Wall clock time and date at job start Tue Mar 31 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00032 * 2 1 4 4 H 1.48504 * 109.47172 * 276.05389 * 3 2 1 5 5 H 1.48501 * 109.47453 * 36.04720 * 3 2 1 6 6 H 1.48501 * 109.47515 * 156.05248 * 3 2 1 7 7 C 1.37878 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99941 * 349.63037 * 7 2 1 9 9 C 1.50702 * 120.00354 * 169.63360 * 7 2 1 10 10 C 1.53000 * 115.54765 * 324.15279 * 9 7 2 11 11 O 1.42904 * 109.47297 * 280.49473 * 10 9 7 12 12 C 1.35653 * 116.99871 * 184.96647 * 11 10 9 13 13 C 1.38706 * 120.15110 * 354.55296 * 12 11 10 14 14 C 1.38062 * 120.08404 * 179.97438 * 13 12 11 15 15 C 1.38543 * 120.39360 * 0.02562 * 14 13 12 16 16 C 1.37786 * 120.30299 * 359.97438 * 15 14 13 17 17 C 1.39718 * 119.90597 * 359.97438 * 16 15 14 18 18 C 1.47509 * 120.19269 * 180.02562 * 17 16 15 19 19 O 1.21605 * 119.99946 * 185.67923 * 18 17 16 20 20 N 1.34771 * 119.99861 * 5.67451 * 18 17 16 21 21 C 1.39855 * 119.99670 * 185.97843 * 20 18 17 22 22 C 1.38890 * 120.06844 * 212.76595 * 21 20 18 23 23 C 1.38119 * 119.92804 * 179.74145 * 22 21 20 24 24 C 1.38281 * 120.06499 * 0.53270 * 23 22 21 25 25 C 1.38283 * 120.15113 * 359.72283 * 24 23 22 26 26 C 1.38108 * 120.06830 * 0.02562 * 25 24 23 27 27 C 1.52997 * 117.51784 * 109.85591 * 9 7 2 28 28 C 1.52994 * 117.49596 * 178.48721 * 9 7 2 29 29 H 0.97002 * 120.00088 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47092 * 160.49166 * 10 9 7 31 31 H 1.09008 * 109.46982 * 40.49177 * 10 9 7 32 32 H 1.07998 * 119.95602 * 359.97438 * 13 12 11 33 33 H 1.08002 * 119.80205 * 180.02562 * 14 13 12 34 34 H 1.08001 * 119.85315 * 179.72464 * 15 14 13 35 35 H 1.08003 * 120.04825 * 180.02562 * 16 15 14 36 36 H 0.97001 * 120.00247 * 5.97769 * 20 18 17 37 37 H 1.08004 * 120.04007 * 359.97438 * 22 21 20 38 38 H 1.07992 * 119.96797 * 180.27424 * 23 22 21 39 39 H 1.08009 * 119.92486 * 179.69736 * 24 23 22 40 40 H 1.07997 * 119.96936 * 180.02562 * 25 24 23 41 41 H 1.08007 * 120.03208 * 179.97438 * 26 25 24 42 42 H 1.09000 * 117.49669 * 214.96679 * 27 9 7 43 43 H 1.08992 * 117.50058 * 359.97438 * 27 9 7 44 44 H 1.08999 * 117.50660 * 359.97183 * 28 9 7 45 45 H 1.09007 * 117.49741 * 144.97916 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3687 2.1202 -1.3923 5 1 1.5163 2.6124 0.8239 6 1 3.6048 1.4067 0.5683 7 6 2.0046 -1.1940 0.0005 8 1 1.4778 -2.1216 0.1693 9 6 3.4931 -1.2048 -0.2343 10 6 4.0110 -0.1683 -1.2335 11 8 3.7815 -0.6338 -2.5649 12 6 4.2769 0.1229 -3.5759 13 6 4.8714 1.3462 -3.3038 14 6 5.3756 2.1149 -4.3337 15 6 5.2921 1.6729 -5.6441 16 6 4.7049 0.4603 -5.9327 17 6 4.1914 -0.3283 -4.9000 18 6 3.5620 -1.6278 -5.2018 19 8 3.0247 -2.2636 -4.3153 20 7 3.5823 -2.1104 -6.4600 21 6 2.8796 -3.2786 -6.7722 22 6 3.3664 -4.1452 -7.7422 23 6 2.6730 -5.3008 -8.0445 24 6 1.4895 -5.5897 -7.3902 25 6 0.9993 -4.7264 -6.4277 26 6 1.6906 -3.5718 -6.1171 27 6 4.3935 -1.5534 0.9526 28 6 4.2060 -2.5576 -0.1864 29 1 -0.4850 0.8401 -0.0004 30 1 5.0797 -0.0182 -1.0802 31 1 3.4863 0.7753 -1.0830 32 1 4.9398 1.6977 -2.2849 33 1 5.8379 3.0666 -4.1166 34 1 5.6855 2.2834 -6.4435 35 1 4.6424 0.1196 -6.9557 36 1 4.0842 -1.6475 -7.1490 37 1 4.2882 -3.9177 -8.2570 38 1 3.0532 -5.9773 -8.7955 39 1 0.9465 -6.4916 -7.6319 40 1 0.0749 -4.9551 -5.9182 41 1 1.3070 -2.8977 -5.3655 42 1 5.3549 -1.0444 1.0215 43 1 3.9093 -1.7746 1.9036 44 1 3.5986 -3.4399 0.0153 45 1 5.0439 -2.7094 -0.8670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596235951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:21 Heat of formation + Delta-G solvation = 35.752101 kcal Electronic energy + Delta-G solvation = -28812.712353 eV Core-core repulsion = 24955.513636 eV Total energy + Delta-G solvation = -3857.198717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.72385 -39.65633 -38.16574 -37.48357 -36.01793 -34.59870 -32.19943 -31.63351 -30.84906 -29.94618 -29.20644 -27.49265 -25.25991 -24.28250 -22.80628 -22.44528 -21.80360 -21.31558 -20.30554 -19.16853 -18.54250 -17.57441 -17.06197 -16.62462 -16.16006 -16.09948 -15.33552 -15.14664 -15.01022 -14.70234 -14.38590 -14.20611 -13.88025 -13.75075 -13.39228 -13.26726 -12.97994 -12.84097 -12.77638 -12.37112 -12.12059 -11.71244 -11.61191 -11.36487 -11.30520 -11.19051 -10.90355 -10.57772 -10.36796 -10.27918 -9.86066 -9.58235 -9.55627 -9.25111 -9.07650 -8.86838 -8.76102 -8.40344 -8.09669 -7.93736 -6.14828 -4.06647 0.83491 1.38751 1.45772 1.48132 3.00575 3.06954 3.11441 3.21357 3.28671 3.52474 3.80911 3.99565 4.29647 4.62847 4.71738 4.85058 4.89296 4.95611 4.98548 5.18481 5.22771 5.23391 5.35365 5.45386 5.48919 5.50381 5.61085 5.64698 5.66549 5.75885 5.82023 6.05771 6.12120 6.13971 6.27344 6.37377 6.38090 6.40389 6.43246 6.53200 6.56178 6.65628 6.66290 6.75063 6.92249 7.11614 7.15022 7.44838 7.69809 7.83800 8.35257 8.49341 8.91268 9.47621 10.98272 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010393 B = 0.004187 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.562960 B = 6686.104929 C = 8138.810514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.879 3.121 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.471 4.471 8 H 0.082 0.918 9 C 0.007 3.993 10 C 0.086 3.914 11 O -0.251 6.251 12 C 0.202 3.798 13 C -0.226 4.226 14 C -0.048 4.048 15 C -0.180 4.180 16 C -0.048 4.048 17 C -0.185 4.185 18 C 0.554 3.446 19 O -0.471 6.471 20 N -0.680 5.680 21 C 0.158 3.842 22 C -0.154 4.154 23 C -0.104 4.104 24 C -0.143 4.143 25 C -0.097 4.097 26 C -0.120 4.120 27 C -0.199 4.199 28 C -0.172 4.172 29 H 0.265 0.735 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.405 0.595 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 -0.705 -17.150 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.508 4.508 8 H 0.100 0.900 9 C 0.006 3.994 10 C 0.012 3.988 11 O -0.160 6.160 12 C 0.151 3.849 13 C -0.245 4.245 14 C -0.067 4.067 15 C -0.198 4.198 16 C -0.067 4.067 17 C -0.189 4.189 18 C 0.342 3.658 19 O -0.342 6.342 20 N -0.327 5.327 21 C 0.063 3.937 22 C -0.175 4.175 23 C -0.123 4.123 24 C -0.162 4.162 25 C -0.116 4.116 26 C -0.140 4.140 27 C -0.237 4.237 28 C -0.210 4.210 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.241 0.759 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.157 0.843 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.122 -1.192 -16.402 19.310 hybrid contribution 0.831 1.519 -0.245 1.749 sum 10.953 0.328 -16.646 19.929 Atomic orbital electron populations 1.69893 1.06162 1.26991 1.49274 1.24975 0.94647 0.98729 0.94345 0.86968 0.80154 0.84363 0.77366 1.20763 1.22090 1.19021 1.20308 0.87483 0.95065 1.47985 0.90046 1.19156 0.94834 0.92782 0.92598 1.23164 0.97740 0.98227 0.79667 1.86499 1.69629 1.46132 1.13750 1.19274 0.88080 0.89061 0.88471 1.21381 1.06305 0.95747 1.01052 1.21109 0.94901 0.98340 0.92308 1.20847 1.04915 0.97409 0.96660 1.21041 0.94454 0.93819 0.97347 1.19109 1.10808 0.97312 0.91663 1.18175 0.80327 0.85482 0.81788 1.90984 1.41121 1.57629 1.44477 1.43471 1.51888 1.25825 1.11544 1.17732 0.91610 0.87473 0.96863 1.20833 1.00711 0.94931 1.00996 1.20870 0.95323 0.96315 0.99764 1.21103 0.97110 1.00114 0.97844 1.21098 0.99797 0.93859 0.96819 1.21322 0.93150 0.98875 1.00660 1.23217 1.00318 1.05308 0.94866 1.22663 1.02511 0.94564 1.01232 0.92459 0.93293 0.93205 0.85060 0.85481 0.85489 0.85435 0.75894 0.86035 0.86015 0.86212 0.85638 0.84334 0.91339 0.88970 0.89535 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.08 2.23 5.44 -17.82 -0.10 2.13 16 3 Si 0.88 21.88 24.31 -169.99 -4.13 17.75 16 4 H -0.28 -6.80 6.99 56.52 0.39 -6.41 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.09 6.48 56.52 0.37 -5.72 16 7 C -0.47 -13.78 9.59 -34.44 -0.33 -14.11 16 8 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.01 0.18 1.51 -155.66 -0.24 -0.05 16 10 C 0.09 1.96 3.51 37.16 0.13 2.09 16 11 O -0.25 -5.86 8.21 -40.46 -0.33 -6.19 16 12 C 0.20 3.90 6.69 -38.69 -0.26 3.64 16 13 C -0.23 -3.72 9.02 -39.47 -0.36 -4.07 16 14 C -0.05 -0.61 10.03 -39.53 -0.40 -1.00 16 15 C -0.18 -1.98 10.02 -39.63 -0.40 -2.37 16 16 C -0.05 -0.57 9.51 -39.19 -0.37 -0.94 16 17 C -0.18 -3.06 5.89 -104.85 -0.62 -3.67 16 18 C 0.55 9.80 7.48 -12.48 -0.09 9.70 16 19 O -0.47 -10.64 12.88 -16.53 -0.21 -10.86 16 20 N -0.68 -9.09 5.27 -10.81 -0.06 -9.15 16 21 C 0.16 2.22 6.28 -83.72 -0.53 1.70 16 22 C -0.15 -1.74 9.96 -39.38 -0.39 -2.14 16 23 C -0.10 -1.10 10.04 -39.61 -0.40 -1.49 16 24 C -0.14 -1.61 10.04 -39.55 -0.40 -2.01 16 25 C -0.10 -1.31 10.04 -39.61 -0.40 -1.71 16 26 C -0.12 -1.91 8.65 -39.39 -0.34 -2.25 16 27 C -0.20 -4.25 9.88 -26.73 -0.26 -4.51 16 28 C -0.17 -3.81 9.94 -26.73 -0.27 -4.08 16 29 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.05 0.97 7.43 -51.93 -0.39 0.58 16 31 H 0.05 1.19 1.33 -51.92 -0.07 1.12 16 32 H 0.13 2.15 6.33 -52.49 -0.33 1.82 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.01 6.50 -52.48 -0.34 0.67 16 36 H 0.40 3.76 6.93 -40.82 -0.28 3.47 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.14 2.59 6.42 -52.48 -0.34 2.26 16 42 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 43 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 44 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 45 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -35.14 370.88 -9.95 -45.09 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.57 Total: 9.66 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -6.00 Total: -25.16 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.72 Total: -35.88 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.55 Total: -17.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.13 Total: 17.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.14 -9.95 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596235951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.841 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds