Wall clock time and date at job start Tue Mar 31 2020 05:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36007 * 117.00235 * 2 1 4 4 C 1.38592 * 119.97891 * 0.02562 * 3 2 1 5 5 C 1.38668 * 120.41997 * 179.97438 * 4 3 2 6 6 C 1.37666 * 120.38774 * 359.97438 * 5 4 3 7 7 C 1.40189 * 119.95501 * 0.02562 * 6 5 4 8 8 C 1.46741 * 120.20391 * 180.02562 * 7 6 5 9 9 N 1.30684 * 119.99691 * 184.70327 * 8 7 6 10 10 N 1.40099 * 119.99489 * 181.21226 * 9 8 7 11 11 C 1.34775 * 119.99406 * 185.29408 * 10 9 8 12 12 O 1.21963 * 120.00575 * 4.95683 * 11 10 9 13 13 C 1.40757 * 119.99754 * 184.95465 * 11 10 9 14 14 H 1.08000 * 120.00024 * 7.80927 * 13 11 10 15 15 C 1.40213 * 120.00308 * 187.79950 * 13 11 10 16 16 N 1.30609 * 119.99561 * 7.80515 * 15 13 11 17 17 Si 1.86796 * 120.00442 * 187.80005 * 15 13 11 18 18 H 1.48507 * 109.47065 * 94.98401 * 17 15 13 19 19 H 1.48490 * 109.47330 * 214.98516 * 17 15 13 20 20 H 1.48501 * 109.47109 * 334.98804 * 17 15 13 21 21 C 1.38974 * 119.98965 * 180.27611 * 3 2 1 22 22 O 1.35766 * 120.19288 * 0.02562 * 21 3 2 23 23 C 1.42900 * 116.99637 * 280.62951 * 22 21 3 24 24 H 1.09005 * 109.47341 * 36.39618 * 23 22 21 25 25 C 1.53000 * 109.47379 * 276.39359 * 23 22 21 26 26 C 1.50700 * 109.46875 * 156.39237 * 23 22 21 27 27 O 1.20823 * 120.00538 * 5.00217 * 26 23 22 28 28 O 1.34236 * 119.99868 * 184.99862 * 26 23 22 29 29 H 1.09003 * 109.47805 * 59.99849 * 1 2 3 30 30 H 1.09005 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47688 * 299.99404 * 1 2 3 32 32 H 1.07997 * 119.79407 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.81337 * 179.97438 * 5 4 3 34 34 H 1.07996 * 120.02152 * 180.02562 * 6 5 4 35 35 H 1.08001 * 119.99892 * 4.42119 * 8 7 6 36 36 H 0.96997 * 120.00206 * 5.29358 * 10 9 8 37 37 H 0.96996 * 119.99345 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.47321 * 178.80069 * 25 23 22 39 39 H 1.09005 * 109.46853 * 298.80424 * 25 23 22 40 40 H 1.09004 * 109.46724 * 58.79688 * 25 23 22 41 41 H 0.96696 * 117.00004 * 180.02562 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2912 2.3739 0.0005 5 6 1.9113 3.6142 0.0011 6 6 3.2849 3.7061 0.0016 7 6 4.0644 2.5409 0.0011 8 6 5.5289 2.6325 0.0022 9 7 6.2515 1.5475 -0.0911 10 7 7.6496 1.6327 -0.0644 11 6 8.3958 0.5289 -0.2674 12 8 7.8581 -0.5249 -0.5635 13 6 9.7960 0.5924 -0.1377 14 1 10.2627 1.4877 0.2457 15 6 10.5848 -0.5067 -0.5060 16 7 10.0397 -1.5286 -1.1096 17 14 12.4153 -0.5094 -0.1336 18 1 12.6582 -1.2154 1.1501 19 1 13.1417 -1.2049 -1.2262 20 1 12.9011 0.8899 -0.0285 21 6 3.4343 1.2842 -0.0058 22 8 4.1773 0.1479 -0.0120 23 6 4.3411 -0.5268 1.2370 24 1 3.4209 -0.4481 1.8160 25 6 5.4906 0.1150 2.0165 26 6 4.6538 -1.9795 0.9858 27 8 4.8180 -2.3757 -0.1437 28 8 4.7499 -2.8333 2.0172 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 0.2130 2.3131 0.0014 33 1 1.3132 4.5135 0.0011 34 1 3.7616 4.6751 0.0025 35 1 6.0096 3.5968 0.0756 36 1 8.0805 2.4860 0.1001 37 1 10.5854 -2.2888 -1.3647 38 1 5.6017 -0.3859 2.9781 39 1 6.4149 0.0173 1.4469 40 1 5.2741 1.1708 2.1795 41 1 4.9525 -3.7550 1.8066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409221443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:26 Heat of formation + Delta-G solvation = -110.209277 kcal Electronic energy + Delta-G solvation = -29986.356301 eV Core-core repulsion = 25641.571777 eV Total energy + Delta-G solvation = -4344.784524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54455 -39.61941 -38.18774 -37.48032 -36.87040 -35.48615 -35.04747 -32.66087 -31.82991 -31.40654 -29.60622 -29.08785 -27.31852 -26.45657 -24.76952 -23.44237 -22.30548 -20.86508 -20.62676 -19.75980 -18.09268 -17.71637 -17.28718 -16.96034 -16.65380 -16.62018 -15.68807 -15.52787 -15.49220 -15.22115 -14.92017 -14.29027 -14.08508 -13.95392 -13.69655 -13.30482 -13.02775 -12.66061 -12.61872 -12.44193 -12.13427 -11.96455 -11.80366 -11.43757 -11.37911 -11.26198 -11.19694 -11.03963 -10.97452 -10.67452 -10.58982 -10.35664 -9.93349 -9.68304 -9.18962 -9.06280 -8.77497 -8.08400 -7.68099 -7.26402 -6.40223 -4.90353 0.94591 1.35288 2.77456 2.83015 3.02317 3.07551 3.12312 3.16302 3.21486 3.71172 3.84101 4.10263 4.33489 4.47638 4.76540 4.92247 5.01957 5.04793 5.18568 5.22025 5.23041 5.36562 5.38981 5.45384 5.54921 5.71044 5.78202 5.98701 6.08863 6.13126 6.17271 6.30207 6.39975 6.67055 6.72708 6.93151 6.96725 7.22502 7.23592 7.85363 7.89733 8.01710 8.43944 8.69054 8.79435 9.31098 10.41740 10.67928 Molecular weight = 336.12amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.003826 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.833391 B = 7316.005988 C = 8633.612032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.104 3.896 4 C -0.206 4.206 5 C -0.085 4.085 6 C -0.134 4.134 7 C 0.013 3.987 8 C -0.013 4.013 9 N -0.138 5.138 10 N -0.589 5.589 11 C 0.556 3.444 12 O -0.539 6.539 13 C -0.540 4.540 14 H 0.070 0.930 15 C 0.090 3.910 16 N -0.743 5.743 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.263 1.263 21 C 0.082 3.918 22 O -0.264 6.264 23 C 0.126 3.874 24 H 0.084 0.916 25 C -0.172 4.172 26 C 0.481 3.519 27 O -0.471 6.471 28 O -0.522 6.522 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.367 0.633 37 H 0.275 0.725 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.194 7.922 7.072 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.058 3.942 4 C -0.226 4.226 5 C -0.103 4.103 6 C -0.155 4.155 7 C 0.010 3.990 8 C -0.220 4.220 9 N 0.051 4.949 10 N -0.336 5.336 11 C 0.364 3.636 12 O -0.417 6.417 13 C -0.577 4.577 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.370 5.370 17 Si 0.739 3.261 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.187 1.187 21 C 0.034 3.966 22 O -0.179 6.179 23 C 0.068 3.932 24 H 0.101 0.899 25 C -0.229 4.229 26 C 0.320 3.680 27 O -0.354 6.354 28 O -0.335 6.335 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.129 0.871 36 H 0.203 0.797 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -16.201 5.919 6.260 18.350 hybrid contribution 1.058 1.027 0.247 1.495 sum -15.144 6.946 6.506 17.886 Atomic orbital electron populations 1.23057 0.78775 1.03866 1.01131 1.86207 1.20987 1.26299 1.88592 1.19459 0.91624 0.84958 0.98111 1.21150 0.99753 0.91871 1.09874 1.20763 0.94329 0.96732 0.98469 1.21011 0.93262 0.97106 1.04113 1.18680 0.91354 0.91250 0.97719 1.23777 0.92084 0.94976 1.11166 1.75345 0.93354 1.25586 1.00645 1.48397 0.98894 1.13058 1.73221 1.16842 0.86631 0.81374 0.78744 1.90799 1.72751 1.27856 1.50281 1.19753 0.90218 1.02022 1.45710 0.91145 1.25737 1.00537 0.94411 0.92656 1.69983 1.36976 1.04698 1.25382 0.86240 0.81800 0.79304 0.78788 1.19501 1.20215 1.18689 1.18254 0.85699 0.86726 1.05900 1.86307 1.69306 1.34834 1.27410 1.21240 0.99672 0.86425 0.85837 0.89878 1.22487 1.00528 1.00248 0.99685 1.22768 0.74114 0.88390 0.82710 1.90775 1.42750 1.77997 1.23904 1.84418 1.84159 1.24389 1.40541 0.92647 0.88369 0.92775 0.85361 0.85503 0.85057 0.87148 0.79712 0.91431 0.91687 0.87834 0.91876 0.73202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.51 10.24 -34.38 -0.35 -4.86 16 3 C 0.10 1.55 6.55 -39.18 -0.26 1.30 16 4 C -0.21 -2.34 9.04 -39.29 -0.36 -2.69 16 5 C -0.08 -0.87 10.02 -39.63 -0.40 -1.26 16 6 C -0.13 -1.57 9.80 -39.06 -0.38 -1.95 16 7 C 0.01 0.20 5.73 -104.85 -0.60 -0.40 16 8 C -0.01 -0.23 9.84 -14.61 -0.14 -0.37 16 9 N -0.14 -3.05 5.79 32.13 0.19 -2.86 16 10 N -0.59 -13.77 6.05 28.94 0.18 -13.60 16 11 C 0.56 15.94 7.01 -15.31 -0.11 15.83 16 12 O -0.54 -17.89 14.75 4.95 0.07 -17.82 16 13 C -0.54 -14.85 9.26 -37.89 -0.35 -15.20 16 14 H 0.07 1.74 7.86 -52.49 -0.41 1.32 16 15 C 0.09 2.46 5.47 -17.33 -0.09 2.36 16 16 N -0.74 -22.00 11.82 55.56 0.66 -21.34 16 17 Si 0.91 19.52 29.57 -169.99 -5.03 14.49 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 C 0.08 1.46 5.54 -38.43 -0.21 1.24 16 22 O -0.26 -5.67 7.27 -46.67 -0.34 -6.01 16 23 C 0.13 2.41 3.24 -27.88 -0.09 2.32 16 24 H 0.08 1.35 7.88 -51.93 -0.41 0.94 16 25 C -0.17 -3.27 7.82 37.16 0.29 -2.98 16 26 C 0.48 9.99 7.66 36.01 0.28 10.26 16 27 O -0.47 -11.95 17.26 -25.46 -0.44 -12.39 16 28 O -0.52 -8.44 13.42 -39.27 -0.53 -8.97 16 29 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 32 H 0.13 1.08 6.27 -52.49 -0.33 0.75 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.11 1.54 8.04 -52.49 -0.42 1.12 16 36 H 0.37 7.20 8.63 -182.60 -1.58 5.63 16 37 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 2.47 5.20 -51.93 -0.27 2.20 16 40 H 0.06 1.09 6.89 -51.93 -0.36 0.73 16 41 H 0.41 4.89 9.10 45.56 0.41 5.30 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -40.06 360.14 -6.58 -46.64 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -4.98 Total: 11.59 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.43 Total: 9.70 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 1.02 Total: -37.80 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -1.59 Total: -50.05 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -40.06 -6.58 -46.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409221443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.567 kcal (2) G-P(sol) polarization free energy of solvation -40.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds