Wall clock time and date at job start Tue Mar 31 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47327 * 2 1 4 4 H 1.09003 * 109.46967 * 55.00047 * 3 2 1 5 5 C 1.50699 * 109.47428 * 174.99816 * 3 2 1 6 6 H 1.07998 * 120.00321 * 120.00256 * 5 3 2 7 7 C 1.37874 * 119.99908 * 300.00102 * 5 3 2 8 8 N 1.31516 * 120.00486 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99882 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47128 * 90.00016 * 9 7 5 11 11 H 1.48496 * 109.47158 * 209.99819 * 9 7 5 12 12 H 1.48494 * 109.47126 * 329.99932 * 9 7 5 13 13 N 1.46497 * 109.47196 * 295.00089 * 3 2 1 14 14 C 1.34785 * 120.00303 * 84.99580 * 13 3 2 15 15 O 1.21669 * 119.99488 * 0.02562 * 14 13 3 16 16 C 1.46886 * 120.00103 * 180.02562 * 14 13 3 17 17 C 1.36384 * 126.75963 * 359.95652 * 16 14 13 18 18 N 1.35452 * 109.77582 * 180.02562 * 17 16 14 19 19 H 0.96994 * 124.79950 * 179.97438 * 18 17 16 20 20 C 1.38129 * 110.40584 * 359.97438 * 18 17 16 21 21 C 1.39133 * 133.10688 * 179.97438 * 20 18 17 22 22 C 1.37803 * 119.99390 * 179.76252 * 21 20 18 23 23 Cl 1.73595 * 119.71987 * 180.27654 * 22 21 20 24 24 C 1.39282 * 120.55526 * 0.51548 * 22 21 20 25 25 O 1.35995 * 119.90857 * 179.73877 * 24 22 21 26 26 C 1.42905 * 116.99762 * 179.73032 * 25 24 22 27 27 C 1.38166 * 120.17505 * 359.46511 * 24 22 21 28 28 C 1.39294 * 119.64460 * 0.27198 * 27 24 22 29 29 H 1.09006 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46769 * 300.00070 * 1 2 3 31 31 H 1.08993 * 109.47019 * 60.00265 * 1 2 3 32 32 H 1.09001 * 109.47179 * 239.99781 * 2 1 3 33 33 H 1.09006 * 109.47058 * 120.00363 * 2 1 3 34 34 H 0.96991 * 120.00594 * 179.97438 * 8 7 5 35 35 H 0.96995 * 120.00018 * 265.00177 * 13 3 2 36 36 H 1.08002 * 125.11449 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.00142 * 0.02562 * 21 20 18 38 38 H 1.09001 * 109.47103 * 180.02562 * 26 25 24 39 39 H 1.09004 * 109.47054 * 299.99753 * 26 25 24 40 40 H 1.09000 * 109.47187 * 59.99808 * 26 25 24 41 41 H 1.08006 * 120.17537 * 180.29139 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1734 9 14 6.0050 0.8800 1.3812 10 1 6.4428 2.1129 2.0837 11 1 6.4391 -0.3110 2.1547 12 1 6.6131 0.8394 0.0271 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3417 2.6325 -0.4311 16 6 0.0464 3.3206 -2.6223 17 6 0.8033 3.4371 -3.7508 18 7 0.1084 4.1062 -4.7017 19 1 0.4411 4.3108 -5.5895 20 6 -1.1412 4.4560 -4.2283 21 6 -2.2154 5.1369 -4.7926 22 6 -3.3655 5.3370 -4.0604 23 17 -4.7041 6.1812 -4.7740 24 6 -3.4611 4.8721 -2.7510 25 8 -4.6005 5.0815 -2.0385 26 6 -4.6334 4.5731 -0.7034 27 6 -2.4037 4.1938 -2.1759 28 6 -1.2394 3.9824 -2.9107 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8292 -0.0610 2.9500 35 1 2.2720 2.1231 -1.9977 36 1 1.8063 3.0543 -3.8684 37 1 -2.1494 5.5048 -5.8059 38 1 -5.5961 4.8073 -0.2491 39 1 -4.4946 3.4921 -0.7227 40 1 -3.8348 5.0316 -0.1202 41 1 -2.4797 3.8291 -1.1621 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585089288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:24 Heat of formation + Delta-G solvation = -26.838309 kcal Electronic energy + Delta-G solvation = -26374.486416 eV Core-core repulsion = 22474.026293 eV Total energy + Delta-G solvation = -3900.460122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53927 -39.41021 -38.53769 -36.85748 -35.58240 -34.96563 -32.45370 -31.96532 -30.88790 -29.33994 -28.93743 -27.13694 -26.79188 -23.48420 -22.86214 -22.37296 -21.87558 -19.86706 -19.17604 -18.50896 -17.74510 -16.69714 -16.56537 -15.82494 -15.67626 -15.37954 -15.16109 -14.83796 -14.36115 -14.14718 -14.09576 -13.99799 -13.36403 -13.00736 -12.87593 -12.72998 -12.50363 -12.00396 -11.90624 -11.52480 -11.48316 -11.29332 -11.22208 -10.96862 -10.89662 -10.84672 -10.52418 -10.31982 -10.15723 -9.70288 -9.57846 -9.07252 -9.00474 -8.49265 -8.05204 -7.86113 -7.62990 -6.12625 -4.21982 0.75817 1.35652 1.99100 2.10928 2.92069 3.22135 3.23315 3.30303 3.31335 3.52332 4.12603 4.18168 4.38794 4.53623 4.62397 4.96652 5.05225 5.13307 5.18896 5.19489 5.23720 5.37533 5.54721 5.57821 5.75686 5.88492 6.11196 6.31523 6.42046 6.49705 6.54679 6.69524 6.70064 7.07863 7.21919 7.25808 7.26074 7.39606 7.49081 7.63078 7.76629 7.92173 8.19332 8.70688 8.80039 9.19875 9.45983 10.92700 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.002764 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.956495 B =10127.791772 C =10992.393449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.574 3.426 15 O -0.550 6.550 16 C -0.216 4.216 17 C 0.110 3.890 18 N -0.578 5.578 19 H 0.419 0.581 20 C 0.062 3.938 21 C -0.084 4.084 22 C -0.044 4.044 23 Cl -0.060 7.060 24 C 0.112 3.888 25 O -0.309 6.309 26 C 0.025 3.975 27 C -0.142 4.142 28 C -0.021 4.021 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.264 0.736 35 H 0.384 0.616 36 H 0.183 0.817 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 8.384 -14.821 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.360 3.640 15 O -0.430 6.430 16 C -0.227 4.227 17 C -0.022 4.022 18 N -0.181 5.181 19 H 0.257 0.743 20 C -0.043 4.043 21 C -0.105 4.105 22 C -0.072 4.072 23 Cl -0.031 7.031 24 C 0.065 3.935 25 O -0.222 6.222 26 C -0.070 4.070 27 C -0.161 4.161 28 C -0.026 4.026 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.216 0.784 36 H 0.200 0.800 37 H 0.155 0.845 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.127 8.436 -14.143 19.875 hybrid contribution 1.617 -0.042 -0.580 1.718 sum -9.510 8.394 -14.723 19.433 Atomic orbital electron populations 1.21840 0.98331 0.97954 1.01339 1.21929 0.92652 0.99816 1.02176 1.18762 0.94063 0.89128 0.80971 0.93228 1.21224 0.90764 1.38966 1.06260 0.92165 1.24878 0.98496 0.94847 0.95432 1.69890 1.35091 1.37597 1.09313 0.86479 0.84991 0.77641 0.78148 1.20602 1.21102 1.19908 1.46339 1.14300 1.56242 1.18443 1.17109 0.82639 0.78556 0.85699 1.90724 1.51685 1.60615 1.39937 1.20482 0.94883 1.11124 0.96207 1.22220 0.97442 0.94858 0.87725 1.41399 1.12186 1.49310 1.15191 0.74327 1.17858 0.87616 1.04353 0.94505 1.19498 0.89801 1.01221 0.99957 1.19552 0.91051 1.04748 0.91840 1.98349 1.45344 1.76241 1.83149 1.18321 0.87065 0.97813 0.90314 1.86107 1.33735 1.75370 1.27002 1.23122 1.03575 0.99589 0.80713 1.20695 0.91523 1.02038 1.01842 1.18570 0.93554 0.98417 0.92067 0.95998 0.93176 0.94107 0.95114 0.88371 0.92572 0.78408 0.80021 0.84462 0.88210 0.92180 0.92156 0.83084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.66 2.24 -69.09 -0.15 6.51 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.67 8.73 -34.44 -0.30 -13.97 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.29 11.29 55.43 0.63 -23.66 16 9 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.71 -14.06 5.01 -56.18 -0.28 -14.34 16 14 C 0.57 11.34 6.36 -12.76 -0.08 11.26 16 15 O -0.55 -12.64 13.28 5.22 0.07 -12.57 16 16 C -0.22 -3.41 6.27 -103.31 -0.65 -4.06 16 17 C 0.11 1.22 11.33 -16.62 -0.19 1.03 16 18 N -0.58 -5.37 5.99 -10.45 -0.06 -5.43 16 19 H 0.42 2.22 8.96 -40.82 -0.37 1.86 16 20 C 0.06 0.75 7.26 -83.90 -0.61 0.14 16 21 C -0.08 -0.92 9.83 -39.41 -0.39 -1.31 16 22 C -0.04 -0.55 6.33 -39.35 -0.25 -0.80 16 23 Cl -0.06 -0.68 28.46 -51.86 -1.48 -2.16 16 24 C 0.11 1.56 6.68 -39.22 -0.26 1.30 16 25 O -0.31 -4.06 9.94 -19.72 -0.20 -4.26 16 26 C 0.02 0.26 9.81 101.05 0.99 1.25 16 27 C -0.14 -2.16 8.83 -39.22 -0.35 -2.51 16 28 C -0.02 -0.32 6.26 -104.95 -0.66 -0.98 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 31 H 0.04 0.89 5.64 -51.93 -0.29 0.59 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.38 6.40 7.42 -40.82 -0.30 6.10 16 36 H 0.18 1.41 7.38 -52.49 -0.39 1.03 16 37 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 40 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 41 H 0.15 2.44 5.67 -52.48 -0.30 2.14 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -31.93 354.29 -8.60 -40.53 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.78 Total: 7.78 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.82 Total: -6.37 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.28 Total: -43.43 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.13 Total: -16.83 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.93 -8.60 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.689 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds