Wall clock time and date at job start Tue Mar 31 2020 05:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.36002 * 116.99897 * 2 1 4 4 C 1.38594 * 119.98517 * 0.22752 * 3 2 1 5 5 C 1.38673 * 120.41795 * 180.27853 * 4 3 2 6 6 C 1.37656 * 120.38601 * 359.74868 * 5 4 3 7 7 C 1.40183 * 119.96102 * 359.97438 * 6 5 4 8 8 C 1.46743 * 120.20382 * 179.97438 * 7 6 5 9 9 N 1.30677 * 120.00097 * 354.84202 * 8 7 6 10 10 N 1.40096 * 119.99953 * 185.02174 * 9 8 7 11 11 C 1.34774 * 120.00099 * 185.02945 * 10 9 8 12 12 O 1.21964 * 120.00183 * 4.91754 * 11 10 9 13 13 C 1.40758 * 120.00060 * 184.91780 * 11 10 9 14 14 H 1.07997 * 119.99919 * 0.02562 * 13 11 10 15 15 C 1.40216 * 119.99896 * 179.97438 * 13 11 10 16 16 N 1.30592 * 120.00333 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99581 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47207 * 60.00446 * 17 15 13 19 19 H 1.48507 * 109.47004 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47239 * 300.00303 * 17 15 13 21 21 C 1.38971 * 119.98641 * 180.02562 * 3 2 1 22 22 O 1.35769 * 120.18963 * 359.97438 * 21 3 2 23 23 C 1.42899 * 117.00190 * 264.32534 * 22 21 3 24 24 H 1.09000 * 109.47325 * 336.57080 * 23 22 21 25 25 C 1.53006 * 109.46792 * 96.57054 * 23 22 21 26 26 C 1.50704 * 109.47153 * 216.56871 * 23 22 21 27 27 O 1.20827 * 120.00056 * 354.11150 * 26 23 22 28 28 O 1.34229 * 119.99941 * 174.11485 * 26 23 22 29 29 H 1.08996 * 109.46792 * 299.99884 * 1 2 3 30 30 H 1.09000 * 109.46800 * 60.00281 * 1 2 3 31 31 H 1.08996 * 109.46646 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.78914 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.80293 * 179.76793 * 5 4 3 34 34 H 1.08004 * 120.01372 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.99580 * 174.83835 * 8 7 6 36 36 H 0.97005 * 119.99966 * 5.02557 * 10 9 8 37 37 H 0.97000 * 120.00525 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47165 * 59.99927 * 25 23 22 39 39 H 1.09001 * 109.47157 * 180.02562 * 25 23 22 40 40 H 1.09001 * 109.46870 * 299.99827 * 25 23 22 41 41 H 0.96700 * 116.99902 * 180.02562 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2914 2.3739 0.0048 5 6 1.9115 3.6142 -0.0010 6 6 3.2850 3.7060 -0.0063 7 6 4.0645 2.5408 -0.0054 8 6 5.5290 2.6324 -0.0116 9 7 6.1104 3.7977 -0.1198 10 7 7.5046 3.8773 -0.2317 11 6 8.1124 5.0801 -0.2411 12 8 7.4595 6.0947 -0.0625 13 6 9.5006 5.1656 -0.4572 14 1 10.0787 4.2672 -0.6159 15 6 10.1328 6.4171 -0.4676 16 7 9.4337 7.5034 -0.2763 17 14 11.9751 6.5304 -0.7551 18 1 12.3057 5.9505 -2.0817 19 1 12.3949 7.9545 -0.7195 20 1 12.6891 5.7765 0.3065 21 6 3.4343 1.2842 -0.0005 22 8 4.1773 0.1479 -0.0005 23 6 4.6382 -0.3260 1.2664 24 1 4.6715 0.5025 1.9739 25 6 3.6833 -1.4026 1.7863 26 6 6.0185 -0.9107 1.1121 27 8 6.5099 -1.0181 0.0135 28 8 6.7021 -1.3124 2.1952 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 0.2131 2.3131 0.0089 33 1 1.3134 4.5134 -0.0010 34 1 3.7617 4.6751 -0.0104 35 1 6.1264 1.7367 0.0733 36 1 8.0326 3.0665 -0.3023 37 1 9.8711 8.3692 -0.2831 38 1 3.6500 -2.2310 1.0787 39 1 4.0346 -1.7637 2.7529 40 1 2.6850 -0.9796 1.8978 41 1 7.5838 -1.6806 2.0463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409221444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:29 Heat of formation + Delta-G solvation = -126.404026 kcal Electronic energy + Delta-G solvation = -28650.236246 eV Core-core repulsion = 24304.749466 eV Total energy + Delta-G solvation = -4345.486781 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87765 -40.13612 -38.39334 -37.71571 -37.07109 -36.15653 -35.12198 -32.72606 -32.33757 -31.60050 -29.71215 -29.16142 -27.43506 -26.56613 -25.39471 -23.51024 -22.60544 -21.40087 -20.65839 -19.75930 -18.56052 -18.12243 -17.50597 -17.26446 -17.01967 -16.87829 -15.89093 -15.86464 -15.60738 -15.43233 -15.02888 -14.66189 -14.31044 -14.17982 -13.83015 -13.43739 -13.41237 -13.19307 -12.72963 -12.65102 -12.45422 -12.29688 -11.92570 -11.79712 -11.65231 -11.60011 -11.45223 -11.27068 -11.16240 -10.77530 -10.67551 -10.60841 -10.43018 -10.12884 -9.61639 -9.13868 -8.86301 -8.21098 -7.82011 -7.35806 -6.43109 -4.98518 0.79888 1.30724 2.03667 2.46211 2.74159 3.01106 3.06203 3.10187 3.12471 3.57982 3.68982 3.97575 4.07774 4.41270 4.65338 4.70987 4.72469 4.82367 4.93042 4.97339 5.00040 5.10881 5.25126 5.26609 5.42221 5.45552 5.51742 5.66851 5.71447 5.85132 5.90374 6.15121 6.23247 6.31174 6.56701 6.66367 6.69988 6.97599 7.18094 7.48889 7.74292 7.78708 7.95177 8.57123 8.73035 9.22709 10.35523 10.58720 Molecular weight = 336.12amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003020 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.738782 B = 9268.330402 C =11079.148405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.119 3.881 4 C -0.205 4.205 5 C -0.077 4.077 6 C -0.117 4.117 7 C 0.011 3.989 8 C 0.008 3.992 9 N -0.170 5.170 10 N -0.583 5.583 11 C 0.556 3.444 12 O -0.552 6.552 13 C -0.534 4.534 14 H 0.071 0.929 15 C 0.088 3.912 16 N -0.744 5.744 17 Si 0.918 3.082 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.265 1.265 21 C 0.059 3.941 22 O -0.287 6.287 23 C 0.098 3.902 24 H 0.103 0.897 25 C -0.160 4.160 26 C 0.475 3.525 27 O -0.489 6.489 28 O -0.513 6.513 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.371 0.629 37 H 0.276 0.724 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.086 -16.900 5.171 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.074 3.926 4 C -0.225 4.225 5 C -0.096 4.096 6 C -0.137 4.137 7 C 0.008 3.992 8 C -0.200 4.200 9 N 0.018 4.982 10 N -0.329 5.329 11 C 0.365 3.635 12 O -0.432 6.432 13 C -0.571 4.571 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.371 5.371 17 Si 0.742 3.258 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.190 1.190 21 C 0.012 3.988 22 O -0.203 6.203 23 C 0.040 3.960 24 H 0.121 0.879 25 C -0.218 4.218 26 C 0.315 3.685 27 O -0.374 6.374 28 O -0.327 6.327 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.163 0.837 35 H 0.124 0.876 36 H 0.207 0.793 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -15.579 -15.061 4.840 22.203 hybrid contribution 1.805 -1.290 -0.165 2.225 sum -13.775 -16.351 4.675 21.885 Atomic orbital electron populations 1.23069 0.78757 1.03803 1.01364 1.86166 1.20901 1.26132 1.88695 1.19011 0.90721 0.84919 0.97980 1.21198 0.99848 0.91783 1.09705 1.20966 0.94544 0.96967 0.97086 1.21438 0.93092 0.98746 1.00435 1.18633 0.91390 0.91529 0.97608 1.23648 0.93067 0.94268 1.09014 1.74775 0.97164 1.23635 1.02576 1.48204 0.98956 1.11161 1.74538 1.16841 0.88022 0.79760 0.78839 1.90720 1.66119 1.33037 1.53289 1.19743 0.91735 0.94232 1.51399 0.91044 1.25770 1.00352 0.94886 0.92579 1.69990 1.37040 0.98660 1.31370 0.86252 0.81674 0.78031 0.79862 1.18915 1.20188 1.18957 1.17876 0.86207 0.84862 1.09864 1.86180 1.68539 1.39256 1.26280 1.21678 0.88264 0.98633 0.87403 0.87917 1.22164 0.99713 0.98346 1.01554 1.23229 0.87704 0.75401 0.82132 1.90773 1.69122 1.50291 1.27264 1.84472 1.34638 1.74979 1.38564 0.92690 0.92612 0.88353 0.85089 0.85158 0.83707 0.87609 0.79301 0.91343 0.91044 0.90343 0.90025 0.72622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.33 9.26 -34.37 -0.32 -3.65 16 3 C 0.12 1.49 6.69 -39.18 -0.26 1.23 16 4 C -0.21 -2.22 9.04 -39.29 -0.36 -2.57 16 5 C -0.08 -0.93 10.02 -39.63 -0.40 -1.32 16 6 C -0.12 -1.80 9.58 -39.06 -0.37 -2.17 16 7 C 0.01 0.19 5.89 -104.85 -0.62 -0.43 16 8 C 0.01 0.15 10.39 -14.61 -0.15 0.00 16 9 N -0.17 -3.93 10.21 32.13 0.33 -3.61 16 10 N -0.58 -14.38 6.25 28.94 0.18 -14.20 16 11 C 0.56 16.31 7.65 -15.31 -0.12 16.19 16 12 O -0.55 -18.37 15.21 4.95 0.08 -18.29 16 13 C -0.53 -14.91 9.27 -37.89 -0.35 -15.26 16 14 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 15 C 0.09 2.39 5.50 -17.34 -0.10 2.29 16 16 N -0.74 -21.71 11.71 55.56 0.65 -21.06 16 17 Si 0.92 19.44 29.56 -169.99 -5.02 14.42 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 C 0.06 0.87 5.59 -38.43 -0.21 0.66 16 22 O -0.29 -4.31 8.28 -46.67 -0.39 -4.70 16 23 C 0.10 1.18 2.91 -27.88 -0.08 1.10 16 24 H 0.10 1.17 7.84 -51.93 -0.41 0.76 16 25 C -0.16 -1.47 9.53 37.16 0.35 -1.12 16 26 C 0.48 6.08 7.41 36.01 0.27 6.35 16 27 O -0.49 -8.04 17.27 -25.46 -0.44 -8.48 16 28 O -0.51 -4.83 13.42 -39.26 -0.53 -5.35 16 29 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.13 1.01 6.27 -52.49 -0.33 0.68 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.15 2.50 7.56 -52.48 -0.40 2.10 16 35 H 0.11 1.94 7.11 -52.49 -0.37 1.56 16 36 H 0.37 7.99 8.63 -182.60 -1.58 6.42 16 37 H 0.28 7.20 8.29 -40.82 -0.34 6.86 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.72 7.11 -51.93 -0.37 0.35 16 41 H 0.41 2.23 9.10 45.56 0.41 2.64 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -38.45 369.32 -6.37 -44.82 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.07 Total: 8.42 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.40 Total: 6.10 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 1.16 Total: -38.86 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -1.60 Total: -40.46 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.45 -6.37 -44.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409221444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.581 kcal (2) G-P(sol) polarization free energy of solvation -38.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds