Electronic energy + Delta-G solvation = -27675.390426 eV Core-core repulsion = 23877.519031 eV Total energy + Delta-G solvation = -3797.871394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.95399 -40.72533 -38.48737 -38.44840 -37.18988 -35.11999 -34.57281 -34.10234 -32.01416 -31.06641 -30.37573 -29.64312 -27.47112 -25.54262 -24.33848 -23.92546 -23.55989 -21.87214 -21.30969 -19.94610 -19.52078 -19.03423 -18.41709 -17.86719 -16.75221 -16.51032 -16.29963 -15.98305 -15.85362 -15.60542 -15.34108 -15.24799 -15.04870 -14.67749 -14.56089 -14.40972 -14.22269 -14.18739 -13.90131 -13.79481 -13.60419 -13.37337 -13.00449 -12.95696 -12.69202 -12.55602 -12.47669 -12.09793 -11.63635 -11.58985 -11.45353 -11.34889 -11.15742 -10.85839 -10.51974 -10.43880 -9.93159 -9.01889 -8.79927 -8.51124 -6.19233 -0.40893 0.21310 0.49543 0.64330 1.35442 1.43300 1.53930 1.58550 1.93175 2.15356 2.33208 2.69481 2.85148 2.87339 3.08811 3.30438 3.42438 3.56982 3.92991 3.99643 4.02179 4.06093 4.11423 4.18598 4.37873 4.43925 4.58625 4.62384 4.64406 4.78097 4.80967 4.89906 4.93067 5.07374 5.14676 5.17212 5.19498 5.26682 5.37886 5.43298 5.46141 5.57649 5.60019 5.60636 5.65334 5.97244 6.02583 6.10813 6.42389 6.46350 6.93189 7.14715 7.70720 8.71772 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.003192 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.836760 B = 8770.826933 C =10181.406503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.281 3.719 3 C -0.172 4.172 4 C 0.458 3.542 5 N -0.828 5.828 6 N -0.557 5.557 7 C 0.220 3.780 8 C -0.178 4.178 9 C 0.109 3.891 10 C -0.149 4.149 11 C -0.033 4.033 12 C -0.236 4.236 13 C 0.130 3.870 14 O -0.225 6.225 15 C -0.415 4.415 16 H 0.108 0.892 17 C -0.021 4.021 18 N -0.918 5.918 19 Si 1.019 2.981 20 H -0.247 1.247 21 H -0.271 1.271 22 H -0.267 1.267 23 C -0.203 4.203 24 C -0.045 4.045 25 C -0.068 4.068 26 C -0.119 4.119 27 C -0.114 4.114 28 C -0.068 4.068 29 H 0.412 0.588 30 H 0.420 0.580 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.274 0.726 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.795 19.237 3.869 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.033 4.033 3 C -0.183 4.183 4 C 0.214 3.786 5 N -0.371 5.371 6 N -0.276 5.276 7 C 0.083 3.917 8 C -0.183 4.183 9 C 0.099 3.901 10 C -0.150 4.150 11 C -0.051 4.051 12 C -0.255 4.255 13 C 0.079 3.921 14 O -0.130 6.130 15 C -0.490 4.490 16 H 0.125 0.875 17 C -0.219 4.219 18 N -0.555 5.555 19 Si 0.838 3.162 20 H -0.170 1.170 21 H -0.196 1.196 22 H -0.192 1.192 23 C -0.222 4.222 24 C -0.063 4.063 25 C -0.106 4.106 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.106 4.106 29 H 0.242 0.758 30 H 0.253 0.747 31 H 0.162 0.838 32 H 0.147 0.853 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.149 0.851 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.178 19.780 3.701 26.458 hybrid contribution -1.190 -1.371 0.076 1.817 sum 15.989 18.409 3.777 24.674 Atomic orbital electron populations 1.81270 1.12798 1.08027 1.11758 1.25445 0.92401 0.93036 0.92415 1.16408 0.84416 0.94567 1.22913 1.17888 0.88053 0.85196 0.87453 1.42148 1.09521 1.05775 1.79686 1.67148 1.04702 1.31645 1.24123 1.21351 0.97316 0.85767 0.87264 1.20300 0.91290 0.97434 1.09274 1.18904 0.92573 0.89755 0.88863 1.18281 1.04725 0.94455 0.97560 1.20969 0.96035 0.90534 0.97609 1.21179 1.04609 1.00079 0.99632 1.19966 0.90932 0.86909 0.94341 1.83926 1.59202 1.20351 1.49567 1.21939 1.33503 0.90677 1.02927 0.87513 1.26638 0.95421 0.99427 1.00418 1.70189 1.32242 1.22493 1.30614 0.84520 0.78780 0.76358 0.76514 1.17044 1.19606 1.19192 1.20271 1.07380 0.94728 0.99822 1.20796 0.93793 0.94790 0.96940 1.20327 0.95683 0.92386 1.02170 1.21598 0.93868 1.00287 0.99902 1.21582 1.00849 0.92891 0.99861 1.20581 0.85518 0.99726 1.04730 0.75776 0.74741 0.83754 0.85288 0.91718 0.86822 0.85121 0.92164 0.90552 0.91341 0.90252 0.88595 0.91341 0.88030 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.84 18.54 19.00 0.35 -15.49 16 2 C 0.28 8.42 12.78 88.33 1.13 9.55 16 3 C -0.17 -4.44 5.80 -20.84 -0.12 -4.56 16 4 C 0.46 9.74 7.77 133.74 1.04 10.78 16 5 N -0.83 -12.60 8.98 -55.17 -0.50 -13.09 16 6 N -0.56 -11.24 10.17 -180.72 -1.84 -13.08 16 7 C 0.22 4.12 6.63 42.23 0.28 4.40 16 8 C -0.18 -3.90 5.76 -19.61 -0.11 -4.01 16 9 C 0.11 2.91 5.37 -19.55 -0.10 2.81 16 10 C -0.15 -4.83 3.61 -20.03 -0.07 -4.91 16 11 C -0.03 -1.13 8.69 22.48 0.20 -0.93 16 12 C -0.24 -9.92 9.15 22.35 0.20 -9.72 16 13 C 0.13 6.42 6.65 22.66 0.15 6.57 16 14 O -0.22 -13.40 9.75 -21.44 -0.21 -13.61 16 15 C -0.41 -23.65 9.48 67.92 0.64 -23.01 16 16 H 0.11 5.51 5.19 -2.91 -0.02 5.50 16 17 C -0.02 -1.17 5.49 84.84 0.47 -0.71 16 18 N -0.92 -55.86 13.67 21.62 0.30 -55.57 16 19 Si 1.02 41.95 29.55 68.60 2.03 43.98 16 20 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 C -0.20 -8.86 9.98 22.35 0.22 -8.64 16 24 C -0.04 -1.62 9.07 22.48 0.20 -1.41 16 25 C -0.07 -1.35 4.46 29.72 0.13 -1.21 16 26 C -0.12 -1.61 5.99 30.62 0.18 -1.43 16 27 C -0.11 -1.13 5.97 30.60 0.18 -0.95 16 28 C -0.07 -0.79 5.90 29.78 0.18 -0.61 16 29 H 0.41 6.08 7.69 -92.71 -0.71 5.37 16 30 H 0.42 4.39 8.95 -92.71 -0.83 3.56 16 31 H 0.14 3.92 7.85 -2.91 -0.02 3.90 16 32 H 0.13 5.42 5.62 -2.91 -0.02 5.40 16 33 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 34 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 35 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.06 1.46 7.40 -2.39 -0.02 1.44 16 37 H 0.08 1.48 7.67 -2.39 -0.02 1.46 16 38 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -72.69 364.10 4.49 -68.20 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.45 Total: 26.65 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 4.80 Total: -27.99 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -1.69 Total: -97.23 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.21 Total: -13.61 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -72.69 4.49 -68.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408980902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.567 kcal (2) G-P(sol) polarization free energy of solvation -72.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds