Wall clock time and date at job start Tue Mar 31 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21637 * 120.00125 * 359.97438 * 14 13 3 16 16 C 1.47193 * 120.00209 * 180.02562 * 14 13 3 17 17 N 1.31443 * 126.25841 * 0.02562 * 16 14 13 18 18 N 1.28682 * 109.35448 * 180.02562 * 17 16 14 19 19 C 1.31955 * 109.31669 * 0.02562 * 18 17 16 20 20 C 1.47501 * 126.28353 * 180.02562 * 19 18 17 21 21 C 1.39914 * 120.18527 * 179.69657 * 20 19 18 22 22 F 1.35093 * 120.09937 * 359.97438 * 21 20 19 23 23 C 1.38195 * 119.80224 * 179.69781 * 21 20 19 24 24 C 1.38332 * 120.19149 * 0.57964 * 23 21 20 25 25 C 1.38329 * 120.37859 * 359.71773 * 24 23 21 26 26 C 1.38194 * 120.18922 * 359.97438 * 25 24 23 27 27 F 1.35099 * 120.09658 * 180.02562 * 26 25 24 28 28 O 1.34515 * 107.42997 * 359.73453 * 19 18 17 29 29 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 31 31 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 32 32 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 33 33 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 36 36 H 1.08003 * 119.90752 * 180.29847 * 23 21 20 37 37 H 1.08000 * 119.81084 * 179.74149 * 24 23 21 38 38 H 1.07994 * 119.90093 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4361 2.1285 2.0883 11 1 6.4412 -0.2952 2.1653 12 1 6.6156 0.8506 0.0352 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3417 2.6320 -0.4317 16 6 0.0458 3.3220 -2.6249 17 7 0.7833 3.4274 -3.7078 18 7 0.1247 4.0633 -4.6121 19 6 -1.0629 4.3898 -4.1387 20 6 -2.1185 5.1249 -4.8606 21 6 -3.3392 5.3988 -4.2342 22 9 -3.5561 4.9902 -2.9649 23 6 -4.3203 6.0935 -4.9158 24 6 -4.1027 6.5073 -6.2177 25 6 -2.9011 6.2353 -6.8466 26 6 -1.9067 5.5472 -6.1775 27 9 -0.7336 5.2831 -6.7934 28 8 -1.1366 3.9237 -2.8790 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.8288 -0.0530 2.9544 35 1 2.2721 2.1230 -1.9977 36 1 -5.2615 6.3100 -4.4322 37 1 -4.8753 7.0462 -6.7460 38 1 -2.7393 6.5624 -7.8630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585089480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:56 Heat of formation + Delta-G solvation = -51.643140 kcal Electronic energy + Delta-G solvation = -28296.680521 eV Core-core repulsion = 23777.922189 eV Total energy + Delta-G solvation = -4518.758332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.50231 -49.40009 -44.20095 -39.39273 -39.17679 -36.40287 -35.26501 -33.45960 -32.57498 -31.27678 -30.99998 -29.96728 -27.25760 -25.44323 -24.64426 -23.35103 -22.95610 -22.39185 -21.14683 -19.63959 -18.88312 -18.40365 -17.77130 -17.63808 -17.40375 -16.39404 -16.35465 -16.13198 -15.97781 -15.71682 -15.47298 -15.13090 -14.81577 -14.67182 -14.49919 -13.55130 -13.30006 -12.78154 -12.69590 -12.59005 -12.56750 -12.41549 -12.28996 -12.07410 -11.69025 -11.42304 -11.33935 -11.04824 -10.91076 -10.77462 -10.44160 -10.31041 -9.86030 -9.64588 -9.38166 -9.18726 -9.07635 -8.60392 -8.12904 -6.20085 -4.30041 -0.28378 0.34654 0.92749 1.69007 1.99503 2.78102 3.08933 3.19532 3.23449 3.30348 3.32715 3.35122 3.65230 3.81093 4.02658 4.25741 4.27025 4.45230 4.48962 4.78983 4.96213 5.10292 5.12240 5.17328 5.30760 5.36135 5.43197 5.48901 6.03075 6.29152 6.34088 6.51963 6.91614 7.02573 7.03904 7.22636 7.44251 7.59992 7.73787 7.94386 8.03176 8.33088 8.51905 8.78868 9.36735 10.85484 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.023224 B = 0.002595 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.360210 B =10785.873246 C =11578.236749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.057 0.943 5 C -0.537 4.537 6 H 0.066 0.934 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.905 3.095 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.663 5.663 14 C 0.592 3.408 15 O -0.510 6.510 16 C 0.152 3.848 17 N -0.241 5.241 18 N -0.252 5.252 19 C 0.197 3.803 20 C -0.099 4.099 21 C 0.167 3.833 22 F -0.109 7.109 23 C -0.167 4.167 24 C -0.035 4.035 25 C -0.169 4.169 26 C 0.184 3.816 27 F -0.101 7.101 28 O -0.179 6.179 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.106 0.894 34 H 0.266 0.734 35 H 0.404 0.596 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.660 11.727 -17.547 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.075 0.925 5 C -0.576 4.576 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.732 3.268 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.313 5.313 14 C 0.370 3.630 15 O -0.385 6.385 16 C -0.060 4.060 17 N -0.095 5.095 18 N -0.103 5.103 19 C -0.010 4.010 20 C -0.103 4.103 21 C 0.146 3.854 22 F -0.087 7.087 23 C -0.186 4.186 24 C -0.054 4.054 25 C -0.187 4.187 26 C 0.163 3.837 27 F -0.079 7.079 28 O -0.055 6.055 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.238 0.762 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.132 11.392 -17.336 25.677 hybrid contribution 0.453 -0.027 0.641 0.785 sum -14.679 11.365 -16.695 24.967 Atomic orbital electron populations 1.21877 0.98299 0.98617 1.01068 1.21987 0.92624 0.99221 1.02994 1.19115 0.95008 0.89409 0.79437 0.92485 1.21178 0.90012 1.39790 1.06591 0.91568 1.24871 0.98933 0.94518 0.95180 1.69884 1.35359 1.37362 1.09231 0.86379 0.84327 0.77696 0.78357 1.20484 1.21001 1.19656 1.46424 1.12273 1.52826 1.19763 1.16032 0.84625 0.80309 0.81998 1.90900 1.51162 1.59194 1.37225 1.28226 0.80278 0.97989 0.99467 1.74841 1.24830 1.12759 0.97038 1.75139 1.01115 1.11482 1.22583 1.25000 0.95659 0.99037 0.81258 1.17260 0.91771 1.07330 0.93907 1.17500 0.92303 0.95444 0.80195 1.91663 1.94528 1.87524 1.35013 1.21215 1.00017 1.01398 0.95987 1.21121 0.96215 0.94972 0.93068 1.21218 0.93110 1.02093 1.02316 1.17265 0.83035 0.95434 0.87998 1.91675 1.43864 1.90970 1.81383 1.85013 1.36486 1.54690 1.29297 0.95249 0.92843 0.94754 0.94413 0.87631 0.92360 0.76155 0.82784 0.82915 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.64 2.24 -69.09 -0.15 6.49 16 4 H 0.06 1.58 7.58 -51.93 -0.39 1.19 16 5 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.07 1.65 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 8 N -0.88 -23.98 11.30 55.43 0.63 -23.35 16 9 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.66 -14.14 5.02 -56.09 -0.28 -14.42 16 14 C 0.59 12.53 6.37 -12.62 -0.08 12.45 16 15 O -0.51 -12.04 14.24 0.93 0.01 -12.02 16 16 C 0.15 2.91 8.19 -14.08 -0.12 2.79 16 17 N -0.24 -4.46 11.93 32.00 0.38 -4.08 16 18 N -0.25 -4.37 10.94 32.05 0.35 -4.02 16 19 C 0.20 3.13 7.95 -13.73 -0.11 3.02 16 20 C -0.10 -1.17 5.88 -104.87 -0.62 -1.78 16 21 C 0.17 1.66 7.29 -38.97 -0.28 1.38 16 22 F -0.11 -1.37 15.90 2.25 0.04 -1.34 16 23 C -0.17 -0.96 10.01 -39.56 -0.40 -1.35 16 24 C -0.04 -0.13 10.03 -39.51 -0.40 -0.53 16 25 C -0.17 -0.90 10.01 -39.56 -0.40 -1.30 16 26 C 0.18 1.75 7.29 -38.97 -0.28 1.46 16 27 F -0.10 -1.17 15.81 2.25 0.04 -1.13 16 28 O -0.18 -3.24 9.69 -1.38 -0.01 -3.25 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 31 H 0.03 0.74 5.64 -51.93 -0.29 0.44 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.11 2.73 5.96 -51.93 -0.31 2.42 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.40 7.89 8.24 -40.82 -0.34 7.55 16 36 H 0.15 0.51 8.06 -52.48 -0.42 0.09 16 37 H 0.15 0.03 8.06 -52.49 -0.42 -0.39 16 38 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -30.74 340.71 -5.19 -35.93 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -3.39 Total: 3.05 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -3.06 Total: 4.18 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 1.08 Total: -45.87 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.00 Total: -15.27 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.07 Total: -2.47 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.74 -5.19 -35.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.710 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds