Wall clock time and date at job start Tue Mar 31 2020 05:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34550 * 126.07672 * 2 1 4 4 O 1.34782 * 107.27051 * 180.22473 * 3 2 1 5 5 C 1.34433 * 107.68984 * 359.61087 * 4 3 2 6 6 C 1.47826 * 125.72293 * 180.14823 * 5 4 3 7 7 C 1.39585 * 120.14448 * 180.02562 * 6 5 4 8 8 C 1.37945 * 119.85460 * 179.74732 * 7 6 5 9 9 C 1.38373 * 120.14314 * 0.52477 * 8 7 6 10 10 C 1.50696 * 119.85297 * 179.70305 * 9 8 7 11 11 C 1.38336 * 120.29118 * 359.72731 * 9 8 7 12 12 S 1.76200 * 119.92505 * 179.97438 * 11 9 8 13 13 O 1.42104 * 106.40190 * 48.56235 * 12 11 9 14 14 O 1.42106 * 106.40118 * 181.47811 * 12 11 9 15 15 N 1.65589 * 107.21901 * 295.01900 * 12 11 9 16 16 C 1.46504 * 120.00494 * 269.99917 * 15 12 11 17 17 C 1.36938 * 120.00049 * 90.00237 * 15 12 11 18 18 H 1.08002 * 120.00156 * 22.91689 * 17 15 12 19 19 C 1.38814 * 120.00187 * 202.91225 * 17 15 12 20 20 N 1.31616 * 120.00049 * 10.88664 * 19 17 15 21 21 Si 1.86805 * 120.00034 * 190.87642 * 19 17 15 22 22 H 1.48496 * 109.47015 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47063 * 120.00450 * 21 19 17 24 24 H 1.48497 * 109.47135 * 240.00379 * 21 19 17 25 25 C 1.37977 * 120.14423 * 0.02562 * 11 9 8 26 26 N 1.31218 * 108.55114 * 0.39731 * 5 4 3 27 27 H 1.09001 * 109.47569 * 89.99335 * 1 2 3 28 28 H 1.09004 * 109.47288 * 209.99988 * 1 2 3 29 29 H 1.09008 * 109.47153 * 329.99388 * 1 2 3 30 30 H 1.08000 * 126.36975 * 359.96376 * 3 2 1 31 31 H 1.08004 * 120.07227 * 359.97438 * 7 6 5 32 32 H 1.08005 * 119.92588 * 180.22999 * 8 7 6 33 33 H 1.09001 * 109.47239 * 270.01867 * 10 9 8 34 34 H 1.09001 * 109.47390 * 30.02006 * 10 9 8 35 35 H 1.08997 * 109.47384 * 150.02513 * 10 9 8 36 36 H 1.09005 * 109.46900 * 94.24802 * 16 15 12 37 37 H 1.08994 * 109.47392 * 214.25352 * 16 15 12 38 38 H 1.08997 * 109.46472 * 334.25142 * 16 15 12 39 39 H 0.96996 * 120.00248 * 179.97438 * 20 19 17 40 40 H 1.08004 * 120.07543 * 180.02562 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2993 1.0875 0.0000 4 8 3.5751 0.6530 -0.0050 5 6 3.5490 -0.6911 0.0006 6 6 4.7321 -1.5774 0.0010 7 6 4.5694 -2.9637 0.0067 8 6 5.6775 -3.7852 0.0018 9 6 6.9484 -3.2377 0.0022 10 6 8.1544 -4.1413 0.0036 11 6 7.1166 -1.8646 0.0019 12 16 8.7392 -1.1778 0.0031 13 8 9.4613 -1.8526 -1.0180 14 8 8.5775 0.2336 0.0376 15 7 9.4501 -1.6022 1.4371 16 6 9.3160 -0.7311 2.6074 17 6 10.1634 -2.7675 1.5293 18 1 10.5794 -3.2178 0.6401 19 6 10.3518 -3.3701 2.7655 20 7 9.6746 -2.9494 3.8128 21 14 11.5666 -4.7782 2.9429 22 1 12.1950 -5.0584 1.6269 23 1 12.6175 -4.4047 3.9233 24 1 10.8532 -5.9902 3.4194 25 6 6.0165 -1.0318 0.0016 26 7 2.2971 -1.0843 0.0003 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5140 30 1 1.9735 2.1172 -0.0006 31 1 3.5780 -3.3923 0.0113 32 1 5.5530 -4.8580 0.0025 33 1 8.4444 -4.3587 1.0316 34 1 7.9120 -5.0716 -0.5100 35 1 8.9793 -3.6471 -0.5097 36 1 8.4727 -1.0634 3.2130 37 1 10.2294 -0.7761 3.2004 38 1 9.1460 0.2943 2.2793 39 1 9.8060 -3.3707 4.6765 40 1 6.1491 0.0401 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585129690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:45 Heat of formation + Delta-G solvation = -14.395102 kcal Electronic energy + Delta-G solvation = -27124.655356 eV Core-core repulsion = 23226.778518 eV Total energy + Delta-G solvation = -3897.876838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.23365 -38.89953 -36.12840 -35.76626 -35.18149 -34.52846 -33.27473 -31.57728 -31.04759 -30.75297 -27.91801 -26.68315 -26.01732 -23.64196 -22.90262 -22.60763 -21.14190 -20.60679 -18.57500 -17.85012 -17.03540 -16.66926 -16.62047 -16.15752 -15.38324 -15.21286 -14.66069 -14.52170 -14.32659 -14.03411 -13.51643 -13.42626 -13.38009 -13.19354 -12.94746 -12.73711 -12.30020 -12.07062 -11.91340 -11.79952 -11.64503 -11.43680 -11.11622 -11.08509 -10.99173 -10.95380 -10.70283 -10.55883 -10.49032 -10.31571 -10.12493 -9.71224 -9.35208 -9.25547 -8.86268 -8.18315 -7.90790 -6.64285 -4.12682 0.82590 1.39757 1.71408 1.88927 2.72907 2.76526 3.03083 3.10838 3.16318 3.84260 3.90980 3.95957 4.40596 4.68258 4.71010 4.80825 4.96713 5.09316 5.25107 5.34758 5.37990 5.43171 5.52073 5.60522 5.67383 5.86317 5.92956 5.99572 6.09902 6.19351 6.27082 6.36126 6.48444 6.53796 6.57773 6.77084 6.81955 7.00750 7.06305 7.15388 7.23207 7.37788 7.73858 8.17632 8.55389 9.02400 10.30807 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.003594 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.909275 B = 7787.879000 C = 8116.339460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.015 4.015 3 C -0.086 4.086 4 O -0.194 6.194 5 C 0.257 3.743 6 C -0.071 4.071 7 C -0.033 4.033 8 C -0.155 4.155 9 C 0.054 3.946 10 C -0.173 4.173 11 C -0.666 4.666 12 S 2.537 3.463 13 O -0.981 6.981 14 O -1.001 7.001 15 N -0.805 5.805 16 C 0.122 3.878 17 C -0.244 4.244 18 H 0.119 0.881 19 C 0.032 3.968 20 N -0.832 5.832 21 Si 0.922 3.078 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.003 3.997 26 N -0.483 5.483 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.214 0.786 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.275 0.725 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.535 1.144 -2.068 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 C -0.156 4.156 4 O -0.080 6.080 5 C 0.054 3.946 6 C -0.073 4.073 7 C -0.052 4.052 8 C -0.174 4.174 9 C 0.052 3.948 10 C -0.229 4.229 11 C -0.743 4.743 12 S 2.634 3.366 13 O -0.970 6.970 14 O -0.990 6.990 15 N -0.629 5.629 16 C -0.024 4.024 17 C -0.392 4.392 18 H 0.137 0.863 19 C -0.181 4.181 20 N -0.471 5.471 21 Si 0.747 3.253 22 H -0.183 1.183 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.017 4.017 26 N -0.213 5.213 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.231 0.769 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.599 1.194 -2.726 11.009 hybrid contribution -0.438 -0.251 0.552 0.748 sum -11.038 0.943 -2.174 11.289 Atomic orbital electron populations 1.20082 0.86502 1.03284 1.02763 1.21806 0.98122 0.88332 1.05337 1.24816 0.80093 1.00971 1.09765 1.84551 1.30351 1.23527 1.69551 1.23901 0.93063 0.78554 0.99073 1.17315 0.87674 0.91123 1.11148 1.21155 0.99484 0.91074 0.93530 1.21093 0.91859 0.99833 1.04594 1.19843 0.95598 0.92541 0.86824 1.21989 0.96611 0.98701 1.05626 1.32322 1.26857 1.02549 1.12574 1.11393 0.73519 0.74405 0.77306 1.93300 1.70595 1.74623 1.58525 1.93327 1.86636 1.31385 1.87691 1.54004 1.50390 1.29785 1.28744 1.21326 1.03456 0.90051 0.87563 1.20079 1.21089 1.01956 0.96065 0.86323 1.25752 0.98163 0.98259 0.95883 1.70109 1.36904 1.39238 1.00856 0.85904 0.79920 0.80017 0.79493 1.18313 1.20127 1.20180 1.20965 0.90003 1.00158 0.90617 1.70539 0.99846 1.30943 1.19941 0.90804 0.90636 0.90763 0.76902 0.84828 0.85101 0.87567 0.91783 0.86726 0.92821 0.90628 0.93734 0.91405 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.42 36.00 0.38 -0.24 16 2 C -0.01 -0.20 7.10 -82.88 -0.59 -0.79 16 3 C -0.09 -1.08 12.08 29.43 0.36 -0.73 16 4 O -0.19 -3.20 10.52 4.03 0.04 -3.16 16 5 C 0.26 4.54 7.90 -13.89 -0.11 4.43 16 6 C -0.07 -1.31 5.87 -104.98 -0.62 -1.92 16 7 C -0.03 -0.56 9.69 -39.19 -0.38 -0.94 16 8 C -0.16 -2.62 9.68 -39.64 -0.38 -3.00 16 9 C 0.05 1.04 5.88 -104.54 -0.61 0.43 16 10 C -0.17 -3.22 8.15 36.00 0.29 -2.93 16 11 C -0.67 -14.07 5.90 -39.64 -0.23 -14.31 16 12 S 2.54 58.32 5.16 -107.50 -0.55 57.77 16 13 O -0.98 -23.91 14.34 -57.17 -0.82 -24.73 16 14 O -1.00 -24.49 15.52 -57.17 -0.89 -25.38 16 15 N -0.80 -18.44 3.31 -66.68 -0.22 -18.66 16 16 C 0.12 2.67 8.92 59.85 0.53 3.20 16 17 C -0.24 -5.54 6.29 -15.06 -0.09 -5.64 16 18 H 0.12 2.66 6.30 -52.49 -0.33 2.33 16 19 C 0.03 0.71 4.97 -17.43 -0.09 0.62 16 20 N -0.83 -18.95 10.59 55.49 0.59 -18.36 16 21 Si 0.92 17.26 29.57 -169.99 -5.03 12.24 16 22 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 23 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 25 C 0.00 0.06 9.21 -39.19 -0.36 -0.30 16 26 N -0.48 -8.00 10.91 -7.97 -0.09 -8.09 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.21 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.13 1.99 7.83 -52.48 -0.41 1.58 16 32 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.11 2.04 6.58 -51.93 -0.34 1.70 16 34 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.11 2.35 3.65 -51.93 -0.19 2.16 16 36 H 0.05 1.19 7.40 -51.93 -0.38 0.81 16 37 H 0.08 1.64 7.22 -51.93 -0.37 1.27 16 38 H 0.04 0.92 6.93 -51.93 -0.36 0.56 16 39 H 0.28 5.91 8.31 -40.82 -0.34 5.57 16 40 H 0.14 2.77 7.17 -52.48 -0.38 2.39 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -29.15 343.34 -8.14 -37.29 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.44 Total: 8.02 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.91 Total: -22.11 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.28 Total: -45.11 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -1.66 Total: -53.27 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: 58.32 SS G_CDS: -0.55 Total: 57.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.15 -8.14 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585129690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.891 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds