Wall clock time and date at job start Tue Mar 31 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.41033 * 127.42617 * 2 1 4 4 C 1.39883 * 126.00227 * 359.96602 * 3 2 1 5 5 C 1.37804 * 120.75355 * 179.97438 * 4 3 2 6 6 C 1.38253 * 119.89270 * 0.02562 * 5 4 3 7 7 C 1.37799 * 119.89585 * 0.02562 * 6 5 4 8 8 C 1.38483 * 114.64556 * 179.97438 * 3 2 1 9 9 N 1.41031 * 114.63962 * 0.02562 * 8 3 2 10 10 C 1.46504 * 127.42298 * 180.02562 * 9 8 3 11 11 C 1.53036 * 109.45707 * 299.99391 * 10 9 8 12 12 C 1.53173 * 109.32579 * 181.38629 * 11 10 9 13 13 N 1.46921 * 108.76821 * 305.35560 * 12 11 10 14 14 C 1.36932 * 120.63360 * 233.63500 * 13 12 11 15 15 H 1.08001 * 120.00859 * 151.80725 * 14 13 12 16 16 C 1.38814 * 119.99659 * 331.80042 * 14 13 12 17 17 N 1.31627 * 119.99987 * 343.09709 * 16 14 13 18 18 Si 1.86799 * 119.99883 * 163.09101 * 16 14 13 19 19 H 1.48505 * 109.47234 * 60.00768 * 18 16 14 20 20 H 1.48508 * 109.47069 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47489 * 299.99968 * 18 16 14 22 22 C 1.46931 * 118.73776 * 53.60610 * 13 12 11 23 23 C 1.53037 * 109.45946 * 60.04967 * 10 9 8 24 24 S 1.66638 * 105.15154 * 0.25760 * 9 8 3 25 25 O 1.42094 * 107.43346 * 111.88671 * 24 9 8 26 26 O 1.42098 * 107.43204 * 247.59774 * 24 9 8 27 27 H 1.08998 * 109.47140 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47597 * 120.01906 * 1 2 3 29 29 H 1.09004 * 109.46527 * 240.02110 * 1 2 3 30 30 H 1.08000 * 119.62957 * 0.04585 * 4 3 2 31 31 H 1.07991 * 120.05729 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.04985 * 180.02562 * 6 5 4 33 33 H 1.08001 * 119.62366 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.45691 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.50251 * 301.32192 * 11 10 9 36 36 H 1.09007 * 109.50147 * 61.42287 * 11 10 9 37 37 H 1.08997 * 109.58626 * 185.57347 * 12 11 10 38 38 H 1.09002 * 109.70311 * 65.21363 * 12 11 10 39 39 H 0.96996 * 119.99377 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.58689 * 186.60458 * 22 13 12 41 41 H 1.08999 * 109.70176 * 66.25460 * 22 13 12 42 42 H 1.09003 * 109.50195 * 298.57625 * 23 10 9 43 43 H 1.08999 * 109.49947 * 58.67657 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3221 1.1200 0.0000 4 6 1.9231 2.4607 -0.0007 5 6 2.8572 3.4739 -0.0001 6 6 4.2055 3.1680 0.0007 7 6 4.6110 1.8510 0.0003 8 6 3.6726 0.8136 0.0006 9 7 3.9624 -0.5666 0.0005 10 6 5.2840 -1.1988 0.0015 11 6 6.0563 -0.7677 -1.2474 12 6 7.4239 -1.4573 -1.2610 13 7 8.1123 -1.1668 0.0041 14 6 9.3735 -0.6335 0.0056 15 1 9.6982 -0.0169 0.8307 16 6 10.2349 -0.8855 -1.0534 17 7 9.9877 -1.8790 -1.8807 18 14 11.7447 0.1853 -1.3044 19 1 12.6165 0.1009 -0.1051 20 1 12.4944 -0.2874 -2.4960 21 1 11.3236 1.5941 -1.5120 22 6 7.4215 -1.4588 1.2675 23 6 6.0537 -0.7692 1.2525 24 16 2.4778 -1.3234 -0.0076 25 8 2.3341 -1.9656 -1.2669 26 8 2.3271 -1.9784 1.2444 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3634 -0.5141 -0.8898 29 1 -0.3632 -0.5135 0.8902 30 1 0.8710 2.7047 -0.0005 31 1 2.5366 4.5051 -0.0002 32 1 4.9397 3.9600 0.0016 33 1 5.6653 1.6171 0.0005 34 1 5.1681 -2.2826 0.0006 35 1 5.4965 -1.0532 -2.1380 36 1 6.1941 0.3136 -1.2349 37 1 8.0157 -1.0788 -2.0943 38 1 7.2915 -2.5341 -1.3661 39 1 10.5894 -2.0548 -2.6208 40 1 8.0119 -1.0815 2.1025 41 1 7.2869 -2.5354 1.3724 42 1 6.1916 0.3120 1.2416 43 1 5.4920 -1.0558 2.1416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575414162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:02 Heat of formation + Delta-G solvation = 6.424806 kcal Electronic energy + Delta-G solvation = -28370.951941 eV Core-core repulsion = 24544.385105 eV Total energy + Delta-G solvation = -3826.566836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.49542 -38.01479 -37.32829 -36.07880 -35.99360 -35.34046 -32.65606 -30.65547 -30.42036 -29.91261 -28.62813 -26.84522 -25.14114 -23.05191 -22.26635 -22.21153 -21.45672 -19.96938 -19.31485 -17.84070 -17.45011 -17.14832 -16.60297 -16.52976 -15.94005 -14.88441 -14.71091 -14.56613 -14.46203 -14.19541 -13.79000 -13.67623 -13.59306 -13.29024 -13.14180 -12.99429 -12.83410 -12.39513 -12.28470 -12.17127 -11.99708 -11.66047 -11.51703 -11.42120 -11.22867 -11.03603 -10.83817 -10.75342 -10.72318 -10.35750 -10.25946 -9.95305 -9.65615 -9.58085 -8.59866 -8.50046 -7.84919 -6.75099 -5.84050 -3.26947 0.11529 1.20502 1.23885 2.20827 2.86011 3.36113 3.42496 3.42880 3.61154 3.87370 4.01141 4.45519 4.63978 4.74591 4.94136 4.97376 5.06160 5.08693 5.15957 5.26755 5.32445 5.34125 5.39525 5.43059 5.46969 5.58382 5.74805 5.96373 6.08328 6.11190 6.19245 6.24228 6.33338 6.38619 6.43509 6.55481 6.57228 6.67643 6.74993 6.87910 6.92727 7.27052 7.57750 7.75048 8.39272 9.15105 9.77951 10.34263 11.24724 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.003920 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.443212 B = 7141.703924 C = 8086.909078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.938 5.938 3 C 0.082 3.918 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.109 4.109 7 C -0.097 4.097 8 C 0.111 3.889 9 N -0.922 5.922 10 C 0.184 3.816 11 C -0.152 4.152 12 C 0.172 3.828 13 N -0.590 5.590 14 C -0.256 4.256 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.146 3.854 23 C -0.145 4.145 24 S 2.761 3.239 25 O -0.959 6.959 26 O -0.961 6.961 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.023 0.977 39 H 0.256 0.744 40 H 0.062 0.938 41 H 0.022 0.978 42 H 0.071 0.929 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.468 9.023 3.592 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.768 5.768 3 C -0.017 4.017 4 C -0.128 4.128 5 C -0.137 4.137 6 C -0.129 4.129 7 C -0.119 4.119 8 C 0.011 3.989 9 N -0.751 5.751 10 C 0.082 3.918 11 C -0.193 4.193 12 C 0.045 3.955 13 N -0.313 5.313 14 C -0.386 4.386 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.019 3.981 23 C -0.186 4.186 24 S 2.773 3.227 25 O -0.941 6.941 26 O -0.943 6.943 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.163 0.837 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.090 0.910 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.697 7.607 3.446 20.477 hybrid contribution 0.740 0.896 -0.222 1.183 sum -17.957 8.503 3.223 20.128 Atomic orbital electron populations 1.21452 0.74652 1.04556 1.02267 1.55492 1.14607 1.20340 1.86359 1.18015 0.86321 0.90304 1.07089 1.20345 1.00129 0.88727 1.03608 1.20819 0.92768 0.98708 1.01362 1.20941 0.96095 0.95696 1.00175 1.20887 0.99588 0.90599 1.00853 1.18011 0.91344 0.85490 1.04096 1.56155 1.22281 1.11702 1.84946 1.21057 0.77138 0.95423 0.98163 1.22737 0.99133 1.02416 0.95041 1.20821 0.87878 0.96062 0.90754 1.44107 1.14461 1.73423 0.99322 1.19134 0.89094 1.23582 1.06769 0.91554 1.25061 0.97617 0.96868 0.99851 1.70011 1.38591 1.27821 1.18111 0.86362 0.82640 0.80322 0.77365 1.20870 1.21643 1.20981 1.20905 0.90414 0.96219 0.90595 1.22544 0.98125 1.02335 0.95604 1.03179 0.73027 0.71358 0.75104 1.93685 1.84629 1.72463 1.43334 1.93674 1.84623 1.72066 1.43932 0.89373 0.91085 0.91074 0.85474 0.85244 0.84957 0.83747 0.89435 0.92236 0.91330 0.88737 0.95916 0.93448 0.91994 0.96039 0.91034 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.93 11.40 59.84 0.68 1.61 16 2 N -0.94 -11.70 3.67 -65.09 -0.24 -11.93 16 3 C 0.08 1.04 6.64 -82.91 -0.55 0.49 16 4 C -0.11 -1.05 9.70 -39.12 -0.38 -1.43 16 5 C -0.12 -1.07 10.04 -39.73 -0.40 -1.46 16 6 C -0.11 -1.15 10.04 -39.74 -0.40 -1.55 16 7 C -0.10 -1.29 8.34 -39.13 -0.33 -1.61 16 8 C 0.11 1.60 6.26 -82.91 -0.52 1.08 16 9 N -0.92 -14.77 3.08 -51.83 -0.16 -14.93 16 10 C 0.18 3.21 2.77 -67.89 -0.19 3.02 16 11 C -0.15 -2.87 5.39 -26.62 -0.14 -3.01 16 12 C 0.17 3.94 5.30 -3.72 -0.02 3.92 16 13 N -0.59 -14.08 2.99 -172.33 -0.52 -14.60 16 14 C -0.26 -6.72 9.58 -15.06 -0.14 -6.87 16 15 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 16 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 17 N -0.90 -25.42 11.20 55.49 0.62 -24.80 16 18 Si 0.90 21.03 29.59 -169.99 -5.03 16.01 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.15 2.93 6.52 -3.71 -0.02 2.91 16 23 C -0.15 -2.49 5.39 -26.61 -0.14 -2.63 16 24 S 2.76 43.49 6.44 -107.50 -0.69 42.80 16 25 O -0.96 -17.33 18.18 -56.99 -1.04 -18.36 16 26 O -0.96 -16.99 18.17 -56.99 -1.04 -18.03 16 27 H 0.09 0.49 6.89 -51.93 -0.36 0.13 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.13 0.91 7.06 -52.49 -0.37 0.54 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.14 2.08 4.85 -52.49 -0.25 1.82 16 34 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.26 5.78 -51.92 -0.30 0.96 16 37 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.20 5.79 -51.93 -0.30 0.90 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -32.73 350.57 -11.11 -43.84 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.66 Total: 0.21 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.64 Total: -5.48 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.29 Total: -66.26 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -2.07 Total: -36.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.01 kcal Atomic # 16 Polarization: 43.49 SS G_CDS: -0.69 Total: 42.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.73 -11.11 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575414162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.265 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds